CircRNA Information

General Information
circRNA Basic Information
CircID chr17:38734143|38734308
Strand +
CircType exon
Host Gene ENSG00000277972.1;
Algorism CIRI2;
Sequence AGATCCCAGACTTTGCCAGAGGCAAACAGCCTTCCAATTGCCCCTCCACCCCCAGCTGAGGCCCGGTCACCTGGTCAGGACAGAGCAACTGCATCTAAAAGCACAAGAAGACAGAAACCTGTAAGCTCTGACCCCACCCCCACCCCTTGAGAGGTCAGCGGACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:38734143|38734308 hsa-miR-552-5p 0 0 1
chr17:38734143|38734308 hsa-miR-552-3p 0 0 1
chr17:38734143|38734308 hsa-miR-578 0 1 1
chr17:38734143|38734308 hsa-miR-581 0 0 1
chr17:38734143|38734308 hsa-miR-600 0 0 1
chr17:38734143|38734308 hsa-miR-608 1 1 1
chr17:38734143|38734308 hsa-miR-636 0 0 1
chr17:38734143|38734308 hsa-miR-637 1 0 1
chr17:38734143|38734308 hsa-miR-638 0 0 1
chr17:38734143|38734308 hsa-miR-513c-5p 0 0 1
chr17:38734143|38734308 hsa-miR-513c-3p 0 0 1
chr17:38734143|38734308 hsa-miR-125a-3p 0 1 1
chr17:38734143|38734308 hsa-miR-615-5p 0 0 1
chr17:38734143|38734308 hsa-miR-423-5p 0 1 1
chr17:38734143|38734308 hsa-miR-1207-3p 0 0 1
chr17:38734143|38734308 hsa-miR-769-3p 0 0 1
chr17:38734143|38734308 hsa-miR-450b-3p 0 0 1
chr17:38734143|38734308 hsa-miR-218 0 0 1
chr17:38734143|38734308 hsa-miR-658 1 0 0
chr17:38734143|38734308 hsa-miR-762 1 0 0
chr17:38734143|38734308 hsa-miR-663b 1 0 0
chr17:38734143|38734308 hsa-miR-1268a 1 0 0
chr17:38734143|38734308 hsa-miR-2861 1 0 0
chr17:38734143|38734308 hsa-miR-4259 1 0 0
chr17:38734143|38734308 hsa-miR-3652 1 0 0
chr17:38734143|38734308 hsa-miR-3937 1 0 0
chr17:38734143|38734308 hsa-miR-1268b 1 0 0
chr17:38734143|38734308 hsa-miR-4488 1 0 0
chr17:38734143|38734308 hsa-miR-4505 1 0 0
chr17:38734143|38734308 hsa-miR-1587 1 0 0
chr17:38734143|38734308 hsa-miR-4651 1 1 0
chr17:38734143|38734308 hsa-miR-4669 1 0 0
chr17:38734143|38734308 hsa-miR-4686 1 0 0
chr17:38734143|38734308 hsa-miR-4688 1 0 0
chr17:38734143|38734308 hsa-miR-5194 1 0 0
chr17:38734143|38734308 hsa-miR-5572 1 0 0
chr17:38734143|38734308 hsa-miR-5787 1 0 0
chr17:38734143|38734308 hsa-miR-6745 1 0 0
chr17:38734143|38734308 hsa-miR-8089 1 0 0
chr17:38734143|38734308 hsa-miR-9718 1 0 0
chr17:38734143|38734308 hsa-miR-12114 1 0 0
chr17:38734143|38734308 hsa-miR-4433b-3p 1 0 0
chr17:38734143|38734308 hsa-miR-4731-5p 1 0 0
chr17:38734143|38734308 hsa-miR-7106-5p 1 0 0
chr17:38734143|38734308 hsa-miR-6510-5p 1 0 0
chr17:38734143|38734308 hsa-miR-6515-5p 0 1 0
chr17:38734143|38734308 hsa-miR-6089 1 0 0
chr17:38734143|38734308 hsa-miR-6880-5p 1 0 0
chr17:38734143|38734308 hsa-miR-7847-3p 1 0 0
chr17:38734143|38734308 hsa-miR-6759-5p 1 0 0
chr17:38734143|38734308 hsa-miR-197-5p 1 0 0
chr17:38734143|38734308 hsa-miR-7108-5p 1 0 0
chr17:38734143|38734308 hsa-miR-6742-5p 0 1 0
chr17:38734143|38734308 hsa-miR-3180-3p 1 0 0
chr17:38734143|38734308 hsa-miR-6748-5p 1 0 0
chr17:38734143|38734308 hsa-miR-185-3p 1 0 0
chr17:38734143|38734308 hsa-miR-6732-5p 1 0 0
chr17:38734143|38734308 hsa-miR-6782-5p 1 1 0
chr17:38734143|38734308 hsa-miR-6835-5p 1 0 0
chr17:38734143|38734308 hsa-miR-6784-5p 1 0 0
chr17:38734143|38734308 hsa-miR-4640-5p 1 0 0
chr17:38734143|38734308 hsa-miR-6749-5p 1 1 0
chr17:38734143|38734308 hsa-miR-4787-5p 1 1 0
chr17:38734143|38734308 hsa-miR-378a-5p 0 1 0
chr17:38734143|38734308 hsa-miR-593-3p 1 0 0
chr17:38734143|38734308 hsa-miR-4638-5p 1 0 0
chr17:38734143|38734308 hsa-miR-6801-5p 0 1 0
chr17:38734143|38734308 hsa-miR-4763-3p 1 0 0
chr17:38734143|38734308 hsa-miR-6769b-5p 1 0 0
chr17:38734143|38734308 hsa-miR-6787-5p 1 0 0
chr17:38734143|38734308 hsa-miR-6737-5p 1 0 0
chr17:38734143|38734308 hsa-miR-6743-5p 1 1 0
chr17:38734143|38734308 hsa-miR-6752-5p 1 1 0
chr17:38734143|38734308 hsa-miR-6756-5p 1 1 0
chr17:38734143|38734308 hsa-miR-6803-5p 1 1 0
chr17:38734143|38734308 hsa-miR-6819-5p 1 1 0
chr17:38734143|38734308 hsa-miR-6842-5p 1 1 0
chr17:38734143|38734308 hsa-miR-6851-5p 1 0 0
chr17:38734143|38734308 hsa-miR-7110-5p 1 1 0
chr17:38734143|38734308 hsa-miR-6751-5p 1 1 0
chr17:38734143|38734308 hsa-miR-7111-5p 1 0 0
chr17:38734143|38734308 hsa-miR-3620-5p 1 0 0
chr17:38734143|38734308 hsa-miR-4728-5p 1 0 0
chr17:38734143|38734308 hsa-miR-10396b-5p 1 0 0
chr17:38734143|38734308 hsa-miR-1237-5p 1 0 0
chr17:38734143|38734308 hsa-miR-328-5p 1 0 0
chr17:38734143|38734308 hsa-miR-6795-5p 1 0 0
chr17:38734143|38734308 hsa-miR-6887-5p 1 0 0
chr17:38734143|38734308 hsa-miR-4758-5p 1 0 0
chr17:38734143|38734308 hsa-miR-6766-5p 0 1 0
chr17:38734143|38734308 hsa-miR-514b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:38734143|38734308
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence MPEANSLPIAPPPPAEARSPGQDRATASKSTRRQKPVSSDPTPTP
Nucleotide Sequence TTGCCAGAGGCAAACAGCCTTCCAATTGCCCCTCCACCCCCAGCTGAGGCCCGGTCACCTGGTCAGGACAGAGCAACTGCATCTAAAAGCACAAGAAGACAGAAACCTGTAAGCTCTGACCCCACCCCCACCCCTTGA
CircID chr17:38734143|38734308
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MPLHPQLRPGHLVRTEQLHLKAQEDRNL
Nucleotide Sequence TTGCCCCTCCACCCCCAGCTGAGGCCCGGTCACCTGGTCAGGACAGAGCAACTGCATCTAAAAGCACAAGAAGACAGAAACCTGTAA
CircID chr17:38734143|38734308
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MQLLCPDQVTGPQLGVEGQLEGCLPLAKSGI
Nucleotide Sequence ATGCAGTTGCTCTGTCCTGACCAGGTGACCGGGCCTCAGCTGGGGGTGGAGGGGCAATTGGAAGGCTGTTTGCCTCTGGCAAAGTCTGGGATC
CircID chr17:38734143|38734308
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MTSQGVGVGSELTGFCLLVLLDAVALS
Nucleotide Sequence CTGACCTCTCAAGGGGTGGGGGTGGGGTCAGAGCTTACAGGTTTCTGTCTTCTTGTGCTTTTAGATGCAGTTGCTCTGTCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab