CircRNA Information

General Information
circRNA Basic Information
CircID chr17:40456539|40456766
Strand +
CircType exon
Host Gene ENSG00000141753.6;
Algorism CIRI2;
Sequence ACCCATGCTCACAAACACACACACACGCACGCACACGCACACGTGCACACGCGCATTTGAGGGAAACTTCTGGGCCGCAGGCAGAGACAGGACTCAGACTCAGACTCCACTCTGGGTCAGCTCTGCAGCCTCCAGAGCACAGGAGTAGCAGGGGACGCTGAGTCCCTGGCCTGCTGGCAGGCCTCACTCTCGAAAGCTGTCAGCCAGCTGGTGGCAGTCCAGCTCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:40456539|40456766 hsa-miR-210-5p 0 0 1
chr17:40456539|40456766 hsa-miR-210-3p 0 0 1
chr17:40456539|40456766 hsa-miR-214-5p 0 0 1
chr17:40456539|40456766 hsa-miR-214-3p 0 0 1
chr17:40456539|40456766 hsa-miR-422a 0 0 1
chr17:40456539|40456766 hsa-miR-593-5p 0 0 1
chr17:40456539|40456766 hsa-miR-593-3p 0 0 1
chr17:40456539|40456766 hsa-miR-627-5p 0 0 1
chr17:40456539|40456766 hsa-miR-627-3p 0 0 1
chr17:40456539|40456766 hsa-miR-650 0 0 1
chr17:40456539|40456766 hsa-miR-758-5p 0 0 1
chr17:40456539|40456766 hsa-miR-758-3p 0 0 1
chr17:40456539|40456766 hsa-miR-920 0 0 1
chr17:40456539|40456766 hsa-miR-924 0 0 1
chr17:40456539|40456766 hsa-miR-939-5p 0 0 1
chr17:40456539|40456766 hsa-miR-939-3p 0 0 1
chr17:40456539|40456766 hsa-miR-1226-5p 0 0 1
chr17:40456539|40456766 hsa-miR-1226-3p 0 0 1
chr17:40456539|40456766 hsa-miR-1202 0 0 1
chr17:40456539|40456766 hsa-miR-1288-5p 0 0 1
chr17:40456539|40456766 hsa-miR-1288-3p 0 0 1
chr17:40456539|40456766 hsa-miR-512-5p 0 0 1
chr17:40456539|40456766 hsa-miR-485-5p 0 0 1
chr17:40456539|40456766 hsa-miR-1289 0 0 1
chr17:40456539|40456766 hsa-miR-1207-3p 0 0 1
chr17:40456539|40456766 hsa-miR-331-3p 0 0 1
chr17:40456539|40456766 hsa-miR-105 0 0 1
chr17:40456539|40456766 hsa-miR-642 0 0 1
chr17:40456539|40456766 hsa-miR-1308 0 0 1
chr17:40456539|40456766 hsa-miR-378 0 0 1
chr17:40456539|40456766 hsa-miR-1269 0 0 1
chr17:40456539|40456766 hsa-miR-516b 0 0 1
chr17:40456539|40456766 hsa-miR-346 0 1 0
chr17:40456539|40456766 hsa-miR-637 0 1 0
chr17:40456539|40456766 hsa-miR-297 1 1 0
chr17:40456539|40456766 hsa-miR-4300 0 1 0
chr17:40456539|40456766 hsa-miR-4316 0 1 0
chr17:40456539|40456766 hsa-miR-378f 0 1 0
chr17:40456539|40456766 hsa-miR-4455 1 0 0
chr17:40456539|40456766 hsa-miR-378h 0 1 0
chr17:40456539|40456766 hsa-miR-4487 0 1 0
chr17:40456539|40456766 hsa-miR-1269b 0 1 0
chr17:40456539|40456766 hsa-miR-4530 0 1 0
chr17:40456539|40456766 hsa-miR-5691 0 1 0
chr17:40456539|40456766 hsa-miR-12115 0 1 0
chr17:40456539|40456766 hsa-miR-6894-5p 1 1 0
chr17:40456539|40456766 hsa-miR-1972 0 1 0
chr17:40456539|40456766 hsa-miR-6089 1 0 0
chr17:40456539|40456766 hsa-miR-6821-5p 1 0 0
chr17:40456539|40456766 hsa-miR-6735-3p 1 0 0
chr17:40456539|40456766 hsa-miR-4693-3p 0 1 0
chr17:40456539|40456766 hsa-miR-4715-3p 0 1 0
chr17:40456539|40456766 hsa-miR-5001-3p 0 1 0
chr17:40456539|40456766 hsa-miR-4690-5p 0 1 0
chr17:40456539|40456766 hsa-miR-3158-5p 0 1 0
chr17:40456539|40456766 hsa-miR-516b-5p 0 1 0
chr17:40456539|40456766 hsa-miR-574-5p 1 1 0
chr17:40456539|40456766 hsa-miR-3678-3p 0 1 0
chr17:40456539|40456766 hsa-miR-1910-5p 1 1 0
chr17:40456539|40456766 hsa-miR-7113-5p 0 1 0
chr17:40456539|40456766 hsa-miR-4649-3p 1 1 0
chr17:40456539|40456766 hsa-miR-518c-5p 0 1 0
chr17:40456539|40456766 hsa-miR-6838-3p 0 1 0
chr17:40456539|40456766 hsa-miR-5002-3p 0 1 0
chr17:40456539|40456766 hsa-miR-372-5p 0 1 0
chr17:40456539|40456766 hsa-miR-1343-5p 0 1 0
chr17:40456539|40456766 hsa-miR-5001-5p 1 1 0
chr17:40456539|40456766 hsa-miR-6726-5p 0 1 0
chr17:40456539|40456766 hsa-miR-3620-5p 1 0 0
chr17:40456539|40456766 hsa-miR-4745-5p 1 0 0
chr17:40456539|40456766 hsa-miR-6848-5p 0 1 0
chr17:40456539|40456766 hsa-miR-5008-3p 0 1 0
chr17:40456539|40456766 hsa-miR-6790-5p 1 0 0
chr17:40456539|40456766 hsa-miR-4722-3p 0 1 0
chr17:40456539|40456766 hsa-miR-6801-3p 0 1 0
chr17:40456539|40456766 hsa-miR-6810-3p 1 1 0
chr17:40456539|40456766 hsa-miR-6884-5p 0 1 0
chr17:40456539|40456766 hsa-miR-3619-5p 0 1 0
chr17:40456539|40456766 hsa-miR-6764-5p 0 1 0
chr17:40456539|40456766 hsa-miR-5699-3p 0 1 0
chr17:40456539|40456766 hsa-miR-7157-3p 0 1 0
chr17:40456539|40456766 hsa-miR-1912-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr17:40456539|40456766
ORF Type ORF1
Protein Length 53
Nucleotide Length 159
Protein Sequence MGRRQRQDSDSDSTLGQLCSLQSTGVAGDAESLACWQASLSKAVSQLVAVQLP
Nucleotide Sequence CTGGGCCGCAGGCAGAGACAGGACTCAGACTCAGACTCCACTCTGGGTCAGCTCTGCAGCCTCCAGAGCACAGGAGTAGCAGGGGACGCTGAGTCCCTGGCCTGCTGGCAGGCCTCACTCTCGAAAGCTGTCAGCCAGCTGGTGGCAGTCCAGCTCCCC

CircID chr17:40456539|40456766
ORF Type ORF2
Protein Length 47
Nucleotide Length 144
Protein Sequence MLTNTHTRTHTHTCTRAFEGNFWAAGRDRTQTQTPLWVSSAASRAQE
Nucleotide Sequence ATGCTCACAAACACACACACACGCACGCACACGCACACGTGCACACGCGCATTTGAGGGAAACTTCTGGGCCGCAGGCAGAGACAGGACTCAGACTCAGACTCCACTCTGGGTCAGCTCTGCAGCCTCCAGAGCACAGGAGTAG

CircID chr17:40456539|40456766
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MRETSGPQAETGLRLRLHSGSALQPPEHRSSRGR
Nucleotide Sequence TTGAGGGAAACTTCTGGGCCGCAGGCAGAGACAGGACTCAGACTCAGACTCCACTCTGGGTCAGCTCTGCAGCCTCCAGAGCACAGGAGTAGCAGGGGACGCTGA

CircID chr17:40456539|40456766
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MPAGQGLSVPCYSCALEAAELTQSGV
Nucleotide Sequence CTGCCAGCAGGCCAGGGACTCAGCGTCCCCTGCTACTCCTGTGCTCTGGAGGCTGCAGAGCTGACCCAGAGTGGAGTCTGA

CircID chr17:40456539|40456766
ORF Type ORF5
Protein Length 30
Nucleotide Length 90
Protein Sequence MSLPAAQKFPSNARVHVCVCVRVCVFVSMG
Nucleotide Sequence CTGTCTCTGCCTGCGGCCCAGAAGTTTCCCTCAAATGCGCGTGTGCACGTGTGCGTGTGCGTGCGTGTGTGTGTGTTTGTGAGCATGGGT

CircID chr17:40456539|40456766
ORF Type ORF6
Protein Length 28
Nucleotide Length 87
Protein Sequence MTAFESEACQQARDSASPATPVLWRLQS
Nucleotide Sequence CTGACAGCTTTCGAGAGTGAGGCCTGCCAGCAGGCCAGGGACTCAGCGTCCCCTGCTACTCCTGTGCTCTGGAGGCTGCAGAGCTGA

CircID chr17:40456539|40456766
ORF Type ORF7
Protein Length 50
Nucleotide Length 150
Protein Sequence MLLLCSGGCRADPEWSLSLSPVSACGPEVSLKCACARVRVRACVCVCEHG
Nucleotide Sequence CTGCTACTCCTGTGCTCTGGAGGCTGCAGAGCTGACCCAGAGTGGAGTCTGAGTCTGAGTCCTGTCTCTGCCTGCGGCCCAGAAGTTTCCCTCAAATGCGCGTGTGCACGTGTGCGTGTGCGTGCGTGTGTGTGTGTTTGTGAGCATGGG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites