CircRNA Information

General Information
circRNA Basic Information
CircID chr17:4014101|4014417
Strand -
CircType exon
Host Gene ENSG00000074755.13;
Algorism CIRI2;
Sequence CGCCCCAGGTGTCCGGCCGTCACGGTGAATCTGTAGCCCCACTCGGTGTTGCTCATGTCGGAGGTGAAGCGGTAATACAGAGTGTCTCCTAGGCACACAAGGATCAGAGGCCCATCAGGAACTGAAGCAACAGGGAATGGCAGCAGTGGTGTTGGGTTTCAACATTCTCCAGTAAGTTCCCTTCTCAATATTAAGTTTAAACACTGCCTGTGAAGAACCTATCTAATCGAGTATTTGTTTCACTACCTGGAAGTTCAAAATCTTTCCACTTCTGCTGAGACCCGCTGAAGCTGTGTCGGTCTTGCTGGAAGTCACTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:4014101|4014417 hsa-miR-27a-5p 0 0 1
chr17:4014101|4014417 hsa-miR-27a-3p 0 0 1
chr17:4014101|4014417 hsa-miR-34a-5p 0 0 1
chr17:4014101|4014417 hsa-miR-34a-3p 0 0 1
chr17:4014101|4014417 hsa-miR-214-5p 0 0 1
chr17:4014101|4014417 hsa-miR-214-3p 0 0 1
chr17:4014101|4014417 hsa-miR-27b-5p 0 0 1
chr17:4014101|4014417 hsa-miR-27b-3p 0 0 1
chr17:4014101|4014417 hsa-miR-196b-5p 0 0 1
chr17:4014101|4014417 hsa-miR-196b-3p 0 0 1
chr17:4014101|4014417 hsa-miR-449a 0 0 1
chr17:4014101|4014417 hsa-miR-412-5p 0 0 1
chr17:4014101|4014417 hsa-miR-412-3p 0 0 1
chr17:4014101|4014417 hsa-miR-494-5p 0 0 1
chr17:4014101|4014417 hsa-miR-494-3p 0 0 1
chr17:4014101|4014417 hsa-miR-580-5p 0 0 1
chr17:4014101|4014417 hsa-miR-580-3p 0 0 1
chr17:4014101|4014417 hsa-miR-581 0 0 1
chr17:4014101|4014417 hsa-miR-617 0 0 1
chr17:4014101|4014417 hsa-miR-449b-5p 0 0 1
chr17:4014101|4014417 hsa-miR-449b-3p 0 0 1
chr17:4014101|4014417 hsa-miR-653-5p 0 0 1
chr17:4014101|4014417 hsa-miR-653-3p 0 0 1
chr17:4014101|4014417 hsa-miR-298 0 1 1
chr17:4014101|4014417 hsa-miR-889-5p 0 0 1
chr17:4014101|4014417 hsa-miR-889-3p 0 0 1
chr17:4014101|4014417 hsa-miR-922 0 0 1
chr17:4014101|4014417 hsa-miR-1200 0 0 1
chr17:4014101|4014417 hsa-miR-1243 0 0 1
chr17:4014101|4014417 hsa-miR-1253 0 0 1
chr17:4014101|4014417 hsa-miR-339-5p 0 0 1
chr17:4014101|4014417 hsa-miR-513a-5p 0 1 1
chr17:4014101|4014417 hsa-miR-409-3p 0 0 1
chr17:4014101|4014417 hsa-miR-338-3p 0 0 1
chr17:4014101|4014417 hsa-miR-362-5p 0 1 1
chr17:4014101|4014417 hsa-miR-34c-5p 0 1 1
chr17:4014101|4014417 hsa-miR-556-3p 0 0 1
chr17:4014101|4014417 hsa-miR-1274a 0 0 1
chr17:4014101|4014417 hsa-miR-550 0 0 1
chr17:4014101|4014417 hsa-miR-1274b 0 0 1
chr17:4014101|4014417 hsa-miR-220c 0 0 1
chr17:4014101|4014417 hsa-miR-1300 0 0 1
chr17:4014101|4014417 hsa-miR-196a 0 0 1
chr17:4014101|4014417 hsa-miR-147 0 0 1
chr17:4014101|4014417 hsa-miR-923 0 0 1
chr17:4014101|4014417 hsa-miR-661 1 0 0
chr17:4014101|4014417 hsa-miR-663a 1 0 0
chr17:4014101|4014417 hsa-miR-3135a 0 1 0
chr17:4014101|4014417 hsa-miR-3154 0 1 0
chr17:4014101|4014417 hsa-miR-3164 0 1 0
chr17:4014101|4014417 hsa-miR-4471 0 1 0
chr17:4014101|4014417 hsa-miR-4489 1 1 0
chr17:4014101|4014417 hsa-miR-4512 1 0 0
chr17:4014101|4014417 hsa-miR-3960 1 0 0
chr17:4014101|4014417 hsa-miR-3978 0 1 0
chr17:4014101|4014417 hsa-miR-4651 1 0 0
chr17:4014101|4014417 hsa-miR-4673 1 0 0
chr17:4014101|4014417 hsa-miR-4692 0 1 0
chr17:4014101|4014417 hsa-miR-4696 0 1 0
chr17:4014101|4014417 hsa-miR-5190 0 1 0
chr17:4014101|4014417 hsa-miR-7515 0 1 0
chr17:4014101|4014417 hsa-miR-22-5p 0 1 0
chr17:4014101|4014417 hsa-miR-6765-5p 1 0 0
chr17:4014101|4014417 hsa-miR-3663-3p 1 0 0
chr17:4014101|4014417 hsa-miR-6721-5p 1 0 0
chr17:4014101|4014417 hsa-miR-197-5p 1 0 0
chr17:4014101|4014417 hsa-miR-3151-5p 0 1 0
chr17:4014101|4014417 hsa-miR-1292-5p 1 0 0
chr17:4014101|4014417 hsa-miR-6770-5p 0 1 0
chr17:4014101|4014417 hsa-miR-6882-3p 1 0 0
chr17:4014101|4014417 hsa-miR-6786-5p 1 0 0
chr17:4014101|4014417 hsa-miR-3162-5p 1 0 0
chr17:4014101|4014417 hsa-miR-550b-2-5p 0 1 0
chr17:4014101|4014417 hsa-miR-4781-3p 0 1 0
chr17:4014101|4014417 hsa-miR-194-3p 1 0 0
chr17:4014101|4014417 hsa-miR-3191-3p 1 0 0
chr17:4014101|4014417 hsa-miR-654-5p 1 0 0
chr17:4014101|4014417 hsa-miR-4742-3p 1 1 0
chr17:4014101|4014417 hsa-miR-4742-5p 1 0 0
chr17:4014101|4014417 hsa-miR-1296-3p 0 1 0
chr17:4014101|4014417 hsa-miR-3664-5p 1 0 0
chr17:4014101|4014417 hsa-miR-199b-5p 0 1 0
chr17:4014101|4014417 hsa-miR-548ao-3p 0 1 0
chr17:4014101|4014417 hsa-miR-6752-5p 1 0 0
chr17:4014101|4014417 hsa-miR-6756-5p 1 1 0
chr17:4014101|4014417 hsa-miR-5196-5p 1 0 0
chr17:4014101|4014417 hsa-miR-10396a-5p 1 0 0
chr17:4014101|4014417 hsa-miR-10396b-5p 1 0 0
chr17:4014101|4014417 hsa-miR-449c-5p 0 1 0
chr17:4014101|4014417 hsa-miR-4745-5p 1 1 0
chr17:4014101|4014417 hsa-miR-6858-5p 1 0 0
chr17:4014101|4014417 hsa-miR-6831-5p 1 0 0
chr17:4014101|4014417 hsa-miR-4758-5p 1 0 0
chr17:4014101|4014417 hsa-miR-34b-5p 0 1 0
chr17:4014101|4014417 hsa-miR-6511a-5p 1 0 0
chr17:4014101|4014417 hsa-miR-3085-5p 1 0 0
chr17:4014101|4014417 hsa-miR-6758-5p 1 0 0
chr17:4014101|4014417 hsa-miR-324-3p 0 1 0
chr17:4014101|4014417 hsa-miR-4646-5p 1 0 0
chr17:4014101|4014417 hsa-miR-6750-5p 1 1 0
chr17:4014101|4014417 hsa-miR-6822-5p 0 1 0
chr17:4014101|4014417 hsa-miR-6893-3p 1 0 0
chr17:4014101|4014417 hsa-miR-500b-5p 0 1 0
chr17:4014101|4014417 hsa-miR-330-5p 1 0 0
chr17:4014101|4014417 hsa-miR-6744-3p 0 1 0
chr17:4014101|4014417 hsa-miR-4769-3p 0 1 0
chr17:4014101|4014417 hsa-miR-122b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:4014101|4014417
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MLPFPVASVPDGPLILVCLGDTLYYRFTSDMSNTEWGYRFTVTAGHLG
Nucleotide Sequence CTGCTGCCATTCCCTGTTGCTTCAGTTCCTGATGGGCCTCTGATCCTTGTGTGCCTAGGAGACACTCTGTATTACCGCTTCACCTCCGACATGAGCAACACCGAGTGGGGCTACAGATTCACCGTGACGGCCGGACACCTGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab