CircRNA Information

General Information
circRNA Basic Information
CircID chr17:38735233|38735369
Strand +
CircType exon
Host Gene ENSG00000277258.3;
Algorism CIRI2;
Sequence CCTACCTCCCCCACTCCCCCTTCGACAGCCAGTGGGGCCACCACAGCTGCCAACGGGGGTAGCTTGAACTGCCTGCAGACACCATCCTCCACCAGCAGGGGGCGCAAGATGACTGTCAACGGCGCTCCCGTGCCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:38735233|38735369 hsa-let-7b-5p 0 0 1
chr17:38735233|38735369 hsa-let-7b-3p 0 0 1
chr17:38735233|38735369 hsa-let-7c-5p 0 0 1
chr17:38735233|38735369 hsa-let-7c-3p 0 0 1
chr17:38735233|38735369 hsa-let-7d-5p 0 0 1
chr17:38735233|38735369 hsa-let-7d-3p 0 0 1
chr17:38735233|38735369 hsa-let-7e-5p 0 0 1
chr17:38735233|38735369 hsa-let-7e-3p 0 0 1
chr17:38735233|38735369 hsa-miR-98-5p 0 0 1
chr17:38735233|38735369 hsa-miR-98-3p 0 0 1
chr17:38735233|38735369 hsa-let-7g-5p 0 0 1
chr17:38735233|38735369 hsa-let-7g-3p 0 0 1
chr17:38735233|38735369 hsa-let-7i-5p 0 0 1
chr17:38735233|38735369 hsa-let-7i-3p 0 0 1
chr17:38735233|38735369 hsa-miR-370-5p 0 0 1
chr17:38735233|38735369 hsa-miR-370-3p 0 0 1
chr17:38735233|38735369 hsa-miR-346 0 0 1
chr17:38735233|38735369 hsa-miR-498-5p 0 0 1
chr17:38735233|38735369 hsa-miR-498-3p 0 0 1
chr17:38735233|38735369 hsa-miR-564 0 0 1
chr17:38735233|38735369 hsa-miR-625-5p 0 0 1
chr17:38735233|38735369 hsa-miR-625-3p 0 0 1
chr17:38735233|38735369 hsa-miR-632 0 0 1
chr17:38735233|38735369 hsa-miR-765 0 0 1
chr17:38735233|38735369 hsa-miR-892b 0 0 1
chr17:38735233|38735369 hsa-miR-663b 0 0 1
chr17:38735233|38735369 hsa-miR-1205 0 0 1
chr17:38735233|38735369 hsa-miR-1275 0 0 1
chr17:38735233|38735369 hsa-miR-1306-5p 0 0 1
chr17:38735233|38735369 hsa-miR-1306-3p 0 0 1
chr17:38735233|38735369 hsa-miR-885-3p 0 0 1
chr17:38735233|38735369 hsa-miR-1184 0 0 1
chr17:38735233|38735369 hsa-miR-339-3p 0 0 1
chr17:38735233|38735369 hsa-miR-138 0 0 1
chr17:38735233|38735369 hsa-let-7a 0 0 1
chr17:38735233|38735369 hsa-let-7f 0 0 1
chr17:38735233|38735369 hsa-miR-638 1 0 0
chr17:38735233|38735369 hsa-miR-658 1 0 0
chr17:38735233|38735369 hsa-miR-3154 1 0 0
chr17:38735233|38735369 hsa-miR-3165 1 0 0
chr17:38735233|38735369 hsa-miR-2392 1 0 0
chr17:38735233|38735369 hsa-miR-4525 1 0 0
chr17:38735233|38735369 hsa-miR-4534 1 0 0
chr17:38735233|38735369 hsa-miR-4647 1 0 0
chr17:38735233|38735369 hsa-miR-4710 1 0 0
chr17:38735233|38735369 hsa-miR-4739 1 0 0
chr17:38735233|38735369 hsa-miR-4741 1 0 0
chr17:38735233|38735369 hsa-miR-4767 1 0 0
chr17:38735233|38735369 hsa-miR-5192 1 0 0
chr17:38735233|38735369 hsa-miR-6086 1 0 0
chr17:38735233|38735369 hsa-miR-6133 1 0 0
chr17:38735233|38735369 hsa-miR-8075 1 0 0
chr17:38735233|38735369 hsa-miR-9899 1 0 0
chr17:38735233|38735369 hsa-miR-12114 1 0 0
chr17:38735233|38735369 hsa-miR-12118 1 0 0
chr17:38735233|38735369 hsa-miR-12119 1 0 0
chr17:38735233|38735369 hsa-miR-138-5p 1 0 0
chr17:38735233|38735369 hsa-miR-6894-5p 1 0 0
chr17:38735233|38735369 hsa-miR-4687-3p 1 0 0
chr17:38735233|38735369 hsa-miR-6799-5p 1 0 0
chr17:38735233|38735369 hsa-miR-8071 1 0 0
chr17:38735233|38735369 hsa-miR-766-5p 1 0 0
chr17:38735233|38735369 hsa-miR-6804-5p 1 0 0
chr17:38735233|38735369 hsa-miR-6880-5p 1 0 0
chr17:38735233|38735369 hsa-miR-7847-3p 1 0 0
chr17:38735233|38735369 hsa-miR-7154-3p 1 0 0
chr17:38735233|38735369 hsa-miR-8069 1 0 0
chr17:38735233|38735369 hsa-miR-3605-5p 1 0 0
chr17:38735233|38735369 hsa-miR-6748-5p 1 0 0
chr17:38735233|38735369 hsa-miR-6827-5p 1 0 0
chr17:38735233|38735369 hsa-miR-6798-5p 1 0 0
chr17:38735233|38735369 hsa-miR-6786-5p 1 0 0
chr17:38735233|38735369 hsa-miR-1909-5p 1 0 0
chr17:38735233|38735369 hsa-miR-3691-5p 1 0 0
chr17:38735233|38735369 hsa-miR-5010-5p 1 0 0
chr17:38735233|38735369 hsa-miR-2277-5p 1 0 0
chr17:38735233|38735369 hsa-miR-6769b-5p 1 0 0
chr17:38735233|38735369 hsa-miR-6778-5p 1 0 0
chr17:38735233|38735369 hsa-miR-6787-5p 1 0 0
chr17:38735233|38735369 hsa-miR-1343-5p 1 0 0
chr17:38735233|38735369 hsa-miR-6756-5p 1 0 0
chr17:38735233|38735369 hsa-miR-11181-3p 1 0 0
chr17:38735233|38735369 hsa-miR-1249-5p 1 0 0
chr17:38735233|38735369 hsa-miR-6779-5p 1 0 0
chr17:38735233|38735369 hsa-miR-7111-5p 1 0 0
chr17:38735233|38735369 hsa-miR-6780b-5p 1 0 0
chr17:38735233|38735369 hsa-miR-10526-3p 1 0 0
chr17:38735233|38735369 hsa-miR-6846-5p 1 0 0
chr17:38735233|38735369 hsa-miR-6848-5p 1 0 0
chr17:38735233|38735369 hsa-miR-6883-5p 1 0 0
chr17:38735233|38735369 hsa-miR-4697-5p 1 0 0
chr17:38735233|38735369 hsa-miR-10394-3p 1 0 0
chr17:38735233|38735369 hsa-miR-4665-5p 1 0 0
chr17:38735233|38735369 hsa-miR-4472 1 0 0
chr17:38735233|38735369 hsa-miR-6785-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:38735233|38735369
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MTVILRPLLVEDGVCRQFKLPPLAAVVAPLAVEGGVGEV
Nucleotide Sequence TTGACAGTCATCTTGCGCCCCCTGCTGGTGGAGGATGGTGTCTGCAGGCAGTTCAAGCTACCCCCGTTGGCAGCTGTGGTGGCCCCACTGGCTGTCGAAGGGGGAGTGGGGGAGGTA
CircID chr17:38735233|38735369
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MVSAGSSSYPRWQLWWPHWLSKGEWGR
Nucleotide Sequence ATGGTGTCTGCAGGCAGTTCAAGCTACCCCCGTTGGCAGCTGTGGTGGCCCCACTGGCTGTCGAAGGGGGAGTGGGGGAGGTAG
CircID chr17:38735233|38735369
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MQAVQATPVGSCGGPTGCRRGSGGGR
Nucleotide Sequence CTGCAGGCAGTTCAAGCTACCCCCGTTGGCAGCTGTGGTGGCCCCACTGGCTGTCGAAGGGGGAGTGGGGGAGGTAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab