CircRNA Information

General Information
circRNA Basic Information
CircID chr17:39525880|39526144
Strand -
CircType exon
Host Gene ENSG00000167258.12;
Algorism CIRI2;
Sequence ACAACAGCTGAATCAAAGTGAATTGGCAGTGTTATTAAACCTGCTGCAGAGCCAAACCGACCTGAGCATCCCTCAAATGGCACAGCTGCTTAACATCCACTCCAACCCAGAGATGCAGCAGCAGCTGGAAGCCCTGAACCAATCCATCAGTGCCCTGACGGAAGCTACTTCCCAGCAGCAGGACTCAGAGACCATGGCCCCAGAGGAGTCTTTGAAGGAAGCACCCTCTGCCCCAGTGATCCTGCCTTCAGCAGAACAGACGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:39525880|39526144 hsa-miR-107 0 0 1
chr17:39525880|39526144 hsa-miR-205-5p 0 0 1
chr17:39525880|39526144 hsa-miR-205-3p 0 0 1
chr17:39525880|39526144 hsa-miR-214-5p 0 0 1
chr17:39525880|39526144 hsa-miR-214-3p 0 0 1
chr17:39525880|39526144 hsa-miR-122-5p 0 0 1
chr17:39525880|39526144 hsa-miR-122-3p 0 0 1
chr17:39525880|39526144 hsa-miR-141-5p 0 0 1
chr17:39525880|39526144 hsa-miR-141-3p 0 0 1
chr17:39525880|39526144 hsa-miR-200a-5p 0 0 1
chr17:39525880|39526144 hsa-miR-200a-3p 0 0 1
chr17:39525880|39526144 hsa-miR-370-5p 0 0 1
chr17:39525880|39526144 hsa-miR-370-3p 0 0 1
chr17:39525880|39526144 hsa-miR-326 0 1 1
chr17:39525880|39526144 hsa-miR-562 0 1 1
chr17:39525880|39526144 hsa-miR-593-5p 0 0 1
chr17:39525880|39526144 hsa-miR-593-3p 0 0 1
chr17:39525880|39526144 hsa-miR-637 1 0 1
chr17:39525880|39526144 hsa-miR-646 0 1 1
chr17:39525880|39526144 hsa-miR-657 0 0 1
chr17:39525880|39526144 hsa-miR-659-5p 0 0 1
chr17:39525880|39526144 hsa-miR-659-3p 0 0 1
chr17:39525880|39526144 hsa-miR-760 1 0 1
chr17:39525880|39526144 hsa-miR-940 0 0 1
chr17:39525880|39526144 hsa-miR-1227-5p 0 0 1
chr17:39525880|39526144 hsa-miR-1227-3p 0 0 1
chr17:39525880|39526144 hsa-miR-1205 0 0 1
chr17:39525880|39526144 hsa-miR-1304-5p 0 0 1
chr17:39525880|39526144 hsa-miR-1304-3p 0 0 1
chr17:39525880|39526144 hsa-miR-1246 0 0 1
chr17:39525880|39526144 hsa-miR-486-3p 0 0 1
chr17:39525880|39526144 hsa-miR-1184 0 1 1
chr17:39525880|39526144 hsa-miR-509-3p 0 0 1
chr17:39525880|39526144 hsa-miR-1207-3p 0 0 1
chr17:39525880|39526144 hsa-miR-330-5p 0 1 1
chr17:39525880|39526144 hsa-miR-516a-3p 0 1 1
chr17:39525880|39526144 hsa-miR-103 0 0 1
chr17:39525880|39526144 hsa-miR-608 1 1 0
chr17:39525880|39526144 hsa-miR-761 0 1 0
chr17:39525880|39526144 hsa-miR-1231 1 0 0
chr17:39525880|39526144 hsa-miR-3621 1 0 0
chr17:39525880|39526144 hsa-miR-3907 1 0 0
chr17:39525880|39526144 hsa-miR-3921 0 1 0
chr17:39525880|39526144 hsa-miR-4507 0 1 0
chr17:39525880|39526144 hsa-miR-4510 1 0 0
chr17:39525880|39526144 hsa-miR-4518 0 1 0
chr17:39525880|39526144 hsa-miR-4525 1 0 0
chr17:39525880|39526144 hsa-miR-1587 1 0 0
chr17:39525880|39526144 hsa-miR-4651 1 0 0
chr17:39525880|39526144 hsa-miR-4660 1 0 0
chr17:39525880|39526144 hsa-miR-4688 1 0 0
chr17:39525880|39526144 hsa-miR-4739 1 0 0
chr17:39525880|39526144 hsa-miR-5090 1 0 0
chr17:39525880|39526144 hsa-miR-5787 1 0 0
chr17:39525880|39526144 hsa-miR-6127 1 0 0
chr17:39525880|39526144 hsa-miR-6133 1 0 0
chr17:39525880|39526144 hsa-miR-8057 0 1 0
chr17:39525880|39526144 hsa-miR-8089 1 0 0
chr17:39525880|39526144 hsa-miR-105-3p 1 0 0
chr17:39525880|39526144 hsa-miR-3194-3p 1 0 0
chr17:39525880|39526144 hsa-miR-192-3p 0 1 0
chr17:39525880|39526144 hsa-miR-6854-5p 1 0 0
chr17:39525880|39526144 hsa-miR-3692-5p 0 1 0
chr17:39525880|39526144 hsa-miR-6089 1 0 0
chr17:39525880|39526144 hsa-miR-7160-5p 1 0 0
chr17:39525880|39526144 hsa-miR-6727-5p 1 0 0
chr17:39525880|39526144 hsa-miR-3180-3p 1 0 0
chr17:39525880|39526144 hsa-miR-6782-5p 1 0 0
chr17:39525880|39526144 hsa-miR-6514-5p 1 1 0
chr17:39525880|39526144 hsa-miR-3934-3p 1 1 0
chr17:39525880|39526144 hsa-miR-6786-5p 1 0 0
chr17:39525880|39526144 hsa-miR-1226-5p 1 0 0
chr17:39525880|39526144 hsa-miR-1229-5p 1 0 0
chr17:39525880|39526144 hsa-miR-4640-5p 1 0 0
chr17:39525880|39526144 hsa-miR-3127-5p 1 1 0
chr17:39525880|39526144 hsa-miR-296-3p 1 0 0
chr17:39525880|39526144 hsa-miR-6834-5p 0 1 0
chr17:39525880|39526144 hsa-miR-6802-5p 1 0 0
chr17:39525880|39526144 hsa-miR-2115-5p 0 1 0
chr17:39525880|39526144 hsa-miR-3681-5p 0 1 0
chr17:39525880|39526144 hsa-miR-3158-3p 0 1 0
chr17:39525880|39526144 hsa-miR-6837-3p 0 1 0
chr17:39525880|39526144 hsa-miR-6508-3p 0 1 0
chr17:39525880|39526144 hsa-miR-6838-3p 0 1 0
chr17:39525880|39526144 hsa-miR-1207-5p 1 0 0
chr17:39525880|39526144 hsa-miR-1233-5p 1 0 0
chr17:39525880|39526144 hsa-miR-4763-3p 1 0 0
chr17:39525880|39526144 hsa-miR-6812-5p 1 1 0
chr17:39525880|39526144 hsa-miR-6893-5p 0 1 0
chr17:39525880|39526144 hsa-miR-6775-5p 1 0 0
chr17:39525880|39526144 hsa-miR-6743-5p 1 0 0
chr17:39525880|39526144 hsa-miR-5189-5p 1 0 0
chr17:39525880|39526144 hsa-miR-1909-3p 1 0 0
chr17:39525880|39526144 hsa-miR-6735-5p 1 1 0
chr17:39525880|39526144 hsa-miR-6777-5p 1 0 0
chr17:39525880|39526144 hsa-miR-6848-5p 1 0 0
chr17:39525880|39526144 hsa-miR-939-5p 1 0 0
chr17:39525880|39526144 hsa-miR-3085-5p 1 1 0
chr17:39525880|39526144 hsa-miR-3940-5p 1 1 0
chr17:39525880|39526144 hsa-miR-7843-5p 1 1 0
chr17:39525880|39526144 hsa-miR-4646-5p 0 1 0
chr17:39525880|39526144 hsa-miR-6849-5p 0 1 0
chr17:39525880|39526144 hsa-miR-6762-5p 1 1 0
chr17:39525880|39526144 hsa-miR-6848-3p 0 1 0
chr17:39525880|39526144 hsa-miR-6843-3p 0 1 0
chr17:39525880|39526144 hsa-miR-516b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:39525880|39526144
ORF Type ORF1
Protein Length 86
Nucleotide Length 258
Protein Sequence MNQSELAVLLNLLQSQTDLSIPQMAQLLNIHSNPEMQQQLEALNQSISALTEATSQQQDSETMAPEESLKEAPSAPVILPSAEQTT
Nucleotide Sequence CTGAATCAAAGTGAATTGGCAGTGTTATTAAACCTGCTGCAGAGCCAAACCGACCTGAGCATCCCTCAAATGGCACAGCTGCTTAACATCCACTCCAACCCAGAGATGCAGCAGCAGCTGGAAGCCCTGAACCAATCCATCAGTGCCCTGACGGAAGCTACTTCCCAGCAGCAGGACTCAGAGACCATGGCCCCAGAGGAGTCTTTGAAGGAAGCACCCTCTGCCCCAGTGATCCTGCCTTCAGCAGAACAGACGACC
CircID chr17:39525880|39526144
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence MLLGSSFRQGTDGLVQGFQLLLHLWVGVDVKQLCHLRDAQVGLALQQV
Nucleotide Sequence CTGCTGCTGGGAAGTAGCTTCCGTCAGGGCACTGATGGATTGGTTCAGGGCTTCCAGCTGCTGCTGCATCTCTGGGTTGGAGTGGATGTTAAGCAGCTGTGCCATTTGAGGGATGCTCAGGTCGGTTTGGCTCTGCAGCAGGTTTAA
CircID chr17:39525880|39526144
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MVSESCCWEVASVRALMDWFRASSCCCISGLEWMLSSCAI
Nucleotide Sequence ATGGTCTCTGAGTCCTGCTGCTGGGAAGTAGCTTCCGTCAGGGCACTGATGGATTGGTTCAGGGCTTCCAGCTGCTGCTGCATCTCTGGGTTGGAGTGGATGTTAAGCAGCTGTGCCATTTGA
CircID chr17:39525880|39526144
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MLKAGSLGQRVLPSKTPLGPWSLSPAAGK
Nucleotide Sequence CTGCTGAAGGCAGGATCACTGGGGCAGAGGGTGCTTCCTTCAAAGACTCCTCTGGGGCCATGGTCTCTGAGTCCTGCTGCTGGGAAGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab