CircRNA Information

General Information
circRNA Basic Information
CircID chr17:39727901|39728185
Strand -
CircType exon
Host Gene ENSG00000141736.12;
Algorism CIRI2;
Sequence CCTCCTCCTGCCTTCAGCCCAGCCTTCGACAACCTCTATTACTGGGACCAGGACCCACCAGAGCGGGGGGCTCCACCCAGCACCTTCAAAGGGACACCTACGGCAGAGAACCCAGAGTACCTGGGTCTGGACGTGCCAGTGTGAACCAGAAGGCCAAGTCCGCAGAAGCCCTGATGTGTCCTCAGGGAGCAGGGAAGGCCTGACTTCTGCTGGCATCAAGAGGTGGGAGGGCCCTCCGACCACTTCCAGGGGAACCTGCCATGCCAGGAACCTGTCCTAAGGAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:39727901|39728185 hsa-miR-18a-5p 0 0 1
chr17:39727901|39728185 hsa-miR-18a-3p 0 0 1
chr17:39727901|39728185 hsa-miR-198 0 0 1
chr17:39727901|39728185 hsa-miR-204-5p 0 0 1
chr17:39727901|39728185 hsa-miR-204-3p 0 0 1
chr17:39727901|39728185 hsa-miR-211-5p 0 0 1
chr17:39727901|39728185 hsa-miR-211-3p 0 0 1
chr17:39727901|39728185 hsa-miR-377-5p 0 0 1
chr17:39727901|39728185 hsa-miR-377-3p 0 0 1
chr17:39727901|39728185 hsa-miR-326 0 0 1
chr17:39727901|39728185 hsa-miR-18b-5p 0 0 1
chr17:39727901|39728185 hsa-miR-18b-3p 0 0 1
chr17:39727901|39728185 hsa-miR-493-5p 0 0 1
chr17:39727901|39728185 hsa-miR-493-3p 0 0 1
chr17:39727901|39728185 hsa-miR-564 0 0 1
chr17:39727901|39728185 hsa-miR-657 0 1 1
chr17:39727901|39728185 hsa-miR-765 0 0 1
chr17:39727901|39728185 hsa-miR-298 0 1 1
chr17:39727901|39728185 hsa-miR-541-5p 0 0 1
chr17:39727901|39728185 hsa-miR-541-3p 0 0 1
chr17:39727901|39728185 hsa-miR-922 0 1 1
chr17:39727901|39728185 hsa-miR-940 0 0 1
chr17:39727901|39728185 hsa-miR-1237-5p 0 0 1
chr17:39727901|39728185 hsa-miR-1237-3p 0 0 1
chr17:39727901|39728185 hsa-miR-1202 0 1 1
chr17:39727901|39728185 hsa-miR-1293 0 0 1
chr17:39727901|39728185 hsa-miR-1197 0 1 1
chr17:39727901|39728185 hsa-miR-1225-3p 0 0 1
chr17:39727901|39728185 hsa-miR-1224-5p 0 1 1
chr17:39727901|39728185 hsa-miR-532-3p 0 0 1
chr17:39727901|39728185 hsa-miR-654-5p 0 0 1
chr17:39727901|39728185 hsa-miR-1224-3p 0 0 1
chr17:39727901|39728185 hsa-miR-331-3p 0 0 1
chr17:39727901|39728185 hsa-miR-1207-5p 0 0 1
chr17:39727901|39728185 hsa-miR-125a-5p 0 0 1
chr17:39727901|39728185 hsa-miR-330-5p 1 1 1
chr17:39727901|39728185 hsa-miR-1260 0 0 1
chr17:39727901|39728185 hsa-miR-1274a 0 0 1
chr17:39727901|39728185 hsa-miR-1280 0 0 1
chr17:39727901|39728185 hsa-miR-125b 0 0 1
chr17:39727901|39728185 hsa-miR-453 0 0 1
chr17:39727901|39728185 hsa-miR-611 0 1 0
chr17:39727901|39728185 hsa-miR-623 1 0 0
chr17:39727901|39728185 hsa-miR-663a 1 0 0
chr17:39727901|39728185 hsa-miR-762 1 0 0
chr17:39727901|39728185 hsa-miR-1183 1 0 0
chr17:39727901|39728185 hsa-miR-1260a 0 1 0
chr17:39727901|39728185 hsa-miR-3141 1 0 0
chr17:39727901|39728185 hsa-miR-3142 0 1 0
chr17:39727901|39728185 hsa-miR-3147 1 0 0
chr17:39727901|39728185 hsa-miR-320e 1 0 0
chr17:39727901|39728185 hsa-miR-4281 1 0 0
chr17:39727901|39728185 hsa-miR-4290 0 1 0
chr17:39727901|39728185 hsa-miR-3652 1 0 0
chr17:39727901|39728185 hsa-miR-3657 0 1 0
chr17:39727901|39728185 hsa-miR-378g 1 1 0
chr17:39727901|39728185 hsa-miR-4429 1 0 0
chr17:39727901|39728185 hsa-miR-4430 1 0 0
chr17:39727901|39728185 hsa-miR-4449 1 0 0
chr17:39727901|39728185 hsa-miR-4478 1 0 0
chr17:39727901|39728185 hsa-miR-4486 1 0 0
chr17:39727901|39728185 hsa-miR-4492 1 0 0
chr17:39727901|39728185 hsa-miR-4493 0 1 0
chr17:39727901|39728185 hsa-miR-4505 1 1 0
chr17:39727901|39728185 hsa-miR-1587 1 1 0
chr17:39727901|39728185 hsa-miR-4651 1 0 0
chr17:39727901|39728185 hsa-miR-4656 1 1 0
chr17:39727901|39728185 hsa-miR-4721 1 0 0
chr17:39727901|39728185 hsa-miR-4734 1 0 0
chr17:39727901|39728185 hsa-miR-4736 0 1 0
chr17:39727901|39728185 hsa-miR-4741 1 0 0
chr17:39727901|39728185 hsa-miR-4754 0 1 0
chr17:39727901|39728185 hsa-miR-5194 1 0 0
chr17:39727901|39728185 hsa-miR-5787 1 1 0
chr17:39727901|39728185 hsa-miR-6085 1 0 0
chr17:39727901|39728185 hsa-miR-6086 1 1 0
chr17:39727901|39728185 hsa-miR-6126 0 1 0
chr17:39727901|39728185 hsa-miR-6860 1 0 0
chr17:39727901|39728185 hsa-miR-8073 0 1 0
chr17:39727901|39728185 hsa-miR-8089 1 0 0
chr17:39727901|39728185 hsa-miR-1843 1 0 0
chr17:39727901|39728185 hsa-miR-12127 1 0 0
chr17:39727901|39728185 hsa-miR-4726-3p 0 1 0
chr17:39727901|39728185 hsa-miR-6894-5p 1 0 0
chr17:39727901|39728185 hsa-miR-4687-3p 1 0 0
chr17:39727901|39728185 hsa-miR-6804-5p 1 0 0
chr17:39727901|39728185 hsa-miR-6515-5p 1 0 0
chr17:39727901|39728185 hsa-miR-6089 1 0 0
chr17:39727901|39728185 hsa-miR-6757-5p 1 0 0
chr17:39727901|39728185 hsa-miR-296-5p 1 0 0
chr17:39727901|39728185 hsa-miR-6741-5p 1 0 0
chr17:39727901|39728185 hsa-miR-3622b-5p 0 1 0
chr17:39727901|39728185 hsa-miR-6721-5p 1 0 0
chr17:39727901|39728185 hsa-miR-23b-5p 0 1 0
chr17:39727901|39728185 hsa-miR-8069 1 0 0
chr17:39727901|39728185 hsa-miR-6748-5p 1 0 0
chr17:39727901|39728185 hsa-miR-6793-5p 1 1 0
chr17:39727901|39728185 hsa-miR-6732-5p 1 0 0
chr17:39727901|39728185 hsa-miR-23a-5p 0 1 0
chr17:39727901|39728185 hsa-miR-6782-5p 1 0 0
chr17:39727901|39728185 hsa-miR-6850-5p 1 0 0
chr17:39727901|39728185 hsa-miR-615-5p 1 0 0
chr17:39727901|39728185 hsa-miR-193b-5p 1 0 0
chr17:39727901|39728185 hsa-miR-6757-3p 0 1 0
chr17:39727901|39728185 hsa-miR-3127-5p 0 1 0
chr17:39727901|39728185 hsa-let-7b-5p 1 0 0
chr17:39727901|39728185 hsa-miR-877-5p 1 0 0
chr17:39727901|39728185 hsa-miR-4640-3p 1 0 0
chr17:39727901|39728185 hsa-miR-7152-3p 1 1 0
chr17:39727901|39728185 hsa-let-7c-5p 1 0 0
chr17:39727901|39728185 hsa-miR-1250-5p 1 1 0
chr17:39727901|39728185 hsa-miR-7106-3p 0 1 0
chr17:39727901|39728185 hsa-miR-597-3p 0 1 0
chr17:39727901|39728185 hsa-miR-502-5p 0 1 0
chr17:39727901|39728185 hsa-miR-6880-3p 0 1 0
chr17:39727901|39728185 hsa-miR-6734-3p 0 1 0
chr17:39727901|39728185 hsa-miR-4650-5p 0 1 0
chr17:39727901|39728185 hsa-miR-1233-5p 1 0 0
chr17:39727901|39728185 hsa-miR-6778-5p 1 0 0
chr17:39727901|39728185 hsa-miR-6893-5p 0 1 0
chr17:39727901|39728185 hsa-miR-5001-5p 1 1 0
chr17:39727901|39728185 hsa-miR-6752-5p 1 0 0
chr17:39727901|39728185 hsa-miR-6756-5p 1 0 0
chr17:39727901|39728185 hsa-miR-6851-5p 1 1 0
chr17:39727901|39728185 hsa-miR-6808-5p 1 1 0
chr17:39727901|39728185 hsa-miR-6879-5p 1 0 0
chr17:39727901|39728185 hsa-miR-3620-5p 1 1 0
chr17:39727901|39728185 hsa-miR-5189-5p 1 0 0
chr17:39727901|39728185 hsa-miR-10396a-5p 1 0 0
chr17:39727901|39728185 hsa-miR-10396b-5p 1 0 0
chr17:39727901|39728185 hsa-miR-4685-5p 1 0 0
chr17:39727901|39728185 hsa-miR-6848-5p 1 0 0
chr17:39727901|39728185 hsa-miR-6791-5p 1 0 0
chr17:39727901|39728185 hsa-miR-6718-5p 0 1 0
chr17:39727901|39728185 hsa-miR-320a-3p 1 0 0
chr17:39727901|39728185 hsa-miR-320b 1 0 0
chr17:39727901|39728185 hsa-miR-320c 1 0 0
chr17:39727901|39728185 hsa-miR-323b-5p 0 1 0
chr17:39727901|39728185 hsa-miR-320d 1 0 0
chr17:39727901|39728185 hsa-miR-6764-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:39727901|39728185
ORF Type ORF1
Protein Length 90
Nucleotide Length 273
Protein Sequence MPSAQPSTTSITGTRTHQSGGLHPAPSKGHLRQRTQSTWVWTCQCEPEGQVRRSPDVSSGSREGLTSAGIKRWEGPPTTSRGTCHARNLS
Nucleotide Sequence CTGCCTTCAGCCCAGCCTTCGACAACCTCTATTACTGGGACCAGGACCCACCAGAGCGGGGGGCTCCACCCAGCACCTTCAAAGGGACACCTACGGCAGAGAACCCAGAGTACCTGGGTCTGGACGTGCCAGTGTGAACCAGAAGGCCAAGTCCGCAGAAGCCCTGATGTGTCCTCAGGGAGCAGGGAAGGCCTGACTTCTGCTGGCATCAAGAGGTGGGAGGGCCCTCCGACCACTTCCAGGGGAACCTGCCATGCCAGGAACCTGTCCTAA
CircID chr17:39727901|39728185
ORF Type ORF2
Protein Length 53
Nucleotide Length 162
Protein Sequence MGPGPTRAGGSTQHLQRDTYGREPRVPGSGRASVNQKAKSAEALMCPQGAGKA
Nucleotide Sequence CTGGGACCAGGACCCACCAGAGCGGGGGGCTCCACCCAGCACCTTCAAAGGGACACCTACGGCAGAGAACCCAGAGTACCTGGGTCTGGACGTGCCAGTGTGAACCAGAAGGCCAAGTCCGCAGAAGCCCTGATGTGTCCTCAGGGAGCAGGGAAGGCCTGA
CircID chr17:39727901|39728185
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MLASRGGRALRPLPGEPAMPGTCPKE
Nucleotide Sequence CTGCTGGCATCAAGAGGTGGGAGGGCCCTCCGACCACTTCCAGGGGAACCTGCCATGCCAGGAACCTGTCCTAAGGAA
CircID chr17:39727901|39728185
ORF Type ORF4
Protein Length 89
Nucleotide Length 267
Protein Sequence MAWQVPLEVVGGPSHLLMPAEVRPSLLPEDTSGLLRTWPSGSHWHVQTQVLWVLCRRCPFEGAGWSPPLWWVLVPVIEVVEGWAEGRRR
Nucleotide Sequence CTGGCATGGCAGGTTCCCCTGGAAGTGGTCGGAGGGCCCTCCCACCTCTTGATGCCAGCAGAAGTCAGGCCTTCCCTGCTCCCTGAGGACACATCAGGGCTTCTGCGGACTTGGCCTTCTGGTTCACACTGGCACGTCCAGACCCAGGTACTCTGGGTTCTCTGCCGTAGGTGTCCCTTTGAAGGTGCTGGGTGGAGCCCCCCGCTCTGGTGGGTCCTGGTCCCAGTAATAGAGGTTGTCGAAGGCTGGGCTGAAGGCAGGAGGAGG
CircID chr17:39727901|39728185
ORF Type ORF5
Protein Length 48
Nucleotide Length 147
Protein Sequence MRTHQGFCGLGLLVHTGTSRPRYSGFSAVGVPLKVLGGAPRSGGSWSQ
Nucleotide Sequence CTGAGGACACATCAGGGCTTCTGCGGACTTGGCCTTCTGGTTCACACTGGCACGTCCAGACCCAGGTACTCTGGGTTCTCTGCCGTAGGTGTCCCTTTGAAGGTGCTGGGTGGAGCCCCCCGCTCTGGTGGGTCCTGGTCCCAGTAA
CircID chr17:39727901|39728185
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MAGSPGSGRRALPPLDASRSQAFPAP
Nucleotide Sequence ATGGCAGGTTCCCCTGGAAGTGGTCGGAGGGCCCTCCCACCTCTTGATGCCAGCAGAAGTCAGGCCTTCCCTGCTCCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab