CircRNA Information

General Information
circRNA Basic Information
CircID chr17:39729432|39729764
Strand +
CircType exon
Host Gene ENSG00000141741.10;
Algorism CIRI2;
Sequence CAGGTGCCTTTGAGATAGAGATAAATGGACAGCTGGTGTTCTCCAAGCTGGAGAATGGGGGCTTTCCCTATGAGAAAGATGTGAGTATTTACAGCGTTGGGAGGACCTCTTGGTCACCCTACCCCAACAGTGCATCATCCTGTCATTCCACTCCTCTAGCTCATTGAGGCCATCCGAAGAGCCAGTAATGGAGAAACCCTAGAAAAGATCACCAACAGCCGTCCTCCCTGCGTCATCCTGTGACTGCACAGGACTCTGGGTTCCTGCTCTGTTCTGGGGTCCAAACCTTGGTCTCCCTTTGGTCCTGCTGGGAGCTCCCCCTGCCTCTTTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:39729432|39729764 hsa-miR-214-5p 0 0 1
chr17:39729432|39729764 hsa-miR-214-3p 0 0 1
chr17:39729432|39729764 hsa-miR-136-5p 0 0 1
chr17:39729432|39729764 hsa-miR-136-3p 0 0 1
chr17:39729432|39729764 hsa-miR-149-5p 0 0 1
chr17:39729432|39729764 hsa-miR-149-3p 0 0 1
chr17:39729432|39729764 hsa-miR-150-5p 0 0 1
chr17:39729432|39729764 hsa-miR-150-3p 0 0 1
chr17:39729432|39729764 hsa-miR-206 0 0 1
chr17:39729432|39729764 hsa-miR-432-5p 0 0 1
chr17:39729432|39729764 hsa-miR-432-3p 0 0 1
chr17:39729432|39729764 hsa-miR-193b-5p 0 0 1
chr17:39729432|39729764 hsa-miR-193b-3p 0 0 1
chr17:39729432|39729764 hsa-miR-506-5p 0 0 1
chr17:39729432|39729764 hsa-miR-506-3p 0 0 1
chr17:39729432|39729764 hsa-miR-583 0 0 1
chr17:39729432|39729764 hsa-miR-610 0 0 1
chr17:39729432|39729764 hsa-miR-613 0 0 1
chr17:39729432|39729764 hsa-miR-620 0 0 1
chr17:39729432|39729764 hsa-miR-766-5p 0 0 1
chr17:39729432|39729764 hsa-miR-766-3p 0 0 1
chr17:39729432|39729764 hsa-miR-892b 0 1 1
chr17:39729432|39729764 hsa-miR-877-5p 0 0 1
chr17:39729432|39729764 hsa-miR-877-3p 0 0 1
chr17:39729432|39729764 hsa-miR-873-5p 0 0 1
chr17:39729432|39729764 hsa-miR-873-3p 0 0 1
chr17:39729432|39729764 hsa-miR-760 0 0 1
chr17:39729432|39729764 hsa-miR-920 0 0 1
chr17:39729432|39729764 hsa-miR-939-5p 0 0 1
chr17:39729432|39729764 hsa-miR-939-3p 0 0 1
chr17:39729432|39729764 hsa-miR-940 1 0 1
chr17:39729432|39729764 hsa-miR-1226-5p 0 0 1
chr17:39729432|39729764 hsa-miR-1226-3p 0 0 1
chr17:39729432|39729764 hsa-miR-1208 0 0 1
chr17:39729432|39729764 hsa-miR-1286 1 1 1
chr17:39729432|39729764 hsa-miR-1270 0 0 1
chr17:39729432|39729764 hsa-miR-1321 0 0 1
chr17:39729432|39729764 hsa-miR-1322 0 1 1
chr17:39729432|39729764 hsa-miR-1827 0 0 1
chr17:39729432|39729764 hsa-miR-296-3p 0 0 1
chr17:39729432|39729764 hsa-miR-513a-5p 0 1 1
chr17:39729432|39729764 hsa-miR-556-5p 0 0 1
chr17:39729432|39729764 hsa-miR-885-5p 0 0 1
chr17:39729432|39729764 hsa-miR-1207-5p 1 1 1
chr17:39729432|39729764 hsa-miR-193a-3p 0 0 1
chr17:39729432|39729764 hsa-miR-515-5p 0 0 1
chr17:39729432|39729764 hsa-miR-371-5p 0 0 1
chr17:39729432|39729764 hsa-miR-220c 0 0 1
chr17:39729432|39729764 hsa-miR-124 0 0 1
chr17:39729432|39729764 hsa-miR-1 0 0 1
chr17:39729432|39729764 hsa-miR-588 1 1 0
chr17:39729432|39729764 hsa-miR-608 1 0 0
chr17:39729432|39729764 hsa-miR-650 1 0 0
chr17:39729432|39729764 hsa-miR-663a 1 0 0
chr17:39729432|39729764 hsa-miR-658 1 0 0
chr17:39729432|39729764 hsa-miR-762 1 0 0
chr17:39729432|39729764 hsa-miR-761 0 1 0
chr17:39729432|39729764 hsa-miR-3132 1 0 0
chr17:39729432|39729764 hsa-miR-3153 0 1 0
chr17:39729432|39729764 hsa-miR-4284 1 0 0
chr17:39729432|39729764 hsa-miR-3918 1 0 0
chr17:39729432|39729764 hsa-miR-3943 0 1 0
chr17:39729432|39729764 hsa-miR-4441 0 1 0
chr17:39729432|39729764 hsa-miR-3135b 1 1 0
chr17:39729432|39729764 hsa-miR-4464 0 1 0
chr17:39729432|39729764 hsa-miR-4510 0 1 0
chr17:39729432|39729764 hsa-miR-4523 0 1 0
chr17:39729432|39729764 hsa-miR-4530 1 1 0
chr17:39729432|39729764 hsa-miR-4533 1 0 0
chr17:39729432|39729764 hsa-miR-4538 0 1 0
chr17:39729432|39729764 hsa-miR-4688 1 0 0
chr17:39729432|39729764 hsa-miR-4706 1 0 0
chr17:39729432|39729764 hsa-miR-4739 1 1 0
chr17:39729432|39729764 hsa-miR-5194 1 0 0
chr17:39729432|39729764 hsa-miR-6085 1 0 0
chr17:39729432|39729764 hsa-miR-6124 1 0 0
chr17:39729432|39729764 hsa-miR-6133 1 1 0
chr17:39729432|39729764 hsa-miR-6165 0 1 0
chr17:39729432|39729764 hsa-miR-7150 1 0 0
chr17:39729432|39729764 hsa-miR-7974 1 0 0
chr17:39729432|39729764 hsa-miR-11400 1 0 0
chr17:39729432|39729764 hsa-miR-12120 0 1 0
chr17:39729432|39729764 hsa-miR-12122 0 1 0
chr17:39729432|39729764 hsa-miR-4433b-3p 1 1 0
chr17:39729432|39729764 hsa-miR-504-3p 1 0 0
chr17:39729432|39729764 hsa-miR-4433a-3p 1 0 0
chr17:39729432|39729764 hsa-miR-6765-5p 1 0 0
chr17:39729432|39729764 hsa-miR-7106-5p 1 1 0
chr17:39729432|39729764 hsa-miR-6894-5p 1 0 0
chr17:39729432|39729764 hsa-miR-4687-3p 1 1 0
chr17:39729432|39729764 hsa-miR-6728-5p 1 0 0
chr17:39729432|39729764 hsa-miR-1236-5p 1 0 0
chr17:39729432|39729764 hsa-miR-4786-5p 0 1 0
chr17:39729432|39729764 hsa-miR-6089 1 0 0
chr17:39729432|39729764 hsa-miR-6757-5p 1 0 0
chr17:39729432|39729764 hsa-miR-4695-5p 1 1 0
chr17:39729432|39729764 hsa-miR-6744-5p 0 1 0
chr17:39729432|39729764 hsa-miR-7154-3p 0 1 0
chr17:39729432|39729764 hsa-miR-6721-5p 1 1 0
chr17:39729432|39729764 hsa-miR-197-5p 1 0 0
chr17:39729432|39729764 hsa-miR-6798-5p 1 1 0
chr17:39729432|39729764 hsa-miR-486-3p 1 0 0
chr17:39729432|39729764 hsa-miR-6782-5p 1 0 0
chr17:39729432|39729764 hsa-miR-6753-5p 1 0 0
chr17:39729432|39729764 hsa-miR-1908-5p 1 0 0
chr17:39729432|39729764 hsa-miR-6824-5p 1 0 0
chr17:39729432|39729764 hsa-miR-4773 0 1 0
chr17:39729432|39729764 hsa-miR-6838-3p 0 1 0
chr17:39729432|39729764 hsa-miR-589-3p 0 1 0
chr17:39729432|39729764 hsa-miR-1251-5p 1 0 0
chr17:39729432|39729764 hsa-miR-10400-5p 1 0 0
chr17:39729432|39729764 hsa-miR-4763-3p 1 1 0
chr17:39729432|39729764 hsa-miR-6778-5p 1 0 0
chr17:39729432|39729764 hsa-miR-6787-5p 1 0 0
chr17:39729432|39729764 hsa-miR-1343-5p 1 1 0
chr17:39729432|39729764 hsa-miR-6743-5p 1 0 0
chr17:39729432|39729764 hsa-miR-6754-5p 1 1 0
chr17:39729432|39729764 hsa-miR-6819-5p 1 1 0
chr17:39729432|39729764 hsa-miR-6722-3p 1 0 0
chr17:39729432|39729764 hsa-miR-6763-5p 1 0 0
chr17:39729432|39729764 hsa-miR-6808-5p 1 1 0
chr17:39729432|39729764 hsa-miR-6879-5p 1 0 0
chr17:39729432|39729764 hsa-miR-7111-5p 1 0 0
chr17:39729432|39729764 hsa-miR-6836-5p 1 0 0
chr17:39729432|39729764 hsa-miR-1909-3p 0 1 0
chr17:39729432|39729764 hsa-miR-328-5p 1 0 0
chr17:39729432|39729764 hsa-miR-4726-5p 1 0 0
chr17:39729432|39729764 hsa-miR-6738-5p 1 0 0
chr17:39729432|39729764 hsa-miR-6777-5p 1 0 0
chr17:39729432|39729764 hsa-miR-6794-5p 1 1 0
chr17:39729432|39729764 hsa-miR-6795-5p 1 0 0
chr17:39729432|39729764 hsa-miR-6858-5p 0 1 0
chr17:39729432|39729764 hsa-miR-6889-5p 1 0 0
chr17:39729432|39729764 hsa-miR-4723-5p 0 1 0
chr17:39729432|39729764 hsa-miR-6885-5p 0 1 0
chr17:39729432|39729764 hsa-miR-6739-5p 0 1 0
chr17:39729432|39729764 hsa-miR-6773-5p 0 1 0
chr17:39729432|39729764 hsa-miR-6785-5p 1 0 0
chr17:39729432|39729764 hsa-miR-6876-3p 1 1 0
chr17:39729432|39729764 hsa-miR-6814-3p 0 1 0
chr17:39729432|39729764 hsa-miR-1912-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:39729432|39729764
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MHRTLGSCSVLGSKPWSPFGPAGSSPCLFP
Nucleotide Sequence CTGCACAGGACTCTGGGTTCCTGCTCTGTTCTGGGGTCCAAACCTTGGTCTCCCTTTGGTCCTGCTGGGAGCTCCCCCTGCCTCTTTCCC
CircID chr17:39729432|39729764
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MVTLPQQCIILSFHSSSSLRPSEEPVMEKP
Nucleotide Sequence TTGGTCACCCTACCCCAACAGTGCATCATCCTGTCATTCCACTCCTCTAGCTCATTGAGGCCATCCGAAGAGCCAGTAATGGAGAAACCCTAG
CircID chr17:39729432|39729764
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MVFSKLENGGFPYEKDVSIYSVGRTSWSPYPNSASSCHSTPLAH
Nucleotide Sequence CTGGTGTTCTCCAAGCTGGAGAATGGGGGCTTTCCCTATGAGAAAGATGTGAGTATTTACAGCGTTGGGAGGACCTCTTGGTCACCCTACCCCAACAGTGCATCATCCTGTCATTCCACTCCTCTAGCTCATTGA
CircID chr17:39729432|39729764
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MRHPVTAQDSGFLLCSGVQTLVSLWSCWELPLPLS
Nucleotide Sequence CTGCGTCATCCTGTGACTGCACAGGACTCTGGGTTCCTGCTCTGTTCTGGGGTCCAAACCTTGGTCTCCCTTTGGTCCTGCTGGGAGCTCCCCCTGCCTCTTTCC
CircID chr17:39729432|39729764
ORF Type ORF5
Protein Length 46
Nucleotide Length 138
Protein Sequence MMHCWGRVTKRSSQRCKYSHLSHRESPHSPAWRTPAVHLSLSQRHL
Nucleotide Sequence ATGATGCACTGTTGGGGTAGGGTGACCAAGAGGTCCTCCCAACGCTGTAAATACTCACATCTTTCTCATAGGGAAAGCCCCCATTCTCCAGCTTGGAGAACACCAGCTGTCCATTTATCTCTATCTCAAAGGCACCTG
CircID chr17:39729432|39729764
ORF Type ORF6
Protein Length 42
Nucleotide Length 129
Protein Sequence MDPRTEQEPRVLCSHRMTQGGRLLVIFSRVSPLLALRMASMS
Nucleotide Sequence TTGGACCCCAGAACAGAGCAGGAACCCAGAGTCCTGTGCAGTCACAGGATGACGCAGGGAGGACGGCTGTTGGTGATCTTTTCTAGGGTTTCTCCATTACTGGCTCTTCGGATGGCCTCAATGAGCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab