CircRNA Information

General Information
circRNA Basic Information
CircID chr17:41754953|41755309
Strand -
CircType exon
Host Gene ENSG00000173801.15;
Algorism CIRI2;
Sequence TCCATATCTCCTCCCCATCTCCCCTGGACGGTCCCTGAACTTTTCAAGAGAAGTTTTGGATTTTGGGGGTTTGGGTCTCGAACCTGGGCCCTGGAGGCCCTGGGGGCTTAGGGCAGTTGGTCGGTGGAGTTCAGTGAGAAAATCAGACCCAGAGAAGGAACCAAAGCCCTTCCGGGCCCAGGCAGCTGGAGACAGGGAGGCTGGAGGTTTGGAGGGGCGTTGCTGGGGGAAAACAGAATGGGTACTTGAGTCTGAAGCTTTAGTGGCCAGGGCCACAGGGGCGGGGAGGGGGTGTCAGGCCCTGGACCCATGCCCAGGACAGAAAAGCAGGAGCAGAACACTATCCCAAGAAAGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:41754953|41755309 hsa-miR-22-5p 0 0 1
chr17:41754953|41755309 hsa-miR-22-3p 0 0 1
chr17:41754953|41755309 hsa-miR-26b-5p 0 0 1
chr17:41754953|41755309 hsa-miR-26b-3p 0 0 1
chr17:41754953|41755309 hsa-miR-320a-5p 0 0 1
chr17:41754953|41755309 hsa-miR-320a-3p 0 0 1
chr17:41754953|41755309 hsa-miR-370-5p 0 0 1
chr17:41754953|41755309 hsa-miR-370-3p 0 0 1
chr17:41754953|41755309 hsa-miR-328-5p 0 0 1
chr17:41754953|41755309 hsa-miR-328-3p 0 0 1
chr17:41754953|41755309 hsa-miR-326 0 0 1
chr17:41754953|41755309 hsa-miR-578 0 0 1
chr17:41754953|41755309 hsa-miR-588 0 1 1
chr17:41754953|41755309 hsa-miR-612 0 1 1
chr17:41754953|41755309 hsa-miR-635 0 0 1
chr17:41754953|41755309 hsa-miR-661 0 1 1
chr17:41754953|41755309 hsa-miR-659-5p 0 0 1
chr17:41754953|41755309 hsa-miR-659-3p 0 0 1
chr17:41754953|41755309 hsa-miR-660-5p 0 0 1
chr17:41754953|41755309 hsa-miR-660-3p 0 0 1
chr17:41754953|41755309 hsa-miR-1323 0 0 1
chr17:41754953|41755309 hsa-miR-766-5p 0 0 1
chr17:41754953|41755309 hsa-miR-766-3p 0 0 1
chr17:41754953|41755309 hsa-miR-765 0 0 1
chr17:41754953|41755309 hsa-miR-939-5p 0 0 1
chr17:41754953|41755309 hsa-miR-939-3p 0 0 1
chr17:41754953|41755309 hsa-miR-942-5p 0 0 1
chr17:41754953|41755309 hsa-miR-942-3p 0 0 1
chr17:41754953|41755309 hsa-miR-1229-5p 0 0 1
chr17:41754953|41755309 hsa-miR-1229-3p 0 0 1
chr17:41754953|41755309 hsa-miR-1237-5p 0 0 1
chr17:41754953|41755309 hsa-miR-1237-3p 0 0 1
chr17:41754953|41755309 hsa-miR-663b 0 1 1
chr17:41754953|41755309 hsa-miR-1291 0 1 1
chr17:41754953|41755309 hsa-miR-1297 0 0 1
chr17:41754953|41755309 hsa-miR-1248 0 0 1
chr17:41754953|41755309 hsa-miR-548o-3p 0 0 1
chr17:41754953|41755309 hsa-miR-548o 0 0 1
chr17:41754953|41755309 hsa-miR-296-5p 0 0 1
chr17:41754953|41755309 hsa-miR-193a-5p 0 0 1
chr17:41754953|41755309 hsa-miR-339-5p 0 1 1
chr17:41754953|41755309 hsa-miR-361-3p 0 1 1
chr17:41754953|41755309 hsa-miR-767-3p 0 0 1
chr17:41754953|41755309 hsa-miR-769-3p 1 0 1
chr17:41754953|41755309 hsa-miR-320b 0 0 1
chr17:41754953|41755309 hsa-miR-320c 0 0 1
chr17:41754953|41755309 hsa-miR-330-5p 1 1 1
chr17:41754953|41755309 hsa-miR-320d 0 0 1
chr17:41754953|41755309 hsa-miR-450b-3p 0 0 1
chr17:41754953|41755309 hsa-miR-1274a 0 0 1
chr17:41754953|41755309 hsa-miR-1274b 0 0 1
chr17:41754953|41755309 hsa-miR-1308 0 0 1
chr17:41754953|41755309 hsa-miR-9 0 0 1
chr17:41754953|41755309 hsa-miR-26a 0 0 1
chr17:41754953|41755309 hsa-miR-1285 0 0 1
chr17:41754953|41755309 hsa-miR-1254 0 0 1
chr17:41754953|41755309 hsa-miR-484 1 0 0
chr17:41754953|41755309 hsa-miR-1538 0 1 0
chr17:41754953|41755309 hsa-miR-4253 0 1 0
chr17:41754953|41755309 hsa-miR-4270 1 0 0
chr17:41754953|41755309 hsa-miR-3918 0 1 0
chr17:41754953|41755309 hsa-miR-3943 0 1 0
chr17:41754953|41755309 hsa-miR-4422 1 0 0
chr17:41754953|41755309 hsa-miR-4448 1 0 0
chr17:41754953|41755309 hsa-miR-4507 1 0 0
chr17:41754953|41755309 hsa-miR-4512 0 1 0
chr17:41754953|41755309 hsa-miR-4539 0 1 0
chr17:41754953|41755309 hsa-miR-4739 1 0 0
chr17:41754953|41755309 hsa-miR-4784 0 1 0
chr17:41754953|41755309 hsa-miR-5100 1 0 0
chr17:41754953|41755309 hsa-miR-6069 1 0 0
chr17:41754953|41755309 hsa-miR-6860 0 1 0
chr17:41754953|41755309 hsa-miR-12113 0 1 0
chr17:41754953|41755309 hsa-miR-12128 0 1 0
chr17:41754953|41755309 hsa-miR-211-3p 0 1 0
chr17:41754953|41755309 hsa-miR-6749-3p 1 0 0
chr17:41754953|41755309 hsa-miR-18a-3p 0 1 0
chr17:41754953|41755309 hsa-miR-6734-5p 1 0 0
chr17:41754953|41755309 hsa-miR-1273h-3p 1 0 0
chr17:41754953|41755309 hsa-miR-4726-3p 0 1 0
chr17:41754953|41755309 hsa-miR-7106-5p 1 0 0
chr17:41754953|41755309 hsa-miR-6825-5p 1 1 0
chr17:41754953|41755309 hsa-miR-6892-3p 0 1 0
chr17:41754953|41755309 hsa-miR-6757-5p 1 0 0
chr17:41754953|41755309 hsa-miR-6730-5p 0 1 0
chr17:41754953|41755309 hsa-miR-4474-3p 0 1 0
chr17:41754953|41755309 hsa-miR-3622b-5p 0 1 0
chr17:41754953|41755309 hsa-miR-874-3p 0 1 0
chr17:41754953|41755309 hsa-miR-6849-3p 0 1 0
chr17:41754953|41755309 hsa-miR-6868-3p 0 1 0
chr17:41754953|41755309 hsa-miR-6798-5p 1 0 0
chr17:41754953|41755309 hsa-miR-6772-3p 0 1 0
chr17:41754953|41755309 hsa-miR-7113-3p 1 1 0
chr17:41754953|41755309 hsa-miR-3679-3p 0 1 0
chr17:41754953|41755309 hsa-miR-1304-3p 0 1 0
chr17:41754953|41755309 hsa-miR-6824-5p 1 0 0
chr17:41754953|41755309 hsa-miR-146b-3p 0 1 0
chr17:41754953|41755309 hsa-miR-4640-3p 0 1 0
chr17:41754953|41755309 hsa-miR-6786-3p 1 1 0
chr17:41754953|41755309 hsa-miR-7160-3p 0 1 0
chr17:41754953|41755309 hsa-miR-3158-3p 0 1 0
chr17:41754953|41755309 hsa-miR-6730-3p 1 1 0
chr17:41754953|41755309 hsa-miR-6887-3p 0 1 0
chr17:41754953|41755309 hsa-miR-6778-3p 0 1 0
chr17:41754953|41755309 hsa-miR-519d-5p 0 1 0
chr17:41754953|41755309 hsa-miR-1296-5p 0 1 0
chr17:41754953|41755309 hsa-miR-4749-3p 0 1 0
chr17:41754953|41755309 hsa-miR-6859-3p 0 1 0
chr17:41754953|41755309 hsa-miR-4649-3p 1 0 0
chr17:41754953|41755309 hsa-miR-18b-3p 0 1 0
chr17:41754953|41755309 hsa-miR-6870-5p 1 1 0
chr17:41754953|41755309 hsa-miR-6726-5p 1 0 0
chr17:41754953|41755309 hsa-miR-6754-5p 1 0 0
chr17:41754953|41755309 hsa-miR-6763-5p 0 1 0
chr17:41754953|41755309 hsa-miR-4685-3p 1 0 0
chr17:41754953|41755309 hsa-miR-3620-5p 1 0 0
chr17:41754953|41755309 hsa-miR-4685-5p 1 1 0
chr17:41754953|41755309 hsa-miR-6795-5p 1 0 0
chr17:41754953|41755309 hsa-miR-6848-5p 1 0 0
chr17:41754953|41755309 hsa-miR-6883-5p 1 0 0
chr17:41754953|41755309 hsa-miR-6887-5p 1 0 0
chr17:41754953|41755309 hsa-miR-3187-5p 0 1 0
chr17:41754953|41755309 hsa-miR-4769-5p 1 0 0
chr17:41754953|41755309 hsa-miR-6731-5p 1 0 0
chr17:41754953|41755309 hsa-miR-5008-3p 1 0 0
chr17:41754953|41755309 hsa-miR-6773-5p 0 1 0
chr17:41754953|41755309 hsa-miR-6791-3p 1 1 0
chr17:41754953|41755309 hsa-miR-6724-5p 0 1 0
chr17:41754953|41755309 hsa-miR-6791-5p 0 1 0
chr17:41754953|41755309 hsa-miR-6792-3p 0 1 0
chr17:41754953|41755309 hsa-miR-10401-3p 1 0 0
chr17:41754953|41755309 hsa-miR-6837-5p 0 1 0
chr17:41754953|41755309 hsa-miR-6775-3p 0 1 0
chr17:41754953|41755309 hsa-miR-1234-3p 1 1 0
chr17:41754953|41755309 hsa-miR-6764-5p 0 1 0
chr17:41754953|41755309 hsa-miR-5699-3p 0 1 0
chr17:41754953|41755309 hsa-miR-3117-3p 1 0 0
chr17:41754953|41755309 hsa-miR-365a-3p 0 1 0
chr17:41754953|41755309 hsa-miR-365b-3p 0 1 0
chr17:41754953|41755309 hsa-miR-181b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:41754953|41755309
ORF Type ORF1
Protein Length 107
Nucleotide Length 321
Protein Sequence MNFSREVLDFGGLGLEPGPWRPWGLRAVGRWSSVRKSDPEKEPKPFRAQAAGDREAGGLEGRCWGKTEWVLESEALVARATGAGRGCQALDPCPGQKSRSRTLSQER
Nucleotide Sequence CTGAACTTTTCAAGAGAAGTTTTGGATTTTGGGGGTTTGGGTCTCGAACCTGGGCCCTGGAGGCCCTGGGGGCTTAGGGCAGTTGGTCGGTGGAGTTCAGTGAGAAAATCAGACCCAGAGAAGGAACCAAAGCCCTTCCGGGCCCAGGCAGCTGGAGACAGGGAGGCTGGAGGTTTGGAGGGGCGTTGCTGGGGGAAAACAGAATGGGTACTTGAGTCTGAAGCTTTAGTGGCCAGGGCCACAGGGGCGGGGAGGGGGTGTCAGGCCCTGGACCCATGCCCAGGACAGAAAAGCAGGAGCAGAACACTATCCCAAGAAAGA
CircID chr17:41754953|41755309
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence METGRLEVWRGVAGGKQNGYLSLKL
Nucleotide Sequence CTGGAGACAGGGAGGCTGGAGGTTTGGAGGGGCGTTGCTGGGGGAAAACAGAATGGGTACTTGAGTCTGAAGCTTTAG
CircID chr17:41754953|41755309
ORF Type ORF3
Protein Length 90
Nucleotide Length 270
Protein Sequence MATKASDSSTHSVFPQQRPSKPPASLSPAAWARKGFGSFSGSDFLTELHRPTALSPQGLQGPGSRPKPPKSKTSLEKFRDRPGEMGRRYG
Nucleotide Sequence CTGGCCACTAAAGCTTCAGACTCAAGTACCCATTCTGTTTTCCCCCAGCAACGCCCCTCCAAACCTCCAGCCTCCCTGTCTCCAGCTGCCTGGGCCCGGAAGGGCTTTGGTTCCTTCTCTGGGTCTGATTTTCTCACTGAACTCCACCGACCAACTGCCCTAAGCCCCCAGGGCCTCCAGGGCCCAGGTTCGAGACCCAAACCCCCAAAATCCAAAACTTCTCTTGAAAAGTTCAGGGACCGTCCAGGGGAGATGGGGAGGAGATATGGA
CircID chr17:41754953|41755309
ORF Type ORF4
Protein Length 69
Nucleotide Length 210
Protein Sequence MGMGPGPDTPSPPLWPWPLKLQTQVPILFSPSNAPPNLQPPCLQLPGPGRALVPSLGLIFSLNSTDQLP
Nucleotide Sequence CTGGGCATGGGTCCAGGGCCTGACACCCCCTCCCCGCCCCTGTGGCCCTGGCCACTAAAGCTTCAGACTCAAGTACCCATTCTGTTTTCCCCCAGCAACGCCCCTCCAAACCTCCAGCCTCCCTGTCTCCAGCTGCCTGGGCCCGGAAGGGCTTTGGTTCCTTCTCTGGGTCTGATTTTCTCACTGAACTCCACCGACCAACTGCCCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab