CircRNA Information

General Information
circRNA Basic Information
CircID chr17:42119389|42119616
Strand +
CircType exon
Host Gene ENSG00000108773.9;
Algorism CIRI2;
Sequence TGGAAGCTTGAGACACCTGCCCAGTTTCGGCAGAGGTCTCAGGCTGAGGACGTGGCTACCTACAAGGTCAATTACACCAGGTAGGCCCAGCCAGGGGCAGCTTCGGGGGAGGCTTGCAGGCCCAGCCTGGGTTCAGTGGTTTCCGCCCTCACCTGTCTCCCCCTCGACCCCCTACTCCAGATGGCTCTGTTACTGCCACGTGCCCCAGAGCTGTGATAGCCTCCCCCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:42119389|42119616 hsa-miR-22-5p 0 0 1
chr17:42119389|42119616 hsa-miR-22-3p 0 0 1
chr17:42119389|42119616 hsa-miR-192-5p 0 0 1
chr17:42119389|42119616 hsa-miR-192-3p 0 0 1
chr17:42119389|42119616 hsa-miR-34a-5p 0 0 1
chr17:42119389|42119616 hsa-miR-34a-3p 0 0 1
chr17:42119389|42119616 hsa-miR-215-5p 0 0 1
chr17:42119389|42119616 hsa-miR-215-3p 0 0 1
chr17:42119389|42119616 hsa-miR-326 0 0 1
chr17:42119389|42119616 hsa-miR-196b-5p 0 0 1
chr17:42119389|42119616 hsa-miR-196b-3p 0 0 1
chr17:42119389|42119616 hsa-miR-449a 0 0 1
chr17:42119389|42119616 hsa-miR-552-5p 0 0 1
chr17:42119389|42119616 hsa-miR-552-3p 0 0 1
chr17:42119389|42119616 hsa-miR-612 0 1 1
chr17:42119389|42119616 hsa-miR-619-5p 0 0 1
chr17:42119389|42119616 hsa-miR-619-3p 0 0 1
chr17:42119389|42119616 hsa-miR-637 0 0 1
chr17:42119389|42119616 hsa-miR-449b-5p 0 0 1
chr17:42119389|42119616 hsa-miR-449b-3p 0 0 1
chr17:42119389|42119616 hsa-miR-802 0 1 1
chr17:42119389|42119616 hsa-miR-513c-5p 0 0 1
chr17:42119389|42119616 hsa-miR-513c-3p 0 0 1
chr17:42119389|42119616 hsa-miR-125a-3p 0 1 1
chr17:42119389|42119616 hsa-miR-769-5p 0 1 1
chr17:42119389|42119616 hsa-miR-486-3p 0 0 1
chr17:42119389|42119616 hsa-miR-331-3p 0 1 1
chr17:42119389|42119616 hsa-miR-324-3p 1 0 1
chr17:42119389|42119616 hsa-miR-330-5p 0 1 1
chr17:42119389|42119616 hsa-miR-34c-5p 0 0 1
chr17:42119389|42119616 hsa-miR-1285 0 0 1
chr17:42119389|42119616 hsa-miR-516b 0 0 1
chr17:42119389|42119616 hsa-miR-196a 0 0 1
chr17:42119389|42119616 hsa-miR-194 0 0 1
chr17:42119389|42119616 hsa-miR-650 1 0 0
chr17:42119389|42119616 hsa-miR-765 1 0 0
chr17:42119389|42119616 hsa-miR-1293 1 0 0
chr17:42119389|42119616 hsa-miR-1275 1 0 0
chr17:42119389|42119616 hsa-miR-3132 1 0 0
chr17:42119389|42119616 hsa-miR-3154 1 0 0
chr17:42119389|42119616 hsa-miR-3196 1 0 0
chr17:42119389|42119616 hsa-miR-4298 1 0 0
chr17:42119389|42119616 hsa-miR-4324 0 1 0
chr17:42119389|42119616 hsa-miR-4271 1 0 0
chr17:42119389|42119616 hsa-miR-3621 1 0 0
chr17:42119389|42119616 hsa-miR-1268b 1 0 0
chr17:42119389|42119616 hsa-miR-4505 0 1 0
chr17:42119389|42119616 hsa-miR-4516 1 0 0
chr17:42119389|42119616 hsa-miR-4525 1 0 0
chr17:42119389|42119616 hsa-miR-378i 1 0 0
chr17:42119389|42119616 hsa-miR-4539 0 1 0
chr17:42119389|42119616 hsa-miR-4656 1 0 0
chr17:42119389|42119616 hsa-miR-4660 0 1 0
chr17:42119389|42119616 hsa-miR-4688 1 0 0
chr17:42119389|42119616 hsa-miR-4706 1 0 0
chr17:42119389|42119616 hsa-miR-4710 0 1 0
chr17:42119389|42119616 hsa-miR-5194 1 0 0
chr17:42119389|42119616 hsa-miR-5698 1 1 0
chr17:42119389|42119616 hsa-miR-5787 0 1 0
chr17:42119389|42119616 hsa-miR-6068 0 1 0
chr17:42119389|42119616 hsa-miR-6133 1 0 0
chr17:42119389|42119616 hsa-miR-6860 0 1 0
chr17:42119389|42119616 hsa-miR-7704 1 1 0
chr17:42119389|42119616 hsa-miR-7978 0 1 0
chr17:42119389|42119616 hsa-miR-8085 1 0 0
chr17:42119389|42119616 hsa-miR-12114 1 0 0
chr17:42119389|42119616 hsa-miR-4433b-3p 1 0 0
chr17:42119389|42119616 hsa-miR-6734-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6765-5p 1 0 0
chr17:42119389|42119616 hsa-miR-671-5p 1 1 0
chr17:42119389|42119616 hsa-miR-3150a-3p 1 0 0
chr17:42119389|42119616 hsa-miR-6825-5p 1 0 0
chr17:42119389|42119616 hsa-miR-25-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6799-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6510-5p 1 0 0
chr17:42119389|42119616 hsa-miR-139-3p 1 0 0
chr17:42119389|42119616 hsa-miR-5187-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6089 1 0 0
chr17:42119389|42119616 hsa-miR-6880-5p 1 0 0
chr17:42119389|42119616 hsa-miR-4695-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6890-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6727-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6842-3p 0 1 0
chr17:42119389|42119616 hsa-miR-181a-2-3p 0 1 0
chr17:42119389|42119616 hsa-miR-197-5p 1 0 0
chr17:42119389|42119616 hsa-miR-432-5p 1 0 0
chr17:42119389|42119616 hsa-miR-7845-5p 1 0 0
chr17:42119389|42119616 hsa-miR-3180-3p 1 0 0
chr17:42119389|42119616 hsa-miR-6796-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6732-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6805-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6827-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6798-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6881-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6782-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6735-3p 0 1 0
chr17:42119389|42119616 hsa-miR-7109-3p 0 1 0
chr17:42119389|42119616 hsa-miR-6786-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6835-5p 1 0 0
chr17:42119389|42119616 hsa-miR-7109-5p 1 0 0
chr17:42119389|42119616 hsa-miR-1226-5p 0 1 0
chr17:42119389|42119616 hsa-miR-4738-3p 0 1 0
chr17:42119389|42119616 hsa-miR-1229-5p 1 1 0
chr17:42119389|42119616 hsa-miR-6771-5p 1 0 0
chr17:42119389|42119616 hsa-miR-149-3p 1 0 0
chr17:42119389|42119616 hsa-miR-6824-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6789-5p 1 0 0
chr17:42119389|42119616 hsa-miR-3162-5p 1 0 0
chr17:42119389|42119616 hsa-miR-5010-5p 1 0 0
chr17:42119389|42119616 hsa-miR-423-5p 1 0 0
chr17:42119389|42119616 hsa-miR-4724-5p 0 1 0
chr17:42119389|42119616 hsa-miR-1225-5p 1 0 0
chr17:42119389|42119616 hsa-miR-1296-3p 1 0 0
chr17:42119389|42119616 hsa-miR-3184-3p 0 1 0
chr17:42119389|42119616 hsa-miR-1207-5p 1 0 0
chr17:42119389|42119616 hsa-miR-1233-5p 1 0 0
chr17:42119389|42119616 hsa-miR-1273h-5p 1 0 0
chr17:42119389|42119616 hsa-miR-4763-3p 1 0 0
chr17:42119389|42119616 hsa-miR-6778-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6787-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6816-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6870-5p 1 1 0
chr17:42119389|42119616 hsa-miR-6893-5p 1 1 0
chr17:42119389|42119616 hsa-miR-1343-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6743-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6752-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6756-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6842-5p 1 0 0
chr17:42119389|42119616 hsa-miR-7110-5p 1 0 0
chr17:42119389|42119616 hsa-miR-11181-3p 1 0 0
chr17:42119389|42119616 hsa-miR-1249-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6763-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6808-5p 1 0 0
chr17:42119389|42119616 hsa-miR-7111-5p 1 1 0
chr17:42119389|42119616 hsa-miR-4728-5p 1 0 0
chr17:42119389|42119616 hsa-miR-5196-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6780b-5p 1 0 0
chr17:42119389|42119616 hsa-miR-328-5p 1 0 0
chr17:42119389|42119616 hsa-miR-4649-5p 1 0 0
chr17:42119389|42119616 hsa-miR-4725-3p 1 0 0
chr17:42119389|42119616 hsa-miR-4745-5p 1 0 0
chr17:42119389|42119616 hsa-miR-4749-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6729-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6738-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6794-5p 1 1 0
chr17:42119389|42119616 hsa-miR-6795-5p 1 1 0
chr17:42119389|42119616 hsa-miR-6846-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6848-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6858-5p 1 0 0
chr17:42119389|42119616 hsa-miR-6887-5p 1 1 0
chr17:42119389|42119616 hsa-miR-3187-5p 0 1 0
chr17:42119389|42119616 hsa-miR-4723-5p 1 1 0
chr17:42119389|42119616 hsa-miR-6885-5p 1 0 0
chr17:42119389|42119616 hsa-miR-939-5p 1 0 0
chr17:42119389|42119616 hsa-miR-4758-5p 1 0 0
chr17:42119389|42119616 hsa-miR-3085-5p 1 0 0
chr17:42119389|42119616 hsa-miR-3198 1 0 0
chr17:42119389|42119616 hsa-miR-6731-5p 1 0 0
chr17:42119389|42119616 hsa-miR-1199-5p 0 1 0
chr17:42119389|42119616 hsa-miR-1914-3p 1 0 0
chr17:42119389|42119616 hsa-miR-4665-5p 1 0 0
chr17:42119389|42119616 hsa-miR-4472 1 0 0
chr17:42119389|42119616 hsa-miR-4716-3p 1 0 0
chr17:42119389|42119616 hsa-miR-6791-5p 1 0 0
chr17:42119389|42119616 hsa-miR-4756-5p 1 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:42119389|42119616
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MGSVVSALTCLPLDPLLQMALLLPRAPEL
Nucleotide Sequence CTGGGTTCAGTGGTTTCCGCCCTCACCTGTCTCCCCCTCGACCCCCTACTCCAGATGGCTCTGTTACTGCCACGTGCCCCAGAGCTGTGA
CircID chr17:42119389|42119616
ORF Type ORF2
Protein Length 73
Nucleotide Length 219
Protein Sequence MRHLPSFGRGLRLRTWLPTRSITPGRPSQGQLRGRLAGPAWVQWFPPSPVSPSTPYSRWLCYCHVPQSCDSLP
Nucleotide Sequence TTGAGACACCTGCCCAGTTTCGGCAGAGGTCTCAGGCTGAGGACGTGGCTACCTACAAGGTCAATTACACCAGGTAGGCCCAGCCAGGGGCAGCTTCGGGGGAGGCTTGCAGGCCCAGCCTGGGTTCAGTGGTTTCCGCCCTCACCTGTCTCCCCCTCGACCCCCTACTCCAGATGGCTCTGTTACTGCCACGTGCCCCAGAGCTGTGATAGCCTCCCC
CircID chr17:42119389|42119616
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MQAQPGFSGFRPHLSPPRPPTPDGSVTATCPRAVIASP
Nucleotide Sequence TTGCAGGCCCAGCCTGGGTTCAGTGGTTTCCGCCCTCACCTGTCTCCCCCTCGACCCCCTACTCCAGATGGCTCTGTTACTGCCACGTGCCCCAGAGCTGTGATAGCCTCCCCC
CircID chr17:42119389|42119616
ORF Type ORF4
Protein Length 30
Nucleotide Length 90
Protein Sequence MGLPGVIDLVGSHVLSLRPLPKLGRCLKLP
Nucleotide Sequence CTGGGCCTACCTGGTGTAATTGACCTTGTAGGTAGCCACGTCCTCAGCCTGAGACCTCTGCCGAAACTGGGCAGGTGTCTCAAGCTTCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab