CircRNA Information

General Information
circRNA Basic Information
CircID chr17:39557639|39557769
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGCTTCTCTTCTGAGATTTTTCTTCTGCCTGCCGGTTTGTTTTTGTGTCTACCTAAGAGGCATTGGATGAAGCACAGTTACTTTTCCAGGCCTCTTCCAGACAGCCTCAGCACAGTTTCCATACAGTGCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:39557639|39557769 hsa-miR-216a-5p 0 0 1
chr17:39557639|39557769 hsa-miR-216a-3p 0 0 1
chr17:39557639|39557769 hsa-miR-379-5p 0 0 1
chr17:39557639|39557769 hsa-miR-379-3p 0 0 1
chr17:39557639|39557769 hsa-miR-196b-5p 0 0 1
chr17:39557639|39557769 hsa-miR-196b-3p 0 0 1
chr17:39557639|39557769 hsa-miR-495-5p 0 0 1
chr17:39557639|39557769 hsa-miR-495-3p 0 0 1
chr17:39557639|39557769 hsa-miR-559 0 0 1
chr17:39557639|39557769 hsa-miR-626 0 0 1
chr17:39557639|39557769 hsa-miR-636 0 0 1
chr17:39557639|39557769 hsa-miR-298 0 0 1
chr17:39557639|39557769 hsa-miR-1231 0 0 1
chr17:39557639|39557769 hsa-miR-548j-5p 0 0 1
chr17:39557639|39557769 hsa-miR-548j-3p 0 0 1
chr17:39557639|39557769 hsa-miR-1299 0 0 1
chr17:39557639|39557769 hsa-miR-548g-5p 0 0 1
chr17:39557639|39557769 hsa-miR-548g-3p 0 0 1
chr17:39557639|39557769 hsa-miR-548n 0 0 1
chr17:39557639|39557769 hsa-miR-485-5p 0 0 1
chr17:39557639|39557769 hsa-miR-331-5p 0 0 1
chr17:39557639|39557769 hsa-miR-875-3p 0 1 1
chr17:39557639|39557769 hsa-miR-548b-5p 0 1 1
chr17:39557639|39557769 hsa-miR-548d-5p 0 1 1
chr17:39557639|39557769 hsa-miR-548c-3p 0 0 1
chr17:39557639|39557769 hsa-miR-548c-5p 0 1 1
chr17:39557639|39557769 hsa-miR-548a-5p 0 0 1
chr17:39557639|39557769 hsa-miR-548i 0 0 1
chr17:39557639|39557769 hsa-miR-7 0 0 1
chr17:39557639|39557769 hsa-miR-218 0 0 1
chr17:39557639|39557769 hsa-miR-1254 0 0 1
chr17:39557639|39557769 hsa-miR-196a 0 0 1
chr17:39557639|39557769 hsa-miR-548h 0 0 1
chr17:39557639|39557769 hsa-miR-3132 1 0 0
chr17:39557639|39557769 hsa-miR-3138 1 0 0
chr17:39557639|39557769 hsa-miR-3149 0 1 0
chr17:39557639|39557769 hsa-miR-548w 0 1 0
chr17:39557639|39557769 hsa-miR-3911 1 0 0
chr17:39557639|39557769 hsa-miR-3935 0 1 0
chr17:39557639|39557769 hsa-miR-3977 0 1 0
chr17:39557639|39557769 hsa-miR-4692 0 1 0
chr17:39557639|39557769 hsa-miR-4739 1 0 0
chr17:39557639|39557769 hsa-miR-4741 1 1 0
chr17:39557639|39557769 hsa-miR-548ba 0 1 0
chr17:39557639|39557769 hsa-miR-7106-5p 1 0 0
chr17:39557639|39557769 hsa-miR-4687-3p 1 1 0
chr17:39557639|39557769 hsa-miR-6806-5p 0 1 0
chr17:39557639|39557769 hsa-miR-218-5p 0 1 0
chr17:39557639|39557769 hsa-miR-2467-3p 1 0 0
chr17:39557639|39557769 hsa-miR-6866-5p 0 1 0
chr17:39557639|39557769 hsa-miR-1207-5p 1 0 0
chr17:39557639|39557769 hsa-miR-328-5p 1 0 0
chr17:39557639|39557769 hsa-miR-6831-5p 0 1 0
chr17:39557639|39557769 hsa-miR-1910-3p 0 1 0
chr17:39557639|39557769 hsa-miR-6511a-5p 0 1 0
chr17:39557639|39557769 hsa-miR-6511b-5p 1 0 0
chr17:39557639|39557769 hsa-miR-5008-3p 0 1 0
chr17:39557639|39557769 hsa-miR-3116 0 1 0
chr17:39557639|39557769 hsa-miR-6737-3p 0 1 0
chr17:39557639|39557769 hsa-miR-548az-5p 0 1 0
chr17:39557639|39557769 hsa-miR-7157-3p 0 1 0
chr17:39557639|39557769 hsa-miR-3927-3p 0 1 0
chr17:39557639|39557769 hsa-miR-548ag 0 1 0
chr17:39557639|39557769 hsa-miR-548aq-5p 0 1 0
chr17:39557639|39557769 hsa-miR-548am-5p 0 1 0
chr17:39557639|39557769 hsa-miR-548o-5p 0 1 0
chr17:39557639|39557769 hsa-miR-548ay-5p 0 1 0
chr17:39557639|39557769 hsa-miR-548ad-5p 0 1 0
chr17:39557639|39557769 hsa-miR-548ae-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:39557639|39557769
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MPAGLFLCLPKRHWMKHSYFSRPLPDSLSTVSIQC
Nucleotide Sequence CTGCCTGCCGGTTTGTTTTTGTGTCTACCTAAGAGGCATTGGATGAAGCACAGTTACTTTTCCAGGCCTCTTCCAGACAGCCTCAGCACAGTTTCCATACAGTGC
CircID chr17:39557639|39557769
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MYGNCAEAVWKRPGKVTVLHPMPLR
Nucleotide Sequence CTGTATGGAAACTGTGCTGAGGCTGTCTGGAAGAGGCCTGGAAAAGTAACTGTGCTTCATCCAATGCCTCTTAGGTAG
CircID chr17:39557639|39557769
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MCFIQCLLGRHKNKPAGRRKISEEKQ
Nucleotide Sequence CTGTGCTTCATCCAATGCCTCTTAGGTAGACACAAAAACAAACCGGCAGGCAGAAGAAAAATCTCAGAAGAGAAGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab