CircRNA Information

General Information
circRNA Basic Information
CircID chr17:3925121|3925337
Strand +
CircType exon
Host Gene ENSG00000074370.16;
Algorism CIRI2;
Sequence CACACTCGCCCACTTGCCCACCGGGTCCCGCCGGATAAATGACAGGCCCGAGGTCAGAATGGCCATCCCCGGGCCCCGTCCTGGGGTCTCTGTCCCCACTTCCTTCTGGCCTGGGAGGTCTGTAATTCCTGTCTCCTGGACTCTCCTGGGAAGTTCCCTGCTCTGCAGCTCTGGCCCAGGAGCTGCAGGCTGGGAGGGGGCAGCCAAGAAGCCGGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:3925121|3925337 hsa-miR-558 0 0 1
chr17:3925121|3925337 hsa-miR-596 0 1 1
chr17:3925121|3925337 hsa-miR-604 0 0 1
chr17:3925121|3925337 hsa-miR-616-5p 0 0 1
chr17:3925121|3925337 hsa-miR-616-3p 0 0 1
chr17:3925121|3925337 hsa-miR-647 0 1 1
chr17:3925121|3925337 hsa-miR-1301-5p 0 0 1
chr17:3925121|3925337 hsa-miR-1301-3p 0 0 1
chr17:3925121|3925337 hsa-miR-541-5p 0 0 1
chr17:3925121|3925337 hsa-miR-541-3p 0 0 1
chr17:3925121|3925337 hsa-miR-665 1 1 1
chr17:3925121|3925337 hsa-miR-1252-5p 0 0 1
chr17:3925121|3925337 hsa-miR-1252-3p 0 0 1
chr17:3925121|3925337 hsa-miR-491-5p 0 0 1
chr17:3925121|3925337 hsa-miR-542-5p 0 1 1
chr17:3925121|3925337 hsa-miR-1184 0 0 1
chr17:3925121|3925337 hsa-miR-574-5p 0 0 1
chr17:3925121|3925337 hsa-miR-654-5p 0 0 1
chr17:3925121|3925337 hsa-miR-324-3p 0 0 1
chr17:3925121|3925337 hsa-miR-492 1 0 0
chr17:3925121|3925337 hsa-miR-663a 1 1 0
chr17:3925121|3925337 hsa-miR-1469 1 0 0
chr17:3925121|3925337 hsa-miR-1538 0 1 0
chr17:3925121|3925337 hsa-miR-1913 0 1 0
chr17:3925121|3925337 hsa-miR-2861 1 1 0
chr17:3925121|3925337 hsa-miR-3147 1 0 0
chr17:3925121|3925337 hsa-miR-4281 1 0 0
chr17:3925121|3925337 hsa-miR-3649 1 0 0
chr17:3925121|3925337 hsa-miR-4428 0 1 0
chr17:3925121|3925337 hsa-miR-4471 0 1 0
chr17:3925121|3925337 hsa-miR-4535 1 0 0
chr17:3925121|3925337 hsa-miR-4648 1 0 0
chr17:3925121|3925337 hsa-miR-4689 1 0 0
chr17:3925121|3925337 hsa-miR-4729 0 1 0
chr17:3925121|3925337 hsa-miR-5787 1 0 0
chr17:3925121|3925337 hsa-miR-8072 1 0 0
chr17:3925121|3925337 hsa-miR-8089 1 0 0
chr17:3925121|3925337 hsa-miR-103a-2-5p 0 1 0
chr17:3925121|3925337 hsa-miR-4433b-3p 1 0 0
chr17:3925121|3925337 hsa-miR-6840-3p 0 1 0
chr17:3925121|3925337 hsa-miR-1247-3p 1 1 0
chr17:3925121|3925337 hsa-miR-215-3p 0 1 0
chr17:3925121|3925337 hsa-miR-1972 0 1 0
chr17:3925121|3925337 hsa-miR-4768-3p 0 1 0
chr17:3925121|3925337 hsa-miR-6089 1 0 0
chr17:3925121|3925337 hsa-miR-6762-3p 0 1 0
chr17:3925121|3925337 hsa-miR-4655-5p 1 0 0
chr17:3925121|3925337 hsa-miR-6849-3p 0 1 0
chr17:3925121|3925337 hsa-miR-6742-5p 1 0 0
chr17:3925121|3925337 hsa-miR-6829-5p 0 1 0
chr17:3925121|3925337 hsa-miR-6732-5p 1 0 0
chr17:3925121|3925337 hsa-miR-6810-5p 1 1 0
chr17:3925121|3925337 hsa-miR-6882-3p 0 1 0
chr17:3925121|3925337 hsa-miR-6786-5p 1 1 0
chr17:3925121|3925337 hsa-miR-939-3p 0 1 0
chr17:3925121|3925337 hsa-miR-1226-5p 1 0 0
chr17:3925121|3925337 hsa-miR-4783-3p 1 0 0
chr17:3925121|3925337 hsa-miR-4640-5p 1 1 0
chr17:3925121|3925337 hsa-miR-1908-5p 1 0 0
chr17:3925121|3925337 hsa-miR-652-5p 1 0 0
chr17:3925121|3925337 hsa-miR-1228-5p 1 0 0
chr17:3925121|3925337 hsa-miR-4732-5p 0 1 0
chr17:3925121|3925337 hsa-miR-4713-3p 1 0 0
chr17:3925121|3925337 hsa-miR-6749-5p 1 1 0
chr17:3925121|3925337 hsa-miR-4743-5p 1 0 0
chr17:3925121|3925337 hsa-miR-4787-5p 1 0 0
chr17:3925121|3925337 hsa-miR-3158-5p 0 1 0
chr17:3925121|3925337 hsa-miR-6781-5p 0 1 0
chr17:3925121|3925337 hsa-miR-1289 0 1 0
chr17:3925121|3925337 hsa-miR-6887-3p 0 1 0
chr17:3925121|3925337 hsa-miR-744-5p 1 0 0
chr17:3925121|3925337 hsa-miR-6801-5p 0 1 0
chr17:3925121|3925337 hsa-miR-4750-5p 1 0 0
chr17:3925121|3925337 hsa-miR-1296-3p 1 1 0
chr17:3925121|3925337 hsa-miR-6790-3p 0 1 0
chr17:3925121|3925337 hsa-miR-6769b-5p 1 0 0
chr17:3925121|3925337 hsa-miR-6775-5p 1 0 0
chr17:3925121|3925337 hsa-miR-6726-5p 1 0 0
chr17:3925121|3925337 hsa-miR-6743-5p 1 0 0
chr17:3925121|3925337 hsa-miR-6769a-5p 1 0 0
chr17:3925121|3925337 hsa-miR-6851-5p 1 0 0
chr17:3925121|3925337 hsa-miR-6774-5p 1 0 0
chr17:3925121|3925337 hsa-miR-6875-5p 1 0 0
chr17:3925121|3925337 hsa-miR-6836-5p 1 0 0
chr17:3925121|3925337 hsa-miR-10396a-5p 1 1 0
chr17:3925121|3925337 hsa-miR-10396b-5p 1 1 0
chr17:3925121|3925337 hsa-miR-328-5p 1 0 0
chr17:3925121|3925337 hsa-miR-4685-5p 0 1 0
chr17:3925121|3925337 hsa-miR-4726-5p 1 1 0
chr17:3925121|3925337 hsa-miR-4745-3p 0 1 0
chr17:3925121|3925337 hsa-miR-4745-5p 1 0 0
chr17:3925121|3925337 hsa-miR-4749-5p 1 0 0
chr17:3925121|3925337 hsa-miR-6729-5p 0 1 0
chr17:3925121|3925337 hsa-miR-6795-5p 1 0 0
chr17:3925121|3925337 hsa-miR-6848-5p 1 0 0
chr17:3925121|3925337 hsa-miR-6887-5p 1 0 0
chr17:3925121|3925337 hsa-miR-6889-5p 1 0 0
chr17:3925121|3925337 hsa-miR-4758-5p 1 0 0
chr17:3925121|3925337 hsa-miR-10398-3p 1 0 0
chr17:3925121|3925337 hsa-miR-6750-5p 0 1 0
chr17:3925121|3925337 hsa-miR-6724-5p 1 0 0
chr17:3925121|3925337 hsa-miR-103a-1-5p 0 1 0
chr17:3925121|3925337 hsa-miR-4482-5p 1 0 0
chr17:3925121|3925337 hsa-miR-10399-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:3925121|3925337
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MAWEVCNSCLLDSPGKFPALQLWPRSCRLGGGSQEAG
Nucleotide Sequence CTGGCCTGGGAGGTCTGTAATTCCTGTCTCCTGGACTCTCCTGGGAAGTTCCCTGCTCTGCAGCTCTGGCCCAGGAGCTGCAGGCTGGGAGGGGGCAGCCAAGAAGCCGGA
CircID chr17:3925121|3925337
ORF Type ORF2
Protein Length 68
Nucleotide Length 204
Protein Sequence MPTGSRRINDRPEVRMAIPGPRPGVSVPTSFWPGRSVIPVSWTLLGSSLLCSSGPGAAGWEGAAKKPE
Nucleotide Sequence TTGCCCACCGGGTCCCGCCGGATAAATGACAGGCCCGAGGTCAGAATGGCCATCCCCGGGCCCCGTCCTGGGGTCTCTGTCCCCACTTCCTTCTGGCCTGGGAGGTCTGTAATTCCTGTCTCCTGGACTCTCCTGGGAAGTTCCCTGCTCTGCAGCTCTGGCCCAGGAGCTGCAGGCTGGGAGGGGGCAGCCAAGAAGCCGGAG
CircID chr17:3925121|3925337
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MTGPRSEWPSPGPVLGSLSPLPSGLGGL
Nucleotide Sequence ATGACAGGCCCGAGGTCAGAATGGCCATCCCCGGGCCCCGTCCTGGGGTCTCTGTCCCCACTTCCTTCTGGCCTGGGAGGTCTGTAA
CircID chr17:3925121|3925337
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MSPGLSWEVPCSAALAQELQAGRGQPRSR
Nucleotide Sequence CTGTCTCCTGGACTCTCCTGGGAAGTTCCCTGCTCTGCAGCTCTGGCCCAGGAGCTGCAGGCTGGGAGGGGGCAGCCAAGAAGCCGG
CircID chr17:3925121|3925337
ORF Type ORF5
Protein Length 69
Nucleotide Length 207
Protein Sequence MAAPSQPAAPGPELQSRELPRRVQETGITDLPGQKEVGTETPGRGPGMAILTSGLSFIRRDPVGKWASV
Nucleotide Sequence TTGGCTGCCCCCTCCCAGCCTGCAGCTCCTGGGCCAGAGCTGCAGAGCAGGGAACTTCCCAGGAGAGTCCAGGAGACAGGAATTACAGACCTCCCAGGCCAGAAGGAAGTGGGGACAGAGACCCCAGGACGGGGCCCGGGGATGGCCATTCTGACCTCGGGCCTGTCATTTATCCGGCGGGACCCGGTGGGCAAGTGGGCGAGTGTG
CircID chr17:3925121|3925337
ORF Type ORF6
Protein Length 49
Nucleotide Length 150
Protein Sequence MPPPSLQLLGQSCRAGNFPGESRRQELQTSQARRKWGQRPQDGARGWPF
Nucleotide Sequence CTGCCCCCTCCCAGCCTGCAGCTCCTGGGCCAGAGCTGCAGAGCAGGGAACTTCCCAGGAGAGTCCAGGAGACAGGAATTACAGACCTCCCAGGCCAGAAGGAAGTGGGGACAGAGACCCCAGGACGGGGCCCGGGGATGGCCATTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab