CircRNA Information

General Information
circRNA Basic Information
CircID chr17:40163873|40164028
Strand -
CircType exon
Host Gene ENSG00000108349.13;
Algorism CIRI2;
Sequence CACCCCCTGATAGGCCCATTGAGAAGAAATCCTATTCCCGGGCAAGAAGAACTCGAACCAAAGTTGGAGATGCAGTCAAGCTTGCAGAGGAGGTGCCCCCTCCTCCTGAAGGACTGATTCCAGCACCTCCAGTCCCAGAAACCACCCCAACTCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:40163873|40164028 hsa-miR-205-5p 0 0 1
chr17:40163873|40164028 hsa-miR-205-3p 0 0 1
chr17:40163873|40164028 hsa-miR-217-5p 0 0 1
chr17:40163873|40164028 hsa-miR-217-3p 0 0 1
chr17:40163873|40164028 hsa-miR-571 0 0 1
chr17:40163873|40164028 hsa-miR-608 1 1 1
chr17:40163873|40164028 hsa-miR-659-5p 0 0 1
chr17:40163873|40164028 hsa-miR-659-3p 0 0 1
chr17:40163873|40164028 hsa-miR-765 0 0 1
chr17:40163873|40164028 hsa-miR-942-5p 0 0 1
chr17:40163873|40164028 hsa-miR-942-3p 0 0 1
chr17:40163873|40164028 hsa-miR-943 0 0 1
chr17:40163873|40164028 hsa-miR-1287-5p 0 0 1
chr17:40163873|40164028 hsa-miR-1287-3p 0 0 1
chr17:40163873|40164028 hsa-miR-1293 1 1 1
chr17:40163873|40164028 hsa-miR-513c-5p 0 0 1
chr17:40163873|40164028 hsa-miR-513c-3p 0 0 1
chr17:40163873|40164028 hsa-miR-876-3p 0 0 1
chr17:40163873|40164028 hsa-miR-342-5p 1 0 1
chr17:40163873|40164028 hsa-miR-455-3p 0 0 1
chr17:40163873|40164028 hsa-miR-876-5p 0 0 1
chr17:40163873|40164028 hsa-miR-515-5p 0 0 1
chr17:40163873|40164028 hsa-miR-9 0 0 1
chr17:40163873|40164028 hsa-miR-557 1 0 0
chr17:40163873|40164028 hsa-miR-637 1 0 0
chr17:40163873|40164028 hsa-miR-661 1 0 0
chr17:40163873|40164028 hsa-miR-762 1 0 0
chr17:40163873|40164028 hsa-miR-1183 1 0 0
chr17:40163873|40164028 hsa-miR-3147 1 0 0
chr17:40163873|40164028 hsa-miR-3170 1 0 0
chr17:40163873|40164028 hsa-miR-4298 1 0 0
chr17:40163873|40164028 hsa-miR-4259 1 0 0
chr17:40163873|40164028 hsa-miR-3652 1 0 0
chr17:40163873|40164028 hsa-miR-4507 1 0 0
chr17:40163873|40164028 hsa-miR-4515 0 1 0
chr17:40163873|40164028 hsa-miR-1587 1 0 0
chr17:40163873|40164028 hsa-miR-4651 1 0 0
chr17:40163873|40164028 hsa-miR-4669 1 0 0
chr17:40163873|40164028 hsa-miR-5572 1 0 0
chr17:40163873|40164028 hsa-miR-6085 1 0 0
chr17:40163873|40164028 hsa-miR-8052 0 1 0
chr17:40163873|40164028 hsa-miR-6747-5p 1 0 0
chr17:40163873|40164028 hsa-miR-6825-5p 1 0 0
chr17:40163873|40164028 hsa-miR-6728-5p 1 0 0
chr17:40163873|40164028 hsa-miR-6746-5p 1 0 0
chr17:40163873|40164028 hsa-miR-4653-3p 1 0 0
chr17:40163873|40164028 hsa-miR-4655-5p 1 0 0
chr17:40163873|40164028 hsa-miR-6742-5p 1 0 0
chr17:40163873|40164028 hsa-miR-6716-5p 1 0 0
chr17:40163873|40164028 hsa-miR-6793-5p 1 0 0
chr17:40163873|40164028 hsa-miR-6805-5p 0 1 0
chr17:40163873|40164028 hsa-miR-6782-5p 1 0 0
chr17:40163873|40164028 hsa-miR-6882-3p 1 0 0
chr17:40163873|40164028 hsa-miR-6740-5p 1 0 0
chr17:40163873|40164028 hsa-miR-296-3p 1 0 0
chr17:40163873|40164028 hsa-miR-6780a-3p 0 1 0
chr17:40163873|40164028 hsa-miR-1306-5p 0 1 0
chr17:40163873|40164028 hsa-miR-5584-3p 0 1 0
chr17:40163873|40164028 hsa-miR-6812-5p 1 1 0
chr17:40163873|40164028 hsa-miR-6737-5p 1 1 0
chr17:40163873|40164028 hsa-miR-6752-5p 1 1 0
chr17:40163873|40164028 hsa-miR-6756-5p 1 0 0
chr17:40163873|40164028 hsa-miR-6803-5p 1 0 0
chr17:40163873|40164028 hsa-miR-6813-5p 1 0 0
chr17:40163873|40164028 hsa-miR-6819-5p 1 0 0
chr17:40163873|40164028 hsa-miR-6842-5p 1 0 0
chr17:40163873|40164028 hsa-miR-11181-3p 0 1 0
chr17:40163873|40164028 hsa-miR-6751-5p 1 0 0
chr17:40163873|40164028 hsa-miR-3620-5p 1 0 0
chr17:40163873|40164028 hsa-miR-6846-5p 1 0 0
chr17:40163873|40164028 hsa-miR-939-5p 1 0 0
chr17:40163873|40164028 hsa-miR-3198 1 0 0
chr17:40163873|40164028 hsa-miR-3940-5p 1 0 0
chr17:40163873|40164028 hsa-miR-6855-5p 1 1 0
chr17:40163873|40164028 hsa-miR-4646-5p 1 0 0
chr17:40163873|40164028 hsa-miR-6807-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:40163873|40164028
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MIGPLRRNPIPGQEELEPKLEMQSSLQRRCPLLLKD
Nucleotide Sequence CTGATAGGCCCATTGAGAAGAAATCCTATTCCCGGGCAAGAAGAACTCGAACCAAAGTTGGAGATGCAGTCAAGCTTGCAGAGGAGGTGCCCCCTCCTCCTGAAGGACTGA
CircID chr17:40163873|40164028
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MHLQLWFEFFLPGNRISSQWAYQGV
Nucleotide Sequence CTGCATCTCCAACTTTGGTTCGAGTTCTTCTTGCCCGGGAATAGGATTTCTTCTCAATGGGCCTATCAGGGGGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab