CircRNA Information

General Information
circRNA Basic Information
CircID chr17:39711553|39711783
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCCTCACAACAACCAGACGGGATCAGCACTGTGAGATTCCCATTTTGCAAAAAGGGAGACCAAAGCAGAGAGTTCTGTAAATTATTCAAGGTCATTGTGCTAGTGAGTGGAGGAGCGAGGATTTGAACCCAAATGGTCTGGCTCTACATTTTGTCCTCTCCCTAACACAGTCAGCCAGGATCTGAAGGCCCACTCCTGTTCCTGTGAGAGGAGGAAAGAGGTTCCCCAGGT
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:39711553|39711783 hsa-miR-27a-5p 0 0 1
chr17:39711553|39711783 hsa-miR-27a-3p 0 0 1
chr17:39711553|39711783 hsa-miR-204-5p 0 0 1
chr17:39711553|39711783 hsa-miR-204-3p 0 0 1
chr17:39711553|39711783 hsa-miR-211-5p 0 0 1
chr17:39711553|39711783 hsa-miR-211-3p 0 0 1
chr17:39711553|39711783 hsa-miR-216a-5p 0 0 1
chr17:39711553|39711783 hsa-miR-216a-3p 0 0 1
chr17:39711553|39711783 hsa-miR-27b-5p 0 0 1
chr17:39711553|39711783 hsa-miR-27b-3p 0 0 1
chr17:39711553|39711783 hsa-miR-133b 0 0 1
chr17:39711553|39711783 hsa-miR-527 0 0 1
chr17:39711553|39711783 hsa-miR-507 0 0 1
chr17:39711553|39711783 hsa-miR-557 0 0 1
chr17:39711553|39711783 hsa-miR-607 0 0 1
chr17:39711553|39711783 hsa-miR-892a 0 0 1
chr17:39711553|39711783 hsa-miR-873-5p 0 0 1
chr17:39711553|39711783 hsa-miR-873-3p 0 0 1
chr17:39711553|39711783 hsa-miR-943 0 0 1
chr17:39711553|39711783 hsa-miR-1238-5p 0 0 1
chr17:39711553|39711783 hsa-miR-1238-3p 0 0 1
chr17:39711553|39711783 hsa-miR-1294 0 0 1
chr17:39711553|39711783 hsa-miR-1247-5p 0 0 1
chr17:39711553|39711783 hsa-miR-1247-3p 0 0 1
chr17:39711553|39711783 hsa-miR-1258 0 0 1
chr17:39711553|39711783 hsa-miR-1321 0 0 1
chr17:39711553|39711783 hsa-miR-129-5p 0 1 1
chr17:39711553|39711783 hsa-miR-512-3p 0 0 1
chr17:39711553|39711783 hsa-miR-513a-5p 0 1 1
chr17:39711553|39711783 hsa-miR-518a-5p 0 0 1
chr17:39711553|39711783 hsa-miR-342-3p 0 0 1
chr17:39711553|39711783 hsa-miR-450b-5p 0 0 1
chr17:39711553|39711783 hsa-miR-128 0 0 1
chr17:39711553|39711783 hsa-miR-220c 0 0 1
chr17:39711553|39711783 hsa-miR-9 0 0 1
chr17:39711553|39711783 hsa-miR-453 0 0 1
chr17:39711553|39711783 hsa-miR-768-3p 0 0 1
chr17:39711553|39711783 hsa-miR-133a 0 0 1
chr17:39711553|39711783 hsa-miR-1182 1 0 0
chr17:39711553|39711783 hsa-miR-3175 0 1 0
chr17:39711553|39711783 hsa-miR-4268 0 1 0
chr17:39711553|39711783 hsa-miR-4281 1 0 0
chr17:39711553|39711783 hsa-miR-3668 0 1 0
chr17:39711553|39711783 hsa-miR-4651 1 0 0
chr17:39711553|39711783 hsa-miR-4698 0 1 0
chr17:39711553|39711783 hsa-miR-5100 0 1 0
chr17:39711553|39711783 hsa-miR-8085 0 1 0
chr17:39711553|39711783 hsa-miR-128-3p 0 1 0
chr17:39711553|39711783 hsa-miR-4433b-3p 1 1 0
chr17:39711553|39711783 hsa-miR-4433a-3p 1 1 0
chr17:39711553|39711783 hsa-miR-6881-3p 0 1 0
chr17:39711553|39711783 hsa-miR-3064-5p 0 1 0
chr17:39711553|39711783 hsa-miR-7154-3p 0 1 0
chr17:39711553|39711783 hsa-miR-6873-3p 0 1 0
chr17:39711553|39711783 hsa-miR-7845-5p 0 1 0
chr17:39711553|39711783 hsa-miR-6760-5p 0 1 0
chr17:39711553|39711783 hsa-miR-6782-5p 1 0 0
chr17:39711553|39711783 hsa-miR-6728-3p 1 1 0
chr17:39711553|39711783 hsa-miR-3162-5p 0 1 0
chr17:39711553|39711783 hsa-miR-135b-3p 1 0 0
chr17:39711553|39711783 hsa-miR-654-5p 1 0 0
chr17:39711553|39711783 hsa-miR-3614-3p 1 1 0
chr17:39711553|39711783 hsa-miR-1296-3p 1 0 0
chr17:39711553|39711783 hsa-miR-1285-5p 0 1 0
chr17:39711553|39711783 hsa-miR-3124-3p 0 1 0
chr17:39711553|39711783 hsa-miR-3680-5p 0 1 0
chr17:39711553|39711783 hsa-miR-3152-3p 0 1 0
chr17:39711553|39711783 hsa-miR-6756-5p 1 0 0
chr17:39711553|39711783 hsa-miR-4745-5p 1 1 0
chr17:39711553|39711783 hsa-miR-6731-5p 0 1 0
chr17:39711553|39711783 hsa-miR-541-3p 1 0 0
chr17:39711553|39711783 hsa-miR-6766-5p 1 0 0
chr17:39711553|39711783 hsa-miR-6724-5p 1 0 0
chr17:39711553|39711783 hsa-miR-6504-5p 0 1 0
chr17:39711553|39711783 hsa-miR-6843-3p 0 1 0
chr17:39711553|39711783 hsa-miR-3681-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:39711553|39711783
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MTLNNLQNSLLWSPFLQNGNLTVLIPSGCCE
Nucleotide Sequence ATGACCTTGAATAATTTACAGAACTCTCTGCTTTGGTCTCCCTTTTTGCAAAATGGGAATCTCACAGTGCTGATCCCGTCTGGTTGTTGTGAG
CircID chr17:39711553|39711783
ORF Type ORF2
Protein Length 45
Nucleotide Length 138
Protein Sequence LGNLFPPLTGTGVGLQILADCVRERTKCRARPFGFKSSLLHSLAQ
Nucleotide Sequence CTGGGGAACCTCTTTCCTCCTCTCACAGGAACAGGAGTGGGCCTTCAGATCCTGGCTGACTGTGTTAGGGAGAGGACAAAATGTAGAGCCAGACCATTTGGGTTCAAATCCTCGCTCCTCCACTCACTAGCACAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab