CircRNA Information

General Information
circRNA Basic Information
CircID chr17:3903325|3903947
Strand -
CircType exon
Host Gene ENSG00000108405.3;
Algorism CIRI2;
Sequence CTCCTCCACCAGGTTGCGCCTGTTGACCTTGAAGCGTGGAAAGCTGATGCTGTTCTTGATGAAAAGAGTGAAGTTCTCGGCCTCTCGGAGAAGGGCAGGGCTGGAGGACACCACACGCACTCACCGCCCCTCCCCAGGAGGCCCCCTGTGTGTCCCACACAGAGCTTGGCACAGCAGGGGGTGGGCCGAGCCTCCGGGACCCGCCTGCAGCCCTGGGCTGGTGGAGGGGTGGGTGTGCTCTAGCGTGGCCAGGACCCAGGGGAATCTTCAGCCTAGGTTGCGCGGATGGGGTGAGGGTGGGGTCAGAAAAAGGGGTAAAGATCCTTTCTAGACCTAGGCCCCCCTCTGTCTGGCCTGGGACCCTGTTCTTAGCTCTCTGGAAGGTCAGAGTGTTACCGCGGGATGTCGTCATCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:3903325|3903947 hsa-miR-141-5p 0 0 1
chr17:3903325|3903947 hsa-miR-141-3p 0 0 1
chr17:3903325|3903947 hsa-miR-146a-5p 0 0 1
chr17:3903325|3903947 hsa-miR-146a-3p 0 0 1
chr17:3903325|3903947 hsa-miR-200a-5p 0 0 1
chr17:3903325|3903947 hsa-miR-200a-3p 0 0 1
chr17:3903325|3903947 hsa-miR-370-5p 0 0 1
chr17:3903325|3903947 hsa-miR-370-3p 0 0 1
chr17:3903325|3903947 hsa-miR-505-5p 0 0 1
chr17:3903325|3903947 hsa-miR-505-3p 0 0 1
chr17:3903325|3903947 hsa-miR-588 -5 1 1
chr17:3903325|3903947 hsa-miR-601 -8 0 1
chr17:3903325|3903947 hsa-miR-610 -1 0 1
chr17:3903325|3903947 hsa-miR-645 -4 0 1
chr17:3903325|3903947 hsa-miR-421 -1 0 1
chr17:3903325|3903947 hsa-miR-766-5p 0 0 1
chr17:3903325|3903947 hsa-miR-766-3p 0 0 1
chr17:3903325|3903947 hsa-miR-765 0 0 1
chr17:3903325|3903947 hsa-miR-937-5p 0 0 1
chr17:3903325|3903947 hsa-miR-937-3p 0 0 1
chr17:3903325|3903947 hsa-miR-938 1 0 1
chr17:3903325|3903947 hsa-miR-939-5p 0 0 1
chr17:3903325|3903947 hsa-miR-939-3p 0 0 1
chr17:3903325|3903947 hsa-miR-1226-5p 0 0 1
chr17:3903325|3903947 hsa-miR-1226-3p 0 0 1
chr17:3903325|3903947 hsa-miR-1227-5p 0 0 1
chr17:3903325|3903947 hsa-miR-1227-3p 0 0 1
chr17:3903325|3903947 hsa-miR-1205 -4 0 1
chr17:3903325|3903947 hsa-miR-1255a -1 0 1
chr17:3903325|3903947 hsa-miR-1324 3 0 1
chr17:3903325|3903947 hsa-miR-490-3p -2 1 1
chr17:3903325|3903947 hsa-miR-423-5p -18 1 1
chr17:3903325|3903947 hsa-miR-525-5p -6 0 1
chr17:3903325|3903947 hsa-miR-331-3p -14 1 1
chr17:3903325|3903947 hsa-miR-520a-5p -5 0 1
chr17:3903325|3903947 hsa-miR-1302 -1 1 1
chr17:3903325|3903947 hsa-miR-146b-5p -9 0 1
chr17:3903325|3903947 hsa-miR-548b-3p -3 0 1
chr17:3903325|3903947 hsa-miR-1255b 0 0 1
chr17:3903325|3903947 hsa-miR-220c 0 0 1
chr17:3903325|3903947 hsa-miR-644 0 0 1
chr17:3903325|3903947 hsa-miR-147 0 0 1
chr17:3903325|3903947 hsa-miR-484 0 1 0
chr17:3903325|3903947 hsa-miR-661 -22 1 0
chr17:3903325|3903947 hsa-miR-3155a -10 1 0
chr17:3903325|3903947 hsa-miR-4298 -8 1 0
chr17:3903325|3903947 hsa-miR-4281 -13 1 0
chr17:3903325|3903947 hsa-miR-4292 -13 1 0
chr17:3903325|3903947 hsa-miR-3621 -7 1 0
chr17:3903325|3903947 hsa-miR-4449 -13 1 0
chr17:3903325|3903947 hsa-miR-4648 -4 1 0
chr17:3903325|3903947 hsa-miR-6075 -11 1 0
chr17:3903325|3903947 hsa-miR-8089 -10 1 0
chr17:3903325|3903947 hsa-miR-6825-5p -10 1 0
chr17:3903325|3903947 hsa-miR-1972 -12 1 0
chr17:3903325|3903947 hsa-miR-6720-5p -11 1 0
chr17:3903325|3903947 hsa-miR-6880-5p 0 1 0
chr17:3903325|3903947 hsa-miR-4755-3p -14 1 0
chr17:3903325|3903947 hsa-miR-3189-5p -22 1 0
chr17:3903325|3903947 hsa-miR-6849-3p -13 1 0
chr17:3903325|3903947 hsa-miR-6832-3p -5 1 0
chr17:3903325|3903947 hsa-miR-3180-3p -16 1 0
chr17:3903325|3903947 hsa-miR-6805-5p -12 1 0
chr17:3903325|3903947 hsa-miR-2467-5p -10 1 0
chr17:3903325|3903947 hsa-miR-1343-3p -13 1 0
chr17:3903325|3903947 hsa-miR-615-5p -14 1 0
chr17:3903325|3903947 hsa-miR-3691-5p 0 1 0
chr17:3903325|3903947 hsa-miR-149-3p -11 1 0
chr17:3903325|3903947 hsa-miR-6742-3p -12 1 0
chr17:3903325|3903947 hsa-miR-4640-3p -5 1 0
chr17:3903325|3903947 hsa-miR-574-5p -16 1 0
chr17:3903325|3903947 hsa-miR-3190-5p -14 1 0
chr17:3903325|3903947 hsa-miR-6887-3p -8 1 0
chr17:3903325|3903947 hsa-miR-4773 -8 1 0
chr17:3903325|3903947 hsa-miR-6752-3p -3 1 0
chr17:3903325|3903947 hsa-miR-6865-3p -14 1 0
chr17:3903325|3903947 hsa-miR-6886-3p -6 1 0
chr17:3903325|3903947 hsa-miR-5088-3p -8 1 0
chr17:3903325|3903947 hsa-miR-6802-3p -11 1 0
chr17:3903325|3903947 hsa-miR-3192-3p -9 1 0
chr17:3903325|3903947 hsa-miR-4750-3p -15 1 0
chr17:3903325|3903947 hsa-miR-3173-5p -10 1 0
chr17:3903325|3903947 hsa-miR-6779-3p -8 1 0
chr17:3903325|3903947 hsa-miR-4714-3p -4 1 0
chr17:3903325|3903947 hsa-miR-3162-3p -16 1 0
chr17:3903325|3903947 hsa-miR-1228-3p -14 1 0
chr17:3903325|3903947 hsa-miR-4714-5p -12 1 0
chr17:3903325|3903947 hsa-miR-10401-5p -12 1 0
chr17:3903325|3903947 hsa-miR-6763-5p -8 1 0
chr17:3903325|3903947 hsa-miR-6866-3p -9 1 0
chr17:3903325|3903947 hsa-miR-1915-3p -21 1 0
chr17:3903325|3903947 hsa-miR-4685-5p -20 1 0
chr17:3903325|3903947 hsa-miR-6883-5p -8 1 0
chr17:3903325|3903947 hsa-miR-6885-5p -9 1 0
chr17:3903325|3903947 hsa-miR-1266-5p -17 1 0
chr17:3903325|3903947 hsa-miR-6736-5p -18 1 0
chr17:3903325|3903947 hsa-miR-4700-5p -6 1 0
chr17:3903325|3903947 hsa-miR-10398-3p -19 1 0
chr17:3903325|3903947 hsa-miR-6785-5p -12 1 0
chr17:3903325|3903947 hsa-miR-6791-5p -17 1 0
chr17:3903325|3903947 hsa-miR-6784-3p -11 1 0
chr17:3903325|3903947 hsa-miR-6792-3p -11 1 0
chr17:3903325|3903947 hsa-miR-6862-3p -18 1 0
chr17:3903325|3903947 hsa-miR-6837-5p -14 1 0
chr17:3903325|3903947 hsa-miR-11181-5p -11 1 0
chr17:3903325|3903947 hsa-miR-6512-3p -4 1 0
chr17:3903325|3903947 hsa-miR-7114-3p -15 1 0
chr17:3903325|3903947 hsa-miR-4701-5p -25 1 0
chr17:3903325|3903947 hsa-miR-4691-5p -13 1 0
chr17:3903325|3903947 hsa-miR-3619-5p -14 1 0
chr17:3903325|3903947 hsa-miR-4690-3p -10 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:3903325|3903947
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MAQQGVGRASGTRLQPWAGGGVGVL
Nucleotide Sequence TTGGCACAGCAGGGGGTGGGCCGAGCCTCCGGGACCCGCCTGCAGCCCTGGGCTGGTGGAGGGGTGGGTGTGCTCTAG
CircID chr17:3903325|3903947
ORF Type ORF2
Protein Length 105
Nucleotide Length 318
Protein Sequence MRLLTLKRGKLMLFLMKRVKFSASRRRAGLEDTTRTHRPSPGGPLCVPHRAWHSRGWAEPPGPACSPGLVEGWVCSSVARTQGNLQPRLRGWGEGGVRKRGKDPF
Nucleotide Sequence TTGCGCCTGTTGACCTTGAAGCGTGGAAAGCTGATGCTGTTCTTGATGAAAAGAGTGAAGTTCTCGGCCTCTCGGAGAAGGGCAGGGCTGGAGGACACCACACGCACTCACCGCCCCTCCCCAGGAGGCCCCCTGTGTGTCCCACACAGAGCTTGGCACAGCAGGGGGTGGGCCGAGCCTCCGGGACCCGCCTGCAGCCCTGGGCTGGTGGAGGGGTGGGTGTGCTCTAGCGTGGCCAGGACCCAGGGGAATCTTCAGCCTAGGTTGCGCGGATGGGGTGAGGGTGGGGTCAGAAAAAGGGGTAAAGATCCTTTCTAG
CircID chr17:3903325|3903947
ORF Type ORF3
Protein Length 68
Nucleotide Length 204
Protein Sequence MGWWRGGCALAWPGPRGIFSLGCADGVRVGSEKGVKILSRPRPPSVWPGTLFLALWKVRVLPRDVVIH
Nucleotide Sequence CTGGGCTGGTGGAGGGGTGGGTGTGCTCTAGCGTGGCCAGGACCCAGGGGAATCTTCAGCCTAGGTTGCGCGGATGGGGTGAGGGTGGGGTCAGAAAAAGGGGTAAAGATCCTTTCTAGACCTAGGCCCCCCTCTGTCTGGCCTGGGACCCTGTTCTTAGCTCTCTGGAAGGTCAGAGTGTTACCGCGGGATGTCGTCATCCAC
CircID chr17:3903325|3903947
ORF Type ORF4
Protein Length 45
Nucleotide Length 135
Protein Sequence MGRGGECVWCPPALPFSERPRTSLFSSRTASAFHASRSTGATWWR
Nucleotide Sequence CTGGGGAGGGGCGGTGAGTGCGTGTGGTGTCCTCCAGCCCTGCCCTTCTCCGAGAGGCCGAGAACTTCACTCTTTTCATCAAGAACAGCATCAGCTTTCCACGCTTCAAGGTCAACAGGCGCAACCTGGTGGAGG
CircID chr17:3903325|3903947
ORF Type ORF5
Protein Length 137
Nucleotide Length 411
Protein Sequence MTTSRGNTLTFQRAKNRVPGQTEGGLGLERIFTPFSDPTLTPSAQPRLKIPLGPGHARAHPPLHQPRAAGGSRRLGPPPAVPSSVWDTQGASWGGAVSACGVLQPCPSPRGRELHSFHQEQHQLSTLQGQQAQPGGG
Nucleotide Sequence ATGACGACATCCCGCGGTAACACTCTGACCTTCCAGAGAGCTAAGAACAGGGTCCCAGGCCAGACAGAGGGGGGCCTAGGTCTAGAAAGGATCTTTACCCCTTTTTCTGACCCCACCCTCACCCCATCCGCGCAACCTAGGCTGAAGATTCCCCTGGGTCCTGGCCACGCTAGAGCACACCCACCCCTCCACCAGCCCAGGGCTGCAGGCGGGTCCCGGAGGCTCGGCCCACCCCCTGCTGTGCCAAGCTCTGTGTGGGACACACAGGGGGCCTCCTGGGGAGGGGCGGTGAGTGCGTGTGGTGTCCTCCAGCCCTGCCCTTCTCCGAGAGGCCGAGAACTTCACTCTTTTCATCAAGAACAGCATCAGCTTTCCACGCTTCAAGGTCAACAGGCGCAACCTGGTGGAGGA
CircID chr17:3903325|3903947
ORF Type ORF6
Protein Length 43
Nucleotide Length 132
Protein Sequence MATLEHTHPSTSPGLQAGPGGSAHPLLCQALCGTHRGPPGEGR
Nucleotide Sequence CTGGCCACGCTAGAGCACACCCACCCCTCCACCAGCCCAGGGCTGCAGGCGGGTCCCGGAGGCTCGGCCCACCCCCTGCTGTGCCAAGCTCTGTGTGGGACACACAGGGGGCCTCCTGGGGAGGGGCGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab