CircRNA Information

General Information
circRNA Basic Information
CircID chr17:41515614|41515989
Strand -
CircType exon
Host Gene ENSG00000171346.12;
Algorism CIRI2;
Sequence CAATGAGCCCCTGGATCTGCTGCAGCTGCGTGGCATAGCGGCACTCTGTCTCGGCCAGTGAGTTCTCCAGCCCAGCTTTCTGGGGGAGTGACAGATGCATAGACACATCAGGCTAGAAAGGAAGCCACTGAGGGCAAGCAGGGAGGGGGCACTGAATGGAGTTCAGGGAACCACCTCTTGAGGGGGCTTGAGAACTCCAAGGCTTAAATAGCCAGGAAGAGTGGGAGCTTCTACCACCCGAGAGGCTGGGATGGGGCGCGAGTGGCCGTACCATGCTGAGCTGGGACTGCAGCTCGATCTCCAGCTCCTGCATCGTGCGTCTCAGGTCTGTGATCTCCGTCTTGCTGGTCTGGATCATTTCTGTGTTGGAGGCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:41515614|41515989 hsa-miR-107 0 0 1
chr17:41515614|41515989 hsa-miR-148a-5p 0 0 1
chr17:41515614|41515989 hsa-miR-148a-3p 0 0 1
chr17:41515614|41515989 hsa-miR-152-5p 0 0 1
chr17:41515614|41515989 hsa-miR-152-3p 0 0 1
chr17:41515614|41515989 hsa-miR-136-5p 0 0 1
chr17:41515614|41515989 hsa-miR-136-3p 0 0 1
chr17:41515614|41515989 hsa-miR-146a-5p 0 0 1
chr17:41515614|41515989 hsa-miR-146a-3p 0 0 1
chr17:41515614|41515989 hsa-miR-320a-5p 0 0 1
chr17:41515614|41515989 hsa-miR-320a-3p 0 0 1
chr17:41515614|41515989 hsa-miR-379-5p 0 0 1
chr17:41515614|41515989 hsa-miR-379-3p 0 0 1
chr17:41515614|41515989 hsa-miR-148b-5p 0 0 1
chr17:41515614|41515989 hsa-miR-148b-3p 0 0 1
chr17:41515614|41515989 hsa-miR-335-5p 0 0 1
chr17:41515614|41515989 hsa-miR-335-3p 0 0 1
chr17:41515614|41515989 hsa-miR-432-5p 0 0 1
chr17:41515614|41515989 hsa-miR-432-3p 0 0 1
chr17:41515614|41515989 hsa-miR-193b-5p 0 0 1
chr17:41515614|41515989 hsa-miR-193b-3p 0 0 1
chr17:41515614|41515989 hsa-miR-558 0 0 1
chr17:41515614|41515989 hsa-miR-586 0 0 1
chr17:41515614|41515989 hsa-miR-596 0 0 1
chr17:41515614|41515989 hsa-miR-620 0 0 1
chr17:41515614|41515989 hsa-miR-634 0 0 1
chr17:41515614|41515989 hsa-miR-640 0 0 1
chr17:41515614|41515989 hsa-miR-668-5p 0 0 1
chr17:41515614|41515989 hsa-miR-668-3p 0 0 1
chr17:41515614|41515989 hsa-miR-874-5p 0 0 1
chr17:41515614|41515989 hsa-miR-874-3p 0 0 1
chr17:41515614|41515989 hsa-miR-708-5p 0 0 1
chr17:41515614|41515989 hsa-miR-708-3p 0 0 1
chr17:41515614|41515989 hsa-miR-922 0 0 1
chr17:41515614|41515989 hsa-miR-1236-5p 0 0 1
chr17:41515614|41515989 hsa-miR-1236-3p 0 0 1
chr17:41515614|41515989 hsa-miR-1286 0 0 1
chr17:41515614|41515989 hsa-miR-1293 0 0 1
chr17:41515614|41515989 hsa-miR-1270 0 0 1
chr17:41515614|41515989 hsa-miR-513c-5p 0 0 1
chr17:41515614|41515989 hsa-miR-513c-3p 0 0 1
chr17:41515614|41515989 hsa-miR-139-3p 0 0 1
chr17:41515614|41515989 hsa-miR-532-3p 0 0 1
chr17:41515614|41515989 hsa-miR-1184 0 0 1
chr17:41515614|41515989 hsa-miR-361-3p 0 0 1
chr17:41515614|41515989 hsa-miR-28-5p 0 0 1
chr17:41515614|41515989 hsa-miR-876-3p 0 0 1
chr17:41515614|41515989 hsa-miR-320b 1 0 1
chr17:41515614|41515989 hsa-miR-320c 0 0 1
chr17:41515614|41515989 hsa-miR-125a-5p 0 0 1
chr17:41515614|41515989 hsa-miR-483-3p 0 0 1
chr17:41515614|41515989 hsa-miR-320d 0 0 1
chr17:41515614|41515989 hsa-miR-146b-5p 0 0 1
chr17:41515614|41515989 hsa-miR-193a-3p 0 0 1
chr17:41515614|41515989 hsa-miR-516a-3p 0 0 1
chr17:41515614|41515989 hsa-miR-1274a 0 0 1
chr17:41515614|41515989 hsa-miR-125b 0 0 1
chr17:41515614|41515989 hsa-miR-103 0 0 1
chr17:41515614|41515989 hsa-miR-1201 0 0 1
chr17:41515614|41515989 hsa-miR-371-3p 0 0 1
chr17:41515614|41515989 hsa-miR-762 1 0 0
chr17:41515614|41515989 hsa-miR-1825 1 0 0
chr17:41515614|41515989 hsa-miR-1913 1 0 0
chr17:41515614|41515989 hsa-miR-3937 1 0 0
chr17:41515614|41515989 hsa-miR-4530 1 0 0
chr17:41515614|41515989 hsa-miR-3960 1 0 0
chr17:41515614|41515989 hsa-miR-10226 1 0 0
chr17:41515614|41515989 hsa-miR-4665-3p 1 0 0
chr17:41515614|41515989 hsa-miR-6836-3p 1 0 0
chr17:41515614|41515989 hsa-miR-1225-3p 1 0 0
chr17:41515614|41515989 hsa-miR-6820-5p 1 0 0
chr17:41515614|41515989 hsa-miR-3189-5p 1 0 0
chr17:41515614|41515989 hsa-miR-6849-3p 1 0 0
chr17:41515614|41515989 hsa-miR-6850-5p 1 0 0
chr17:41515614|41515989 hsa-miR-6882-3p 1 0 0
chr17:41515614|41515989 hsa-miR-4713-5p 1 0 0
chr17:41515614|41515989 hsa-miR-7113-3p 1 0 0
chr17:41515614|41515989 hsa-miR-4713-3p 1 0 0
chr17:41515614|41515989 hsa-miR-7111-3p 1 0 0
chr17:41515614|41515989 hsa-miR-7106-3p 1 0 0
chr17:41515614|41515989 hsa-miR-5088-3p 1 0 0
chr17:41515614|41515989 hsa-miR-6777-3p 1 0 0
chr17:41515614|41515989 hsa-miR-1292-3p 1 0 0
chr17:41515614|41515989 hsa-miR-6760-3p 1 0 0
chr17:41515614|41515989 hsa-miR-4763-3p 1 0 0
chr17:41515614|41515989 hsa-miR-5001-5p 1 0 0
chr17:41515614|41515989 hsa-miR-4685-3p 1 0 0
chr17:41515614|41515989 hsa-miR-3620-5p 1 0 0
chr17:41515614|41515989 hsa-miR-6756-3p 1 0 0
chr17:41515614|41515989 hsa-miR-6829-3p 1 0 0
chr17:41515614|41515989 hsa-miR-10400-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:41515614|41515989
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MHRHIRLERKPLRASREGALNGVQGTTS
Nucleotide Sequence ATGCATAGACACATCAGGCTAGAAAGGAAGCCACTGAGGGCAAGCAGGGAGGGGGCACTGAATGGAGTTCAGGGAACCACCTCTTGA
CircID chr17:41515614|41515989
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MGREWPYHAELGLQLDLQLLHRASQVCDLRLAGLDHFCVGGH
Nucleotide Sequence ATGGGGCGCGAGTGGCCGTACCATGCTGAGCTGGGACTGCAGCTCGATCTCCAGCTCCTGCATCGTGCGTCTCAGGTCTGTGATCTCCGTCTTGCTGGTCTGGATCATTTCTGTGTTGGAGGCCAC
CircID chr17:41515614|41515989
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MGWGASGRTMLSWDCSSISSSCIVRLRSVISVLLVWIISVLEA
Nucleotide Sequence CTGGGATGGGGCGCGAGTGGCCGTACCATGCTGAGCTGGGACTGCAGCTCGATCTCCAGCTCCTGCATCGTGCGTCTCAGGTCTGTGATCTCCGTCTTGCTGGTCTGGATCATTTCTGTGTTGGAGGCC
CircID chr17:41515614|41515989
ORF Type ORF4
Protein Length 81
Nucleotide Length 246
Protein Sequence MIQTSKTEITDLRRTMQELEIELQSQLSMVRPLAPHPSLSGGRSSHSSWLFKPWSSQAPSRGGSLNSIQCPLPACPQWLPF
Nucleotide Sequence ATGATCCAGACCAGCAAGACGGAGATCACAGACCTGAGACGCACGATGCAGGAGCTGGAGATCGAGCTGCAGTCCCAGCTCAGCATGGTACGGCCACTCGCGCCCCATCCCAGCCTCTCGGGTGGTAGAAGCTCCCACTCTTCCTGGCTATTTAAGCCTTGGAGTTCTCAAGCCCCCTCAAGAGGTGGTTCCCTGAACTCCATTCAGTGCCCCCTCCCTGCTTGCCCTCAGTGGCTTCCTTTCTAG
CircID chr17:41515614|41515989
ORF Type ORF5
Protein Length 33
Nucleotide Length 99
Protein Sequence MHLSLPQKAGLENSLAETECRYATQLQQIQGLI
Nucleotide Sequence ATGCATCTGTCACTCCCCCAGAAAGCTGGGCTGGAGAACTCACTGGCCGAGACAGAGTGCCGCTATGCCACGCAGCTGCAGCAGATCCAGGGGCTCATT
CircID chr17:41515614|41515989
ORF Type ORF6
Protein Length 47
Nucleotide Length 141
Protein Sequence MLALSGFLSSLMCLCICHSPRKLGWRTHWPRQSAAMPRSCSRSRGSL
Nucleotide Sequence CTGCTTGCCCTCAGTGGCTTCCTTTCTAGCCTGATGTGTCTATGCATCTGTCACTCCCCCAGAAAGCTGGGCTGGAGAACTCACTGGCCGAGACAGAGTGCCGCTATGCCACGCAGCTGCAGCAGATCCAGGGGCTCATTG
CircID chr17:41515614|41515989
ORF Type ORF7
Protein Length 30
Nucleotide Length 93
Protein Sequence MEFSSPLKRWFPELHSVPPPCLPSVASFLA
Nucleotide Sequence TTGGAGTTCTCAAGCCCCCTCAAGAGGTGGTTCCCTGAACTCCATTCAGTGCCCCCTCCCTGCTTGCCCTCAGTGGCTTCCTTTCTAGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab