CircRNA Information

General Information
circRNA Basic Information
CircID chr17:41819214|41819599
Strand -
CircType exon
Host Gene ENSG00000141756.17;
Algorism CIRI2;
Sequence AGTGATCCCCCCACAGGCCTCGCTGGTCTTTCACGTCCTCCTGATTGACGTGCACAACCCGAAGGACGCTGTCCAGCTAGAGACGCTGGAGCTCCCCCCCGGCTGTGTCCGCAGAGCCGGGGCCGGGGACTTCATGCGCTACCACTACAATGGCTCCTTGATGGACGGCACCCTCTTCGATTCCAGGTCAGGAGGGTCTTGAGGTGGGAGGGCGGGGGCTGGGTGAAACGTGGACGAAGCTGGGGGTCACTCTGAGCTGCCTGGAAGGGGAGGGCCCCTTTGACTCCCTTCCTGGCCCTCCCGCCTTGTATTGCAGCTACTCCCGCAACCACACCTACAATACCTATATCGGGCAGGGTTACATCATCCCCGGGATGGACCAGGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:41819214|41819599 hsa-miR-22-5p 0 0 1
chr17:41819214|41819599 hsa-miR-22-3p 0 0 1
chr17:41819214|41819599 hsa-miR-381-5p 0 0 1
chr17:41819214|41819599 hsa-miR-381-3p 0 0 1
chr17:41819214|41819599 hsa-miR-619-5p 0 0 1
chr17:41819214|41819599 hsa-miR-619-3p 0 0 1
chr17:41819214|41819599 hsa-miR-624-5p 0 0 1
chr17:41819214|41819599 hsa-miR-624-3p 0 0 1
chr17:41819214|41819599 hsa-miR-631 0 0 1
chr17:41819214|41819599 hsa-miR-766-5p 0 0 1
chr17:41819214|41819599 hsa-miR-766-3p 0 0 1
chr17:41819214|41819599 hsa-miR-300 0 0 1
chr17:41819214|41819599 hsa-miR-760 0 0 1
chr17:41819214|41819599 hsa-miR-920 0 0 1
chr17:41819214|41819599 hsa-miR-939-5p 0 0 1
chr17:41819214|41819599 hsa-miR-939-3p 0 0 1
chr17:41819214|41819599 hsa-miR-1251-5p 0 0 1
chr17:41819214|41819599 hsa-miR-1251-3p 0 0 1
chr17:41819214|41819599 hsa-miR-140-5p 0 0 1
chr17:41819214|41819599 hsa-miR-491-5p 0 0 1
chr17:41819214|41819599 hsa-miR-532-3p 0 1 1
chr17:41819214|41819599 hsa-miR-542-5p 0 0 1
chr17:41819214|41819599 hsa-miR-331-5p 0 0 1
chr17:41819214|41819599 hsa-miR-361-3p 0 0 1
chr17:41819214|41819599 hsa-miR-1224-3p 0 1 1
chr17:41819214|41819599 hsa-miR-331-3p 0 1 1
chr17:41819214|41819599 hsa-miR-142-3p 0 0 1
chr17:41819214|41819599 hsa-miR-1260 0 0 1
chr17:41819214|41819599 hsa-miR-1280 0 0 1
chr17:41819214|41819599 hsa-miR-608 1 0 0
chr17:41819214|41819599 hsa-miR-638 1 1 0
chr17:41819214|41819599 hsa-miR-759 0 1 0
chr17:41819214|41819599 hsa-miR-940 1 0 0
chr17:41819214|41819599 hsa-miR-1183 1 0 0
chr17:41819214|41819599 hsa-miR-1260a 0 1 0
chr17:41819214|41819599 hsa-miR-1268a 1 0 0
chr17:41819214|41819599 hsa-miR-3147 1 0 0
chr17:41819214|41819599 hsa-miR-4270 0 1 0
chr17:41819214|41819599 hsa-miR-4290 0 1 0
chr17:41819214|41819599 hsa-miR-3661 0 1 0
chr17:41819214|41819599 hsa-miR-3943 1 1 0
chr17:41819214|41819599 hsa-miR-1268b 1 0 0
chr17:41819214|41819599 hsa-miR-4449 0 1 0
chr17:41819214|41819599 hsa-miR-4476 0 1 0
chr17:41819214|41819599 hsa-miR-4675 1 0 0
chr17:41819214|41819599 hsa-miR-4734 0 1 0
chr17:41819214|41819599 hsa-miR-4739 1 1 0
chr17:41819214|41819599 hsa-miR-5698 0 1 0
chr17:41819214|41819599 hsa-miR-6081 1 0 0
chr17:41819214|41819599 hsa-miR-6127 1 0 0
chr17:41819214|41819599 hsa-miR-6128 0 1 0
chr17:41819214|41819599 hsa-miR-12128 1 0 0
chr17:41819214|41819599 hsa-miR-4433b-3p 1 0 0
chr17:41819214|41819599 hsa-miR-6749-3p 0 1 0
chr17:41819214|41819599 hsa-miR-7-5p 0 1 0
chr17:41819214|41819599 hsa-miR-3194-3p 0 1 0
chr17:41819214|41819599 hsa-miR-6879-3p 0 1 0
chr17:41819214|41819599 hsa-miR-4665-3p 1 0 0
chr17:41819214|41819599 hsa-miR-6836-3p 1 0 0
chr17:41819214|41819599 hsa-miR-6894-5p 1 0 0
chr17:41819214|41819599 hsa-miR-210-5p 0 1 0
chr17:41819214|41819599 hsa-miR-181c-3p 1 0 0
chr17:41819214|41819599 hsa-miR-6515-5p 0 1 0
chr17:41819214|41819599 hsa-miR-4722-5p 1 0 0
chr17:41819214|41819599 hsa-miR-4655-3p 1 0 0
chr17:41819214|41819599 hsa-miR-6827-5p 1 0 0
chr17:41819214|41819599 hsa-miR-6798-5p 1 0 0
chr17:41819214|41819599 hsa-miR-6735-3p 0 1 0
chr17:41819214|41819599 hsa-miR-6858-3p 1 1 0
chr17:41819214|41819599 hsa-miR-4713-5p 0 1 0
chr17:41819214|41819599 hsa-miR-6786-5p 1 0 0
chr17:41819214|41819599 hsa-miR-4763-5p 1 0 0
chr17:41819214|41819599 hsa-miR-6763-3p 0 1 0
chr17:41819214|41819599 hsa-miR-7108-3p 0 1 0
chr17:41819214|41819599 hsa-miR-2277-3p 0 1 0
chr17:41819214|41819599 hsa-miR-4640-5p 0 1 0
chr17:41819214|41819599 hsa-miR-6803-3p 0 1 0
chr17:41819214|41819599 hsa-miR-6771-5p 1 1 0
chr17:41819214|41819599 hsa-miR-3202 0 1 0
chr17:41819214|41819599 hsa-miR-4638-3p 0 1 0
chr17:41819214|41819599 hsa-miR-149-3p 0 1 0
chr17:41819214|41819599 hsa-miR-6736-3p 0 1 0
chr17:41819214|41819599 hsa-miR-941 0 1 0
chr17:41819214|41819599 hsa-miR-4640-3p 1 0 0
chr17:41819214|41819599 hsa-miR-339-5p 1 0 0
chr17:41819214|41819599 hsa-miR-6895-5p 0 1 0
chr17:41819214|41819599 hsa-miR-1225-5p 1 0 0
chr17:41819214|41819599 hsa-miR-4707-5p 0 1 0
chr17:41819214|41819599 hsa-miR-6752-3p 0 1 0
chr17:41819214|41819599 hsa-miR-4671-3p 0 1 0
chr17:41819214|41819599 hsa-miR-6859-3p 1 1 0
chr17:41819214|41819599 hsa-miR-1249-3p 1 0 0
chr17:41819214|41819599 hsa-miR-6732-3p 0 1 0
chr17:41819214|41819599 hsa-miR-3156-3p 0 1 0
chr17:41819214|41819599 hsa-miR-1233-5p 1 0 0
chr17:41819214|41819599 hsa-miR-6769b-5p 1 0 0
chr17:41819214|41819599 hsa-miR-6778-5p 1 1 0
chr17:41819214|41819599 hsa-miR-6787-5p 1 0 0
chr17:41819214|41819599 hsa-miR-6775-5p 1 0 0
chr17:41819214|41819599 hsa-miR-5001-5p 1 0 0
chr17:41819214|41819599 hsa-miR-6726-5p 0 1 0
chr17:41819214|41819599 hsa-miR-6752-5p 1 0 0
chr17:41819214|41819599 hsa-miR-6756-5p 1 0 0
chr17:41819214|41819599 hsa-miR-6803-5p 1 0 0
chr17:41819214|41819599 hsa-miR-10401-5p 1 0 0
chr17:41819214|41819599 hsa-miR-1249-5p 0 1 0
chr17:41819214|41819599 hsa-miR-6722-3p 1 0 0
chr17:41819214|41819599 hsa-miR-3127-3p 0 1 0
chr17:41819214|41819599 hsa-miR-6754-3p 0 1 0
chr17:41819214|41819599 hsa-miR-4728-5p 0 1 0
chr17:41819214|41819599 hsa-miR-328-5p 1 1 0
chr17:41819214|41819599 hsa-miR-4632-5p 1 0 0
chr17:41819214|41819599 hsa-miR-4726-5p 0 1 0
chr17:41819214|41819599 hsa-miR-6794-5p 1 0 0
chr17:41819214|41819599 hsa-miR-6795-5p 0 1 0
chr17:41819214|41819599 hsa-miR-6883-5p 0 1 0
chr17:41819214|41819599 hsa-miR-6887-5p 0 1 0
chr17:41819214|41819599 hsa-miR-3187-5p 1 0 0
chr17:41819214|41819599 hsa-miR-5586-3p 0 1 0
chr17:41819214|41819599 hsa-miR-4665-5p 1 0 0
chr17:41819214|41819599 hsa-miR-3173-3p 1 0 0
chr17:41819214|41819599 hsa-miR-6876-5p 0 1 0
chr17:41819214|41819599 hsa-miR-4472 0 1 0
chr17:41819214|41819599 hsa-miR-6785-5p 0 1 0
chr17:41819214|41819599 hsa-miR-6756-3p 0 1 0
chr17:41819214|41819599 hsa-miR-6792-3p 1 0 0
chr17:41819214|41819599 hsa-miR-6862-3p 1 1 0
chr17:41819214|41819599 hsa-miR-10401-3p 1 1 0
chr17:41819214|41819599 hsa-miR-6810-3p 1 0 0
chr17:41819214|41819599 hsa-miR-10392-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:41819214|41819599
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MCPQSRGRGLHALPLQWLLDGRHPLRFQVRRVLRWEGGGWVKRGRSWGSL
Nucleotide Sequence CTGTGTCCGCAGAGCCGGGGCCGGGGACTTCATGCGCTACCACTACAATGGCTCCTTGATGGACGGCACCCTCTTCGATTCCAGGTCAGGAGGGTCTTGAGGTGGGAGGGCGGGGGCTGGGTGAAACGTGGACGAAGCTGGGGGTCACTCTGA
CircID chr17:41819214|41819599
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MTPFLALPPCIAATPATTPTIPISGRVTSSPGWTR
Nucleotide Sequence TTGACTCCCTTCCTGGCCCTCCCGCCTTGTATTGCAGCTACTCCCGCAACCACACCTACAATACCTATATCGGGCAGGGTTACATCATCCCCGGGATGGACCAGG
CircID chr17:41819214|41819599
ORF Type ORF3
Protein Length 59
Nucleotide Length 180
Protein Sequence MVFHVLLIDVHNPKDAVQLETLELPPGCVRRAGAGDFMRYHYNGSLMDGTLFDSRSGGS
Nucleotide Sequence CTGGTCTTTCACGTCCTCCTGATTGACGTGCACAACCCGAAGGACGCTGTCCAGCTAGAGACGCTGGAGCTCCCCCCCGGCTGTGTCCGCAGAGCCGGGGCCGGGGACTTCATGCGCTACCACTACAATGGCTCCTTGATGGACGGCACCCTCTTCGATTCCAGGTCAGGAGGGTCTTGA
CircID chr17:41819214|41819599
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MQLLPQPHLQYLYRAGLHHPRDGPG
Nucleotide Sequence TTGCAGCTACTCCCGCAACCACACCTACAATACCTATATCGGGCAGGGTTACATCATCCCCGGGATGGACCAGGG
CircID chr17:41819214|41819599
ORF Type ORF5
Protein Length 56
Nucleotide Length 168
Protein Sequence MGETWTKLGVTLSCLEGEGPFDSLPGPPALYCSYSRNHTYNTYIGQGYIIPGMDQG
Nucleotide Sequence CTGGGTGAAACGTGGACGAAGCTGGGGGTCACTCTGAGCTGCCTGGAAGGGGAGGGCCCCTTTGACTCCCTTCCTGGCCCTCCCGCCTTGTATTGCAGCTACTCCCGCAACCACACCTACAATACCTATATCGGGCAGGGTTACATCATCCCCGGGATGGACCAGGGG
CircID chr17:41819214|41819599
ORF Type ORF6
Protein Length 83
Nucleotide Length 252
Protein Sequence MVHPGDDVTLPDIGIVGVVAGVAAIQGGRARKGVKGALPFQAAQSDPQLRPRFTQPPPSHLKTLLTWNRRGCRPSRSHCSGSA
Nucleotide Sequence CTGGTCCATCCCGGGGATGATGTAACCCTGCCCGATATAGGTATTGTAGGTGTGGTTGCGGGAGTAGCTGCAATACAAGGCGGGAGGGCCAGGAAGGGAGTCAAAGGGGCCCTCCCCTTCCAGGCAGCTCAGAGTGACCCCCAGCTTCGTCCACGTTTCACCCAGCCCCCGCCCTCCCACCTCAAGACCCTCCTGACCTGGAATCGAAGAGGGTGCCGTCCATCAAGGAGCCATTGTAGTGGTAGCGCATGA
CircID chr17:41819214|41819599
ORF Type ORF7
Protein Length 42
Nucleotide Length 129
Protein Sequence MQYKAGGPGRESKGPSPSRQLRVTPSFVHVSPSPRPPTSRPS
Nucleotide Sequence CTGCAATACAAGGCGGGAGGGCCAGGAAGGGAGTCAAAGGGGCCCTCCCCTTCCAGGCAGCTCAGAGTGACCCCCAGCTTCGTCCACGTTTCACCCAGCCCCCGCCCTCCCACCTCAAGACCCTCCTGA
CircID chr17:41819214|41819599
ORF Type ORF8
Protein Length 25
Nucleotide Length 75
Protein Sequence MDSVLRVVHVNQEDVKDQRGLWGDH
Nucleotide Sequence CTGGACAGCGTCCTTCGGGTTGTGCACGTCAATCAGGAGGACGTGAAAGACCAGCGAGGCCTGTGGGGGGATCAC
CircID chr17:41819214|41819599
ORF Type ORF9
Protein Length 34
Nucleotide Length 105
Protein Sequence MKSPAPALRTQPGGSSSVSSWTASFGLCTSIRRT
Nucleotide Sequence ATGAAGTCCCCGGCCCCGGCTCTGCGGACACAGCCGGGGGGGAGCTCCAGCGTCTCTAGCTGGACAGCGTCCTTCGGGTTGTGCACGTCAATCAGGAGGACGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab