CircRNA Information

General Information
circRNA Basic Information
CircID chr17:38919648|38919817
Strand -
CircType exon
Host Gene ENSG00000002834.16;
Algorism CIRI2;
Sequence CTTTTGGTCTTCAGCCTCCCTCAGCCCCCAGGATCTGGGTTAGGTGGCCGCTCCTCCCTGCTCCTCATGGGAAGATGTCTCAGAGCCTTCCATGACCTCCCCTCCCCAGCCCAATGCCAAGTGGACTTGGAGCTGCACAAAGTCAGCAGGGACCACTAAATCTCCAAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:38919648|38919817 hsa-miR-370-5p 0 0 1
chr17:38919648|38919817 hsa-miR-370-3p 0 0 1
chr17:38919648|38919817 hsa-miR-432-5p 0 0 1
chr17:38919648|38919817 hsa-miR-432-3p 0 0 1
chr17:38919648|38919817 hsa-miR-620 0 0 1
chr17:38919648|38919817 hsa-miR-637 1 1 1
chr17:38919648|38919817 hsa-miR-1301-5p 0 0 1
chr17:38919648|38919817 hsa-miR-1301-3p 0 0 1
chr17:38919648|38919817 hsa-miR-765 0 0 1
chr17:38919648|38919817 hsa-miR-760 1 0 1
chr17:38919648|38919817 hsa-miR-939-5p 0 0 1
chr17:38919648|38919817 hsa-miR-939-3p 0 0 1
chr17:38919648|38919817 hsa-miR-1256 0 0 1
chr17:38919648|38919817 hsa-miR-1270 0 0 1
chr17:38919648|38919817 hsa-miR-1321 0 0 1
chr17:38919648|38919817 hsa-miR-140-5p 0 0 1
chr17:38919648|38919817 hsa-miR-485-5p 0 0 1
chr17:38919648|38919817 hsa-miR-490-5p 0 0 1
chr17:38919648|38919817 hsa-miR-628-5p 0 0 1
chr17:38919648|38919817 hsa-miR-608 1 0 0
chr17:38919648|38919817 hsa-miR-658 1 0 0
chr17:38919648|38919817 hsa-miR-762 1 1 0
chr17:38919648|38919817 hsa-miR-2113 0 1 0
chr17:38919648|38919817 hsa-miR-3147 1 0 0
chr17:38919648|38919817 hsa-miR-3197 1 0 0
chr17:38919648|38919817 hsa-miR-4281 1 0 0
chr17:38919648|38919817 hsa-miR-3921 0 1 0
chr17:38919648|38919817 hsa-miR-4440 1 0 0
chr17:38919648|38919817 hsa-miR-4441 0 1 0
chr17:38919648|38919817 hsa-miR-4449 1 0 0
chr17:38919648|38919817 hsa-miR-4498 0 1 0
chr17:38919648|38919817 hsa-miR-4505 1 0 0
chr17:38919648|38919817 hsa-miR-4507 1 0 0
chr17:38919648|38919817 hsa-miR-1587 1 1 0
chr17:38919648|38919817 hsa-miR-4651 1 0 0
chr17:38919648|38919817 hsa-miR-4656 1 1 0
chr17:38919648|38919817 hsa-miR-4688 1 0 0
chr17:38919648|38919817 hsa-miR-4689 1 1 0
chr17:38919648|38919817 hsa-miR-4706 1 1 0
chr17:38919648|38919817 hsa-miR-4734 1 0 0
chr17:38919648|38919817 hsa-miR-4739 1 1 0
chr17:38919648|38919817 hsa-miR-4741 1 0 0
chr17:38919648|38919817 hsa-miR-5787 1 1 0
chr17:38919648|38919817 hsa-miR-6085 1 1 0
chr17:38919648|38919817 hsa-miR-6125 1 0 0
chr17:38919648|38919817 hsa-miR-8077 1 0 0
chr17:38919648|38919817 hsa-miR-8089 1 1 0
chr17:38919648|38919817 hsa-miR-93-3p 0 1 0
chr17:38919648|38919817 hsa-miR-6734-5p 1 0 0
chr17:38919648|38919817 hsa-miR-7106-5p 1 1 0
chr17:38919648|38919817 hsa-miR-6825-5p 1 1 0
chr17:38919648|38919817 hsa-miR-6799-5p 1 1 0
chr17:38919648|38919817 hsa-miR-6510-5p 0 1 0
chr17:38919648|38919817 hsa-miR-7160-5p 1 1 0
chr17:38919648|38919817 hsa-miR-7845-5p 1 0 0
chr17:38919648|38919817 hsa-miR-3180-3p 1 0 0
chr17:38919648|38919817 hsa-miR-6852-5p 1 1 0
chr17:38919648|38919817 hsa-miR-6835-5p 1 0 0
chr17:38919648|38919817 hsa-miR-1229-5p 1 0 0
chr17:38919648|38919817 hsa-miR-296-3p 1 0 0
chr17:38919648|38919817 hsa-miR-6771-5p 1 0 0
chr17:38919648|38919817 hsa-miR-3614-5p 0 1 0
chr17:38919648|38919817 hsa-miR-149-3p 1 0 0
chr17:38919648|38919817 hsa-miR-6830-5p 1 0 0
chr17:38919648|38919817 hsa-miR-6824-5p 1 0 0
chr17:38919648|38919817 hsa-miR-664b-5p 1 0 0
chr17:38919648|38919817 hsa-miR-423-5p 0 1 0
chr17:38919648|38919817 hsa-miR-1207-5p 1 0 0
chr17:38919648|38919817 hsa-miR-1233-5p 1 0 0
chr17:38919648|38919817 hsa-miR-1273h-5p 1 0 0
chr17:38919648|38919817 hsa-miR-4763-3p 1 0 0
chr17:38919648|38919817 hsa-miR-6778-5p 1 0 0
chr17:38919648|38919817 hsa-miR-6816-5p 1 0 0
chr17:38919648|38919817 hsa-miR-6870-5p 1 0 0
chr17:38919648|38919817 hsa-miR-1343-5p 1 1 0
chr17:38919648|38919817 hsa-miR-6743-5p 1 1 0
chr17:38919648|38919817 hsa-miR-6752-5p 1 0 0
chr17:38919648|38919817 hsa-miR-6754-5p 1 1 0
chr17:38919648|38919817 hsa-miR-6756-5p 1 0 0
chr17:38919648|38919817 hsa-miR-6803-5p 1 1 0
chr17:38919648|38919817 hsa-miR-6813-5p 1 0 0
chr17:38919648|38919817 hsa-miR-1249-5p 1 0 0
chr17:38919648|38919817 hsa-miR-6751-5p 1 0 0
chr17:38919648|38919817 hsa-miR-6779-5p 1 0 0
chr17:38919648|38919817 hsa-miR-6797-5p 1 0 0
chr17:38919648|38919817 hsa-miR-6808-5p 1 0 0
chr17:38919648|38919817 hsa-miR-6879-5p 1 0 0
chr17:38919648|38919817 hsa-miR-7111-5p 1 0 0
chr17:38919648|38919817 hsa-miR-3620-5p 1 1 0
chr17:38919648|38919817 hsa-miR-4728-5p 1 1 0
chr17:38919648|38919817 hsa-miR-5196-5p 1 0 0
chr17:38919648|38919817 hsa-miR-6780b-5p 1 0 0
chr17:38919648|38919817 hsa-miR-1237-5p 1 0 0
chr17:38919648|38919817 hsa-miR-328-5p 1 1 0
chr17:38919648|38919817 hsa-miR-4649-5p 1 0 0
chr17:38919648|38919817 hsa-miR-6795-5p 1 1 0
chr17:38919648|38919817 hsa-miR-6846-5p 1 1 0
chr17:38919648|38919817 hsa-miR-6848-5p 1 1 0
chr17:38919648|38919817 hsa-miR-6858-5p 0 1 0
chr17:38919648|38919817 hsa-miR-6883-5p 1 1 0
chr17:38919648|38919817 hsa-miR-4723-5p 1 0 0
chr17:38919648|38919817 hsa-miR-3940-5p 1 1 0
chr17:38919648|38919817 hsa-miR-1914-3p 1 0 0
chr17:38919648|38919817 hsa-miR-4700-5p 0 1 0
chr17:38919648|38919817 hsa-miR-3679-5p 1 0 0
chr17:38919648|38919817 hsa-miR-6785-5p 1 1 0
chr17:38919648|38919817 hsa-miR-4667-5p 1 1 0
chr17:38919648|38919817 hsa-miR-6791-5p 1 0 0
chr17:38919648|38919817 hsa-miR-6893-3p 0 1 0
chr17:38919648|38919817 hsa-miR-4756-5p 0 1 0
chr17:38919648|38919817 hsa-miR-1295b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:38919648|38919817
ORF Type ORF1
Protein Length 51
Nucleotide Length 156
Protein Sequence MVFSLPQPPGSGLGGRSSLLLMGRCLRAFHDLPSPAQCQVDLELHKVSRDH
Nucleotide Sequence TTGGTCTTCAGCCTCCCTCAGCCCCCAGGATCTGGGTTAGGTGGCCGCTCCTCCCTGCTCCTCATGGGAAGATGTCTCAGAGCCTTCCATGACCTCCCCTCCCCAGCCCAATGCCAAGTGGACTTGGAGCTGCACAAAGTCAGCAGGGACCACTAA
CircID chr17:38919648|38919817
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MTSPPQPNAKWTWSCTKSAGTTKSPR
Nucleotide Sequence ATGACCTCCCCTCCCCAGCCCAATGCCAAGTGGACTTGGAGCTGCACAAAGTCAGCAGGGACCACTAAATCTCCAAGA
CircID chr17:38919648|38919817
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MLTLCSSKSTWHWAGEGRSWKALRHLPMRSREERPPNPDPGG
Nucleotide Sequence CTGCTGACTTTGTGCAGCTCCAAGTCCACTTGGCATTGGGCTGGGGAGGGGAGGTCATGGAAGGCTCTGAGACATCTTCCCATGAGGAGCAGGGAGGAGCGGCCACCTAACCCAGATCCTGGGGGCTGA
CircID chr17:38919648|38919817
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MALGWGGEVMEGSETSSHEEQGGAAT
Nucleotide Sequence TTGGCATTGGGCTGGGGAGGGGAGGTCATGGAAGGCTCTGAGACATCTTCCCATGAGGAGCAGGGAGGAGCGGCCACCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab