CircRNA Information

General Information
circRNA Basic Information
CircID chr17:41502937|41503098
Strand -
CircType exon
Host Gene ENSG00000171401.13;
Algorism CIRI2;
Sequence CTTGGTGTGGAACCATTCCTCAGCATCCCGGCGGTTCCTCTCTGCCATGGCCTCGTACTGCTCCCTCATCTCTGCCAGCACGCGGGTCAGGTCAATGCCTGGGGTGGCATCCATCTCCACGTTGACCTGGCCGACCACCTGGTTGCTAAATTCCTTCATCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:41502937|41503098 hsa-miR-192-5p 0 0 1
chr17:41502937|41503098 hsa-miR-192-3p 0 0 1
chr17:41502937|41503098 hsa-miR-215-5p 0 0 1
chr17:41502937|41503098 hsa-miR-215-3p 0 0 1
chr17:41502937|41503098 hsa-miR-143-5p 0 0 1
chr17:41502937|41503098 hsa-miR-143-3p 0 0 1
chr17:41502937|41503098 hsa-miR-620 0 0 1
chr17:41502937|41503098 hsa-miR-631 0 0 1
chr17:41502937|41503098 hsa-miR-1256 0 0 1
chr17:41502937|41503098 hsa-miR-1270 0 0 1
chr17:41502937|41503098 hsa-miR-1252-5p 0 0 1
chr17:41502937|41503098 hsa-miR-1252-3p 0 0 1
chr17:41502937|41503098 hsa-miR-323-5p 0 0 1
chr17:41502937|41503098 hsa-miR-1471 1 0 0
chr17:41502937|41503098 hsa-miR-3132 1 0 0
chr17:41502937|41503098 hsa-miR-3185 1 0 0
chr17:41502937|41503098 hsa-miR-4451 1 0 0
chr17:41502937|41503098 hsa-miR-4466 1 0 0
chr17:41502937|41503098 hsa-miR-4487 1 0 0
chr17:41502937|41503098 hsa-miR-4498 1 0 0
chr17:41502937|41503098 hsa-miR-4510 1 0 0
chr17:41502937|41503098 hsa-miR-4656 1 0 0
chr17:41502937|41503098 hsa-miR-4688 1 0 0
chr17:41502937|41503098 hsa-miR-4739 1 0 0
chr17:41502937|41503098 hsa-miR-6081 1 0 0
chr17:41502937|41503098 hsa-miR-6088 1 0 0
chr17:41502937|41503098 hsa-miR-6090 1 0 0
chr17:41502937|41503098 hsa-miR-6127 1 0 0
chr17:41502937|41503098 hsa-miR-6133 1 0 0
chr17:41502937|41503098 hsa-miR-7150 1 0 0
chr17:41502937|41503098 hsa-miR-8073 1 0 0
chr17:41502937|41503098 hsa-miR-8077 1 0 0
chr17:41502937|41503098 hsa-miR-8085 1 0 0
chr17:41502937|41503098 hsa-miR-12128 1 0 0
chr17:41502937|41503098 hsa-miR-150-3p 1 0 0
chr17:41502937|41503098 hsa-miR-6734-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6857-5p 1 0 0
chr17:41502937|41503098 hsa-miR-766-5p 1 0 0
chr17:41502937|41503098 hsa-miR-5187-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6089 1 0 0
chr17:41502937|41503098 hsa-miR-6757-5p 1 0 0
chr17:41502937|41503098 hsa-miR-4695-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6741-5p 1 0 0
chr17:41502937|41503098 hsa-miR-197-5p 1 0 0
chr17:41502937|41503098 hsa-miR-1292-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6772-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6805-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6827-5p 1 0 0
chr17:41502937|41503098 hsa-miR-2467-3p 1 0 0
chr17:41502937|41503098 hsa-miR-6821-5p 1 0 0
chr17:41502937|41503098 hsa-miR-1226-5p 1 0 0
chr17:41502937|41503098 hsa-miR-7854-3p 1 0 0
chr17:41502937|41503098 hsa-miR-149-3p 1 0 0
chr17:41502937|41503098 hsa-miR-6832-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6868-5p 1 0 0
chr17:41502937|41503098 hsa-miR-1207-5p 1 0 0
chr17:41502937|41503098 hsa-miR-1233-5p 1 0 0
chr17:41502937|41503098 hsa-miR-4763-3p 1 0 0
chr17:41502937|41503098 hsa-miR-6870-5p 1 0 0
chr17:41502937|41503098 hsa-miR-1343-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6726-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6743-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6803-5p 1 0 0
chr17:41502937|41503098 hsa-miR-1249-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6808-5p 1 0 0
chr17:41502937|41503098 hsa-miR-7111-5p 1 0 0
chr17:41502937|41503098 hsa-miR-4728-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6846-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6848-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6858-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6831-5p 1 0 0
chr17:41502937|41503098 hsa-miR-939-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6511b-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6856-5p 1 0 0
chr17:41502937|41503098 hsa-miR-9851-5p 1 0 0
chr17:41502937|41503098 hsa-miR-6529-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:41502937|41503098
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MLPHLCQHAGQVNAWGGIHLHVDLADHLVAKFLHL
Nucleotide Sequence CTGCTCCCTCATCTCTGCCAGCACGCGGGTCAGGTCAATGCCTGGGGTGGCATCCATCTCCACGTTGACCTGGCCGACCACCTGGTTGCTAAATTCCTTCATCTC
CircID chr17:41502937|41503098
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence LVWNHSSASRRFLSAMASYCSLISASTRVRSMPGVASISTLTWPTTWLLNSFI
Nucleotide Sequence TTGGTGTGGAACCATTCCTCAGCATCCCGGCGGTTCCTCTCTGCCATGGCCTCGTACTGCTCCCTCATCTCTGCCAGCACGCGGGTCAGGTCAATGCCTGGGGTGGCATCCATCTCCACGTTGACCTGGCCGACCACCTGGTTGCTAAATTCCTTCATC
CircID chr17:41502937|41503098
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MPWPRTAPSSLPARGSGQCLGWHPSPR
Nucleotide Sequence CTGCCATGGCCTCGTACTGCTCCCTCATCTCTGCCAGCACGCGGGTCAGGTCAATGCCTGGGGTGGCATCCATCTCCACGTTGA
CircID chr17:41502937|41503098
ORF Type ORF4
Protein Length 53
Nucleotide Length 159
Protein Sequence MKEFSNQVVGQVNVEMDATPGIDLTRVLAEMREQYEAMAERNRRDAEEWFHTK
Nucleotide Sequence ATGAAGGAATTTAGCAACCAGGTGGTCGGCCAGGTCAACGTGGAGATGGATGCCACCCCAGGCATTGACCTGACCCGCGTGCTGGCAGAGATGAGGGAGCAGTACGAGGCCATGGCAGAGAGGAACCGCCGGGATGCTGAGGAATGGTTCCACACCAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab