CircRNA Information

General Information
circRNA Basic Information
CircID chr17:39744565|39744926
Strand -
CircType exon
Host Gene ENSG00000141738.12;
Algorism CIRI2;
Sequence CTGCAGTACGTGGCAGATGTGAACGAGTCCAACGTGTACGTGGTGACGCAGGGCCGCAAGCTCTACGGGATGCCCACTGACTTCGGTTTCTGTGTCAAGGTGAAGACCTGGCCAGGCCTGGCCCCTGGCCTGGGGAAGCAGGAACTGCTCAGGCCCCTGGATCCTGCCCGGGGCTTCTGAGCCCCAATTCAGACACCTAGACTCCTCTCCCTGCACCCTGGCCTGCTGGAAACTCCTGGATTCAGCTCTGCTATGTGGAGCAGGGGCAGACATGTGGTCCTAAAGGCAGATATGGGACCAGTCAATTTCCTCTCTCTGCAGCCCAACAAGCTTCGAAATGGCCACAAGGGGCTTCGGATCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:39744565|39744926 hsa-miR-23a-5p 0 0 1
chr17:39744565|39744926 hsa-miR-23a-3p 0 0 1
chr17:39744565|39744926 hsa-miR-197-5p 0 0 1
chr17:39744565|39744926 hsa-miR-197-3p 0 0 1
chr17:39744565|39744926 hsa-miR-214-5p 0 0 1
chr17:39744565|39744926 hsa-miR-214-3p 0 0 1
chr17:39744565|39744926 hsa-miR-217-5p 0 0 1
chr17:39744565|39744926 hsa-miR-217-3p 0 0 1
chr17:39744565|39744926 hsa-miR-23b-5p 0 0 1
chr17:39744565|39744926 hsa-miR-23b-3p 0 0 1
chr17:39744565|39744926 hsa-miR-370-5p 0 0 1
chr17:39744565|39744926 hsa-miR-370-3p 0 0 1
chr17:39744565|39744926 hsa-miR-346 1 1 1
chr17:39744565|39744926 hsa-miR-412-5p 0 0 1
chr17:39744565|39744926 hsa-miR-412-3p 0 0 1
chr17:39744565|39744926 hsa-miR-632 0 1 1
chr17:39744565|39744926 hsa-miR-651-5p 0 0 1
chr17:39744565|39744926 hsa-miR-651-3p 0 0 1
chr17:39744565|39744926 hsa-miR-665 0 0 1
chr17:39744565|39744926 hsa-miR-943 0 0 1
chr17:39744565|39744926 hsa-miR-663b 0 0 1
chr17:39744565|39744926 hsa-miR-1291 0 1 1
chr17:39744565|39744926 hsa-miR-324-5p 0 1 1
chr17:39744565|39744926 hsa-miR-654-3p 0 0 1
chr17:39744565|39744926 hsa-miR-338-3p 0 0 1
chr17:39744565|39744926 hsa-miR-324-3p 0 0 1
chr17:39744565|39744926 hsa-miR-509-3-5p 0 0 1
chr17:39744565|39744926 hsa-miR-509-5p 0 0 1
chr17:39744565|39744926 hsa-miR-516a-3p 0 0 1
chr17:39744565|39744926 hsa-miR-220b 0 0 1
chr17:39744565|39744926 hsa-miR-1269 0 0 1
chr17:39744565|39744926 hsa-miR-219-2-3p 0 0 1
chr17:39744565|39744926 hsa-miR-514 0 0 1
chr17:39744565|39744926 hsa-miR-24 0 0 1
chr17:39744565|39744926 hsa-miR-612 1 0 0
chr17:39744565|39744926 hsa-miR-762 1 0 0
chr17:39744565|39744926 hsa-miR-1913 0 1 0
chr17:39744565|39744926 hsa-miR-2861 0 1 0
chr17:39744565|39744926 hsa-miR-2909 0 1 0
chr17:39744565|39744926 hsa-miR-3132 1 0 0
chr17:39744565|39744926 hsa-miR-3147 1 1 0
chr17:39744565|39744926 hsa-miR-4260 0 1 0
chr17:39744565|39744926 hsa-miR-4270 1 0 0
chr17:39744565|39744926 hsa-miR-3916 1 1 0
chr17:39744565|39744926 hsa-miR-4441 0 1 0
chr17:39744565|39744926 hsa-miR-4488 1 0 0
chr17:39744565|39744926 hsa-miR-4510 0 1 0
chr17:39744565|39744926 hsa-miR-4527 1 0 0
chr17:39744565|39744926 hsa-miR-4530 1 1 0
chr17:39744565|39744926 hsa-miR-4644 0 1 0
chr17:39744565|39744926 hsa-miR-4656 1 0 0
chr17:39744565|39744926 hsa-miR-4688 1 0 0
chr17:39744565|39744926 hsa-miR-4706 1 0 0
chr17:39744565|39744926 hsa-miR-4734 1 0 0
chr17:39744565|39744926 hsa-miR-4739 1 0 0
chr17:39744565|39744926 hsa-miR-4741 1 0 0
chr17:39744565|39744926 hsa-miR-5090 1 0 0
chr17:39744565|39744926 hsa-miR-5572 1 1 0
chr17:39744565|39744926 hsa-miR-6133 1 1 0
chr17:39744565|39744926 hsa-miR-8085 0 1 0
chr17:39744565|39744926 hsa-miR-12121 0 1 0
chr17:39744565|39744926 hsa-miR-4435 0 1 0
chr17:39744565|39744926 hsa-miR-6734-5p 1 0 0
chr17:39744565|39744926 hsa-miR-671-5p 1 1 0
chr17:39744565|39744926 hsa-miR-7106-5p 1 0 0
chr17:39744565|39744926 hsa-miR-1972 1 1 0
chr17:39744565|39744926 hsa-miR-210-5p 0 1 0
chr17:39744565|39744926 hsa-miR-6799-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6510-5p 1 0 0
chr17:39744565|39744926 hsa-miR-766-5p 0 1 0
chr17:39744565|39744926 hsa-miR-6089 1 0 0
chr17:39744565|39744926 hsa-miR-6757-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6880-5p 1 0 0
chr17:39744565|39744926 hsa-miR-4653-3p 1 0 0
chr17:39744565|39744926 hsa-miR-4722-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6842-3p 1 0 0
chr17:39744565|39744926 hsa-miR-3187-3p 1 0 0
chr17:39744565|39744926 hsa-miR-6776-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6768-5p 1 0 0
chr17:39744565|39744926 hsa-miR-3180-3p 1 0 0
chr17:39744565|39744926 hsa-miR-6772-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6829-5p 1 1 0
chr17:39744565|39744926 hsa-miR-6798-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6760-5p 1 1 0
chr17:39744565|39744926 hsa-miR-5006-5p 1 0 0
chr17:39744565|39744926 hsa-miR-4793-5p 0 1 0
chr17:39744565|39744926 hsa-miR-4640-5p 1 1 0
chr17:39744565|39744926 hsa-miR-5001-3p 0 1 0
chr17:39744565|39744926 hsa-miR-4690-5p 0 1 0
chr17:39744565|39744926 hsa-miR-92b-5p 1 0 0
chr17:39744565|39744926 hsa-miR-877-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6749-5p 1 0 0
chr17:39744565|39744926 hsa-miR-3160-3p 0 1 0
chr17:39744565|39744926 hsa-miR-149-3p 1 0 0
chr17:39744565|39744926 hsa-miR-6824-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6789-5p 1 0 0
chr17:39744565|39744926 hsa-miR-3162-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6802-5p 1 0 0
chr17:39744565|39744926 hsa-miR-3158-5p 0 1 0
chr17:39744565|39744926 hsa-miR-6878-5p 1 0 0
chr17:39744565|39744926 hsa-miR-194-3p 0 1 0
chr17:39744565|39744926 hsa-miR-7112-5p 0 1 0
chr17:39744565|39744926 hsa-miR-3190-5p 0 1 0
chr17:39744565|39744926 hsa-miR-3120-5p 0 1 0
chr17:39744565|39744926 hsa-miR-584-3p 0 1 0
chr17:39744565|39744926 hsa-miR-4661-3p 0 1 0
chr17:39744565|39744926 hsa-miR-3074-5p 0 1 0
chr17:39744565|39744926 hsa-miR-4283 0 1 0
chr17:39744565|39744926 hsa-miR-5587-3p 0 1 0
chr17:39744565|39744926 hsa-miR-6780b-3p 0 1 0
chr17:39744565|39744926 hsa-miR-455-5p 0 1 0
chr17:39744565|39744926 hsa-miR-337-3p 0 1 0
chr17:39744565|39744926 hsa-miR-1207-5p 1 0 0
chr17:39744565|39744926 hsa-miR-4763-3p 1 1 0
chr17:39744565|39744926 hsa-miR-6778-5p 1 0 0
chr17:39744565|39744926 hsa-miR-1343-5p 1 0 0
chr17:39744565|39744926 hsa-miR-5001-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6743-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6754-5p 1 1 0
chr17:39744565|39744926 hsa-miR-6756-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6813-5p 0 1 0
chr17:39744565|39744926 hsa-miR-6842-5p 1 0 0
chr17:39744565|39744926 hsa-miR-1249-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6722-3p 1 1 0
chr17:39744565|39744926 hsa-miR-6763-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6779-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6797-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6879-5p 1 0 0
chr17:39744565|39744926 hsa-miR-7111-5p 1 0 0
chr17:39744565|39744926 hsa-miR-3620-5p 1 0 0
chr17:39744565|39744926 hsa-miR-4728-5p 1 0 0
chr17:39744565|39744926 hsa-miR-1237-5p 1 0 0
chr17:39744565|39744926 hsa-miR-1909-3p 1 0 0
chr17:39744565|39744926 hsa-miR-328-5p 1 0 0
chr17:39744565|39744926 hsa-miR-4649-5p 1 0 0
chr17:39744565|39744926 hsa-miR-4685-5p 1 0 0
chr17:39744565|39744926 hsa-miR-4725-3p 1 0 0
chr17:39744565|39744926 hsa-miR-4726-5p 1 1 0
chr17:39744565|39744926 hsa-miR-4745-5p 1 0 0
chr17:39744565|39744926 hsa-miR-4749-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6729-5p 1 0 0
chr17:39744565|39744926 hsa-miR-675-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6777-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6848-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6889-5p 1 0 0
chr17:39744565|39744926 hsa-miR-939-5p 1 0 0
chr17:39744565|39744926 hsa-miR-4758-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6511b-5p 1 0 0
chr17:39744565|39744926 hsa-miR-10396a-3p 0 1 0
chr17:39744565|39744926 hsa-miR-10396b-3p 0 1 0
chr17:39744565|39744926 hsa-miR-30c-1-3p 1 0 0
chr17:39744565|39744926 hsa-miR-6731-5p 0 1 0
chr17:39744565|39744926 hsa-miR-6758-5p 0 1 0
chr17:39744565|39744926 hsa-miR-6856-5p 1 1 0
chr17:39744565|39744926 hsa-miR-1914-3p 1 0 0
chr17:39744565|39744926 hsa-miR-6762-5p 1 0 0
chr17:39744565|39744926 hsa-miR-5009-5p 0 1 0
chr17:39744565|39744926 hsa-miR-6810-3p 0 1 0
chr17:39744565|39744926 hsa-miR-6837-5p 1 0 0
chr17:39744565|39744926 hsa-miR-6859-5p 1 1 0
chr17:39744565|39744926 hsa-miR-3619-5p 1 1 0
chr17:39744565|39744926 hsa-miR-10397-5p 0 1 0
chr17:39744565|39744926 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:39744565|39744926
ORF Type ORF1
Protein Length 59
Nucleotide Length 180
Protein Sequence LQYVADVNESNVYVVTQGRKLYGMPTDFGFCVKVKTWPGLAPGLGKQELLRPLDPARGF
Nucleotide Sequence CTGCAGTACGTGGCAGATGTGAACGAGTCCAACGTGTACGTGGTGACGCAGGGCCGCAAGCTCTACGGGATGCCCACTGACTTCGGTTTCTGTGTCAAGGTGAAGACCTGGCCAGGCCTGGCCCCTGGCCTGGGGAAGCAGGAACTGCTCAGGCCCCTGGATCCTGCCCGGGGCTTCTGA
CircID chr17:39744565|39744926
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MHPGLLETPGFSSAMWSRGRHVVLKADMGPVNFLSLQPNKLRNGHKGLRI
Nucleotide Sequence CTGCACCCTGGCCTGCTGGAAACTCCTGGATTCAGCTCTGCTATGTGGAGCAGGGGCAGACATGTGGTCCTAAAGGCAGATATGGGACCAGTCAATTTCCTCTCTCTGCAGCCCAACAAGCTTCGAAATGGCCACAAGGGGCTTCGGATC
CircID chr17:39744565|39744926
ORF Type ORF3
Protein Length 52
Nucleotide Length 159
Protein Sequence MAWGSRNCSGPWILPGASEPQFRHLDSSPCTLACWKLLDSALLCGAGADMWS
Nucleotide Sequence CTGGCCTGGGGAAGCAGGAACTGCTCAGGCCCCTGGATCCTGCCCGGGGCTTCTGAGCCCCAATTCAGACACCTAGACTCCTCTCCCTGCACCCTGGCCTGCTGGAAACTCCTGGATTCAGCTCTGCTATGTGGAGCAGGGGCAGACATGTGGTCCTAA
CircID chr17:39744565|39744926
ORF Type ORF4
Protein Length 36
Nucleotide Length 111
Protein Sequence MCQGEDLARPGPWPGEAGTAQAPGSCPGLLSPNSDT
Nucleotide Sequence CTGTGTCAAGGTGAAGACCTGGCCAGGCCTGGCCCCTGGCCTGGGGAAGCAGGAACTGCTCAGGCCCCTGGATCCTGCCCGGGGCTTCTGAGCCCCAATTCAGACACCTAG
CircID chr17:39744565|39744926
ORF Type ORF5
Protein Length 52
Nucleotide Length 159
Protein Sequence MWPFRSLLGCRERKLTGPISAFRTTCLPLLHIAELNPGVSSRPGCRERSLGV
Nucleotide Sequence TTGTGGCCATTTCGAAGCTTGTTGGGCTGCAGAGAGAGGAAATTGACTGGTCCCATATCTGCCTTTAGGACCACATGTCTGCCCCTGCTCCACATAGCAGAGCTGAATCCAGGAGTTTCCAGCAGGCCAGGGTGCAGGGAGAGGAGTCTAGGTGTCTGA
CircID chr17:39744565|39744926
ORF Type ORF6
Protein Length 29
Nucleotide Length 90
Protein Sequence MSSSCFPRPGARPGQVFTLTQKPKSVGIP
Nucleotide Sequence CTGAGCAGTTCCTGCTTCCCCAGGCCAGGGGCCAGGCCTGGCCAGGTCTTCACCTTGACACAGAAACCGAAGTCAGTGGGCATCCCGTAG
CircID chr17:39744565|39744926
ORF Type ORF7
Protein Length 91
Nucleotide Length 273
Protein Sequence MSAPAPHSRAESRSFQQARVQGEESRCLNWGSEAPGRIQGPEQFLLPQARGQAWPGLHLDTETEVSGHPVELAALRHHVHVGLVHICHVLQ
Nucleotide Sequence ATGTCTGCCCCTGCTCCACATAGCAGAGCTGAATCCAGGAGTTTCCAGCAGGCCAGGGTGCAGGGAGAGGAGTCTAGGTGTCTGAATTGGGGCTCAGAAGCCCCGGGCAGGATCCAGGGGCCTGAGCAGTTCCTGCTTCCCCAGGCCAGGGGCCAGGCCTGGCCAGGTCTTCACCTTGACACAGAAACCGAAGTCAGTGGGCATCCCGTAGAGCTTGCGGCCCTGCGTCACCACGTACACGTTGGACTCGTTCACATCTGCCACGTACTGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab