CircRNA Information

General Information
circRNA Basic Information
CircID chr17:40630714|40630840
Strand -
CircType exon
Host Gene ENSG00000073584.17;
Algorism CIRI2;
Sequence CTGTCTCCATCGGAATGTTCTCGTCGTCTTTCTTCTCCTCGCCTTTGTTAGCTGCTTGTTCTTCCTCAGGAACGATGCTGCTCTGACTGCGCTCAGCTTGCTCTGCGGCCTCCTTCTCCCTTTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:40630714|40630840 hsa-miR-15a-5p 0 0 1
chr17:40630714|40630840 hsa-miR-15a-3p 0 0 1
chr17:40630714|40630840 hsa-miR-107 0 1 1
chr17:40630714|40630840 hsa-miR-15b-5p 0 0 1
chr17:40630714|40630840 hsa-miR-15b-3p 0 0 1
chr17:40630714|40630840 hsa-miR-195-5p 0 0 1
chr17:40630714|40630840 hsa-miR-195-3p 0 0 1
chr17:40630714|40630840 hsa-miR-424-5p 0 0 1
chr17:40630714|40630840 hsa-miR-424-3p 0 0 1
chr17:40630714|40630840 hsa-miR-495-5p 0 0 1
chr17:40630714|40630840 hsa-miR-495-3p 0 0 1
chr17:40630714|40630840 hsa-miR-497-5p 0 0 1
chr17:40630714|40630840 hsa-miR-497-3p 0 0 1
chr17:40630714|40630840 hsa-miR-646 0 0 1
chr17:40630714|40630840 hsa-miR-543 0 0 1
chr17:40630714|40630840 hsa-miR-1200 0 0 1
chr17:40630714|40630840 hsa-miR-1253 0 0 1
chr17:40630714|40630840 hsa-miR-339-3p 0 0 1
chr17:40630714|40630840 hsa-miR-151-5p 0 0 1
chr17:40630714|40630840 hsa-miR-103 0 0 1
chr17:40630714|40630840 hsa-miR-16 0 0 1
chr17:40630714|40630840 hsa-miR-663a 1 0 0
chr17:40630714|40630840 hsa-miR-765 1 1 0
chr17:40630714|40630840 hsa-miR-1295a 1 0 0
chr17:40630714|40630840 hsa-miR-1268a 1 0 0
chr17:40630714|40630840 hsa-miR-2278 0 1 0
chr17:40630714|40630840 hsa-miR-3131 1 0 0
chr17:40630714|40630840 hsa-miR-3154 1 0 0
chr17:40630714|40630840 hsa-miR-3175 1 0 0
chr17:40630714|40630840 hsa-miR-3185 1 0 0
chr17:40630714|40630840 hsa-miR-4271 1 1 0
chr17:40630714|40630840 hsa-miR-1268b 1 0 0
chr17:40630714|40630840 hsa-miR-4428 1 0 0
chr17:40630714|40630840 hsa-miR-4468 1 0 0
chr17:40630714|40630840 hsa-miR-4484 1 1 0
chr17:40630714|40630840 hsa-miR-4487 1 0 0
chr17:40630714|40630840 hsa-miR-2392 1 0 0
chr17:40630714|40630840 hsa-miR-4510 1 0 0
chr17:40630714|40630840 hsa-miR-4516 1 1 0
chr17:40630714|40630840 hsa-miR-4533 1 1 0
chr17:40630714|40630840 hsa-miR-4689 1 0 0
chr17:40630714|40630840 hsa-miR-4706 1 1 0
chr17:40630714|40630840 hsa-miR-4737 1 0 0
chr17:40630714|40630840 hsa-miR-4739 1 1 0
chr17:40630714|40630840 hsa-miR-5703 1 0 0
chr17:40630714|40630840 hsa-miR-6088 1 0 0
chr17:40630714|40630840 hsa-miR-6124 1 0 0
chr17:40630714|40630840 hsa-miR-6127 1 0 0
chr17:40630714|40630840 hsa-miR-6133 1 0 0
chr17:40630714|40630840 hsa-miR-8085 1 0 0
chr17:40630714|40630840 hsa-miR-12118 1 1 0
chr17:40630714|40630840 hsa-miR-4433b-3p 1 0 0
chr17:40630714|40630840 hsa-miR-128-1-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6809-5p 1 0 0
chr17:40630714|40630840 hsa-miR-3150a-3p 1 0 0
chr17:40630714|40630840 hsa-miR-7106-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6894-5p 1 0 0
chr17:40630714|40630840 hsa-miR-125a-3p 1 0 0
chr17:40630714|40630840 hsa-miR-6799-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6833-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6089 1 1 0
chr17:40630714|40630840 hsa-miR-6757-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6880-5p 1 0 0
chr17:40630714|40630840 hsa-miR-7847-3p 1 0 0
chr17:40630714|40630840 hsa-miR-4695-5p 1 1 0
chr17:40630714|40630840 hsa-miR-6746-5p 1 1 0
chr17:40630714|40630840 hsa-miR-4722-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6730-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6716-5p 1 0 0
chr17:40630714|40630840 hsa-miR-1292-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6805-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6798-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6760-5p 1 1 0
chr17:40630714|40630840 hsa-miR-3150b-3p 1 0 0
chr17:40630714|40630840 hsa-miR-4640-5p 1 0 0
chr17:40630714|40630840 hsa-miR-30c-2-3p 1 0 0
chr17:40630714|40630840 hsa-miR-1908-5p 1 0 0
chr17:40630714|40630840 hsa-miR-92b-5p 1 0 0
chr17:40630714|40630840 hsa-miR-4732-5p 1 0 0
chr17:40630714|40630840 hsa-miR-3202 1 1 0
chr17:40630714|40630840 hsa-miR-103a-3p 0 1 0
chr17:40630714|40630840 hsa-miR-6824-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6886-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6781-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6878-5p 1 1 0
chr17:40630714|40630840 hsa-miR-6877-5p 1 0 0
chr17:40630714|40630840 hsa-miR-5010-5p 1 0 0
chr17:40630714|40630840 hsa-miR-7162-3p 1 0 0
chr17:40630714|40630840 hsa-miR-423-5p 1 0 0
chr17:40630714|40630840 hsa-miR-4773 0 1 0
chr17:40630714|40630840 hsa-miR-6501-3p 0 1 0
chr17:40630714|40630840 hsa-miR-10400-5p 1 0 0
chr17:40630714|40630840 hsa-miR-1207-5p 1 0 0
chr17:40630714|40630840 hsa-miR-1233-5p 1 0 0
chr17:40630714|40630840 hsa-miR-4763-3p 1 0 0
chr17:40630714|40630840 hsa-miR-6778-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6787-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6851-5p 1 0 0
chr17:40630714|40630840 hsa-miR-11181-3p 1 1 0
chr17:40630714|40630840 hsa-miR-6788-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6808-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6879-5p 1 0 0
chr17:40630714|40630840 hsa-miR-7111-5p 1 0 0
chr17:40630714|40630840 hsa-miR-4728-5p 1 0 0
chr17:40630714|40630840 hsa-miR-5196-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6780b-5p 1 1 0
chr17:40630714|40630840 hsa-miR-6836-5p 1 0 0
chr17:40630714|40630840 hsa-miR-10396b-5p 1 0 0
chr17:40630714|40630840 hsa-miR-10526-3p 1 0 0
chr17:40630714|40630840 hsa-miR-1237-5p 1 0 0
chr17:40630714|40630840 hsa-miR-4649-5p 1 0 0
chr17:40630714|40630840 hsa-miR-4725-3p 1 0 0
chr17:40630714|40630840 hsa-miR-4749-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6729-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6738-5p 1 0 0
chr17:40630714|40630840 hsa-miR-675-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6794-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6858-5p 1 1 0
chr17:40630714|40630840 hsa-miR-4697-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6511a-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6731-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6758-5p 1 0 0
chr17:40630714|40630840 hsa-miR-3173-3p 1 1 0
chr17:40630714|40630840 hsa-miR-4747-5p 1 0 0
chr17:40630714|40630840 hsa-miR-6876-5p 0 1 0
chr17:40630714|40630840 hsa-miR-4716-3p 1 0 0
chr17:40630714|40630840 hsa-miR-6791-5p 1 0 0
chr17:40630714|40630840 hsa-miR-146a-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:40630714|40630840
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MLVLPQERCCSDCAQLALRPPSPFP
Nucleotide Sequence CTGCTTGTTCTTCCTCAGGAACGATGCTGCTCTGACTGCGCTCAGCTTGCTCTGCGGCCTCCTTCTCCCTTTCCT
CircID chr17:40630714|40630840
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MSAVRAASFLRKNKQLTKARRRKTTRTFRWRQ
Nucleotide Sequence CTGAGCGCAGTCAGAGCAGCATCGTTCCTGAGGAAGAACAAGCAGCTAACAAAGGCGAGGAGAAGAAAGACGACGAGAACATTCCGATGGAGACAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab