CircRNA Information

General Information
circRNA Basic Information
CircID chr17:40161778|40161911
Strand +
CircType exon
Host Gene ENSG00000108349.13;
Algorism CIRI2;
Sequence CTGTCCGTCCCCACTTTGCCTCTCTCCAGTCACAGTGCTTTTGGTGTCAGGCTTTTCTTCTCCCTTCTCTTCTTTTGTTGAAGAATTAACAGCATCATTAGCTTCTGATTTCAGCTCCACTTTGGAGTTTTCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:40161778|40161911 hsa-miR-134-5p 0 0 1
chr17:40161778|40161911 hsa-miR-134-3p 0 0 1
chr17:40161778|40161911 hsa-miR-184 0 0 1
chr17:40161778|40161911 hsa-miR-185-5p 0 0 1
chr17:40161778|40161911 hsa-miR-185-3p 0 0 1
chr17:40161778|40161911 hsa-miR-520g-5p 0 0 1
chr17:40161778|40161911 hsa-miR-520g-3p 0 0 1
chr17:40161778|40161911 hsa-miR-520h 0 0 1
chr17:40161778|40161911 hsa-miR-569 0 0 1
chr17:40161778|40161911 hsa-miR-421 0 0 1
chr17:40161778|40161911 hsa-miR-1253 0 0 1
chr17:40161778|40161911 hsa-miR-1322 0 0 1
chr17:40161778|40161911 hsa-miR-491-5p 0 0 1
chr17:40161778|40161911 hsa-miR-3652 1 0 0
chr17:40161778|40161911 hsa-miR-4430 1 0 0
chr17:40161778|40161911 hsa-miR-3135b 1 0 0
chr17:40161778|40161911 hsa-miR-4516 1 0 0
chr17:40161778|40161911 hsa-miR-4533 1 0 0
chr17:40161778|40161911 hsa-miR-4644 1 0 0
chr17:40161778|40161911 hsa-miR-4689 1 0 0
chr17:40161778|40161911 hsa-miR-4739 1 0 0
chr17:40161778|40161911 hsa-miR-5192 1 0 0
chr17:40161778|40161911 hsa-miR-5739 1 0 0
chr17:40161778|40161911 hsa-miR-6127 1 0 0
chr17:40161778|40161911 hsa-miR-6860 1 0 0
chr17:40161778|40161911 hsa-miR-8085 1 0 0
chr17:40161778|40161911 hsa-miR-8089 1 0 0
chr17:40161778|40161911 hsa-miR-6734-5p 1 0 0
chr17:40161778|40161911 hsa-miR-6861-5p 1 0 0
chr17:40161778|40161911 hsa-miR-7106-5p 1 0 0
chr17:40161778|40161911 hsa-miR-4695-5p 1 0 0
chr17:40161778|40161911 hsa-miR-6746-5p 1 0 0
chr17:40161778|40161911 hsa-miR-4474-3p 1 0 0
chr17:40161778|40161911 hsa-miR-4655-5p 1 0 0
chr17:40161778|40161911 hsa-miR-197-5p 1 0 0
chr17:40161778|40161911 hsa-miR-7108-5p 1 0 0
chr17:40161778|40161911 hsa-miR-204-3p 1 0 0
chr17:40161778|40161911 hsa-miR-3202 1 0 0
chr17:40161778|40161911 hsa-miR-149-3p 1 0 0
chr17:40161778|40161911 hsa-miR-423-5p 1 0 0
chr17:40161778|40161911 hsa-miR-6832-5p 1 0 0
chr17:40161778|40161911 hsa-miR-1207-5p 1 0 0
chr17:40161778|40161911 hsa-miR-1233-5p 1 0 0
chr17:40161778|40161911 hsa-miR-6812-5p 1 0 0
chr17:40161778|40161911 hsa-miR-6870-5p 1 0 0
chr17:40161778|40161911 hsa-miR-1343-5p 1 0 0
chr17:40161778|40161911 hsa-miR-5001-5p 1 0 0
chr17:40161778|40161911 hsa-miR-6743-5p 1 0 0
chr17:40161778|40161911 hsa-miR-6754-5p 1 0 0
chr17:40161778|40161911 hsa-miR-1249-5p 1 0 0
chr17:40161778|40161911 hsa-miR-6763-5p 1 0 0
chr17:40161778|40161911 hsa-miR-6797-5p 1 0 0
chr17:40161778|40161911 hsa-miR-4745-5p 1 0 0
chr17:40161778|40161911 hsa-miR-6758-5p 1 0 0
chr17:40161778|40161911 hsa-miR-6856-5p 1 0 0
chr17:40161778|40161911 hsa-miR-4700-5p 1 0 0
chr17:40161778|40161911 hsa-miR-4646-5p 1 0 0
chr17:40161778|40161911 hsa-miR-4716-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:40161778|40161911
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence LSVPTLPLSSHSAFGVRLFFSLLFFC
Nucleotide Sequence CTGTCCGTCCCCACTTTGCCTCTCTCCAGTCACAGTGCTTTTGGTGTCAGGCTTTTCTTCTCCCTTCTCTTCTTTTGTTGA
CircID chr17:40161778|40161911
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MVSGFSSPFSSFVEELTASLASDFSSTLEFS
Nucleotide Sequence TTGGTGTCAGGCTTTTCTTCTCCCTTCTCTTCTTTTGTTGAAGAATTAACAGCATCATTAGCTTCTGATTTCAGCTCCACTTTGGAGTTTTCC
CircID chr17:40161778|40161911
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQ
Nucleotide Sequence CTGAAATCAGAAGCTAATGATGCTGTTAATTCTTCAACAAAAGAAGAGAAGGGAGAAGAAAAGCCTGACACCAAAAGCACTGTGACTGGAGAGAGGCAAAGTGGGGACGGACAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab