CircRNA Information

General Information
circRNA Basic Information
CircID chr17:40171162|40171341
Strand +
CircType exon
Host Gene ENSG00000108349.13;
Algorism CIRI2;
Sequence CTCAAAAGACTGAGCCCTGAGGACTATGTGAATACACACCCCTAAAGGCAAAGGCTCTCACTCCACCATCCCTTTCTCACAAAAGCATCTGGTGTGCCATCTCTCCCCACAGTAGGGTATTGGCCCTCAGCAGAGAACAGAAGCCCATCATAGTACAGGTATTGATGGATGCTCAGACTC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:40171162|40171341 hsa-miR-23a-5p 0 0 1
chr17:40171162|40171341 hsa-miR-23a-3p 0 0 1
chr17:40171162|40171341 hsa-miR-183-5p 0 0 1
chr17:40171162|40171341 hsa-miR-183-3p 0 0 1
chr17:40171162|40171341 hsa-miR-23b-5p 0 0 1
chr17:40171162|40171341 hsa-miR-23b-3p 0 0 1
chr17:40171162|40171341 hsa-miR-122-5p 0 0 1
chr17:40171162|40171341 hsa-miR-122-3p 0 0 1
chr17:40171162|40171341 hsa-miR-185-5p 0 0 1
chr17:40171162|40171341 hsa-miR-185-3p 0 0 1
chr17:40171162|40171341 hsa-miR-539-5p 0 0 1
chr17:40171162|40171341 hsa-miR-539-3p 0 0 1
chr17:40171162|40171341 hsa-miR-622 0 0 1
chr17:40171162|40171341 hsa-miR-630 0 0 1
chr17:40171162|40171341 hsa-miR-758-5p 0 0 1
chr17:40171162|40171341 hsa-miR-758-3p 0 0 1
chr17:40171162|40171341 hsa-miR-892a 0 0 1
chr17:40171162|40171341 hsa-miR-939-5p 0 0 1
chr17:40171162|40171341 hsa-miR-939-3p 0 0 1
chr17:40171162|40171341 hsa-miR-1266-5p 0 0 1
chr17:40171162|40171341 hsa-miR-1266-3p 0 0 1
chr17:40171162|40171341 hsa-miR-1272 0 0 1
chr17:40171162|40171341 hsa-miR-1322 0 0 1
chr17:40171162|40171341 hsa-miR-486-5p 0 0 1
chr17:40171162|40171341 hsa-miR-491-5p 0 0 1
chr17:40171162|40171341 hsa-miR-24 0 0 1
chr17:40171162|40171341 hsa-miR-608 1 1 0
chr17:40171162|40171341 hsa-miR-612 1 0 0
chr17:40171162|40171341 hsa-miR-637 1 0 0
chr17:40171162|40171341 hsa-miR-3154 1 0 0
chr17:40171162|40171341 hsa-miR-1193 0 1 0
chr17:40171162|40171341 hsa-miR-3175 0 1 0
chr17:40171162|40171341 hsa-miR-3909 1 0 0
chr17:40171162|40171341 hsa-miR-3921 0 1 0
chr17:40171162|40171341 hsa-miR-4455 0 1 0
chr17:40171162|40171341 hsa-miR-4651 1 0 0
chr17:40171162|40171341 hsa-miR-4656 1 0 0
chr17:40171162|40171341 hsa-miR-4706 1 0 0
chr17:40171162|40171341 hsa-miR-5192 1 0 0
chr17:40171162|40171341 hsa-miR-6071 0 1 0
chr17:40171162|40171341 hsa-miR-8085 0 1 0
chr17:40171162|40171341 hsa-miR-4433b-3p 1 0 0
chr17:40171162|40171341 hsa-miR-93-3p 0 1 0
chr17:40171162|40171341 hsa-miR-4731-5p 1 0 0
chr17:40171162|40171341 hsa-miR-6825-5p 1 0 0
chr17:40171162|40171341 hsa-miR-6857-5p 1 0 0
chr17:40171162|40171341 hsa-miR-6728-5p 1 0 0
chr17:40171162|40171341 hsa-miR-8071 1 0 0
chr17:40171162|40171341 hsa-miR-5187-5p 1 0 0
chr17:40171162|40171341 hsa-miR-6757-5p 1 1 0
chr17:40171162|40171341 hsa-miR-6880-5p 1 1 0
chr17:40171162|40171341 hsa-miR-7160-5p 0 1 0
chr17:40171162|40171341 hsa-miR-197-5p 1 0 0
chr17:40171162|40171341 hsa-miR-6742-5p 1 0 0
chr17:40171162|40171341 hsa-miR-6716-5p 1 0 0
chr17:40171162|40171341 hsa-miR-6796-5p 1 1 0
chr17:40171162|40171341 hsa-miR-6782-5p 1 1 0
chr17:40171162|40171341 hsa-miR-6786-5p 1 0 0
chr17:40171162|40171341 hsa-miR-5088-5p 0 1 0
chr17:40171162|40171341 hsa-miR-1226-5p 1 0 0
chr17:40171162|40171341 hsa-miR-4640-5p 1 0 0
chr17:40171162|40171341 hsa-miR-3127-5p 0 1 0
chr17:40171162|40171341 hsa-miR-6789-5p 1 0 0
chr17:40171162|40171341 hsa-miR-3158-3p 1 0 0
chr17:40171162|40171341 hsa-miR-7151-5p 1 1 0
chr17:40171162|40171341 hsa-miR-1207-5p 1 0 0
chr17:40171162|40171341 hsa-miR-1233-5p 1 0 0
chr17:40171162|40171341 hsa-miR-6812-5p 1 0 0
chr17:40171162|40171341 hsa-miR-6737-5p 1 0 0
chr17:40171162|40171341 hsa-miR-6752-5p 1 0 0
chr17:40171162|40171341 hsa-miR-6756-5p 1 0 0
chr17:40171162|40171341 hsa-miR-6803-5p 1 0 0
chr17:40171162|40171341 hsa-miR-6819-5p 1 0 0
chr17:40171162|40171341 hsa-miR-10401-5p 1 0 0
chr17:40171162|40171341 hsa-miR-6763-5p 1 0 0
chr17:40171162|40171341 hsa-miR-3620-5p 1 0 0
chr17:40171162|40171341 hsa-miR-6883-5p 1 0 0
chr17:40171162|40171341 hsa-miR-1238-5p 1 0 0
chr17:40171162|40171341 hsa-miR-4758-5p 1 0 0
chr17:40171162|40171341 hsa-miR-6731-5p 0 1 0
chr17:40171162|40171341 hsa-miR-7156-5p 0 1 0
chr17:40171162|40171341 hsa-miR-10525-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:40171162|40171341
ORF Type ORF1
Protein Length 44
Nucleotide Length 135
Protein Sequence MSIHQYLYYDGLLFSAEGQYPTVGRDGTPDAFVRKGWWSESLCL
Nucleotide Sequence CTGAGCATCCATCAATACCTGTACTATGATGGGCTTCTGTTCTCTGCTGAGGGCCAATACCCTACTGTGGGGAGAGATGGCACACCAGATGCTTTTGTGAGAAAGGGATGGTGGAGTGAGAGCCTTTGCCTTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab