CircRNA Information

General Information
circRNA Basic Information
CircID chr17:42190710|42191106
Strand -
CircType exon
Host Gene ENSG00000167925.14;
Algorism CIRI2;
Sequence AGGTCTTCACCAATATCTTCCCCTCGCACACTCAGGGTCTGGTCCAGCCTGAAGAGGAGGAAGGGAGAGGCAGTGGAGCCCAGGACACAAGGATGGCCCTTCAGCTCCCCGGGGTCACCTACCTGCAGATGAACCTGACGACTGGACACTGATTGTAGGCACCAACCACTCGCACCACATCACCCAGGCGGCACCTGATGGGGTGCAAGTGGGAGTGAGGTCGGGCCCAAGGTCTTCTGAGCTCATGCCCCAGGCCCCCAGCACGGTCCCATAGGGCCCCAGGTAGCAGGGGCTGTGCAGCTGATCACCTGGTGAGGCTGGCGCGGTCCGTCAGCACCAGCTCATACTCCTTGCCCTGCTGGGCCTCGGCCAAAAGGAGGGTGGAGGCAGCTTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:42190710|42191106 hsa-miR-22-5p 0 0 1
chr17:42190710|42191106 hsa-miR-22-3p 0 0 1
chr17:42190710|42191106 hsa-miR-198 0 0 1
chr17:42190710|42191106 hsa-miR-214-5p 0 0 1
chr17:42190710|42191106 hsa-miR-214-3p 0 0 1
chr17:42190710|42191106 hsa-miR-383-5p 0 0 1
chr17:42190710|42191106 hsa-miR-383-3p 0 0 1
chr17:42190710|42191106 hsa-miR-484 0 0 1
chr17:42190710|42191106 hsa-miR-504-5p 0 0 1
chr17:42190710|42191106 hsa-miR-504-3p 0 0 1
chr17:42190710|42191106 hsa-miR-558 0 0 1
chr17:42190710|42191106 hsa-miR-581 0 1 1
chr17:42190710|42191106 hsa-miR-592 0 0 1
chr17:42190710|42191106 hsa-miR-599 0 0 1
chr17:42190710|42191106 hsa-miR-619-5p 0 0 1
chr17:42190710|42191106 hsa-miR-619-3p 0 0 1
chr17:42190710|42191106 hsa-miR-635 0 0 1
chr17:42190710|42191106 hsa-miR-637 1 1 1
chr17:42190710|42191106 hsa-miR-648 0 1 1
chr17:42190710|42191106 hsa-miR-661 1 1 1
chr17:42190710|42191106 hsa-miR-657 0 0 1
chr17:42190710|42191106 hsa-miR-675-5p 0 0 1
chr17:42190710|42191106 hsa-miR-675-3p 0 0 1
chr17:42190710|42191106 hsa-miR-920 0 0 1
chr17:42190710|42191106 hsa-miR-939-5p 0 0 1
chr17:42190710|42191106 hsa-miR-939-3p 0 0 1
chr17:42190710|42191106 hsa-miR-1226-5p 0 0 1
chr17:42190710|42191106 hsa-miR-1226-3p 0 0 1
chr17:42190710|42191106 hsa-miR-1205 0 0 1
chr17:42190710|42191106 hsa-miR-1262 0 0 1
chr17:42190710|42191106 hsa-miR-140-5p 0 0 1
chr17:42190710|42191106 hsa-miR-125a-3p 0 0 1
chr17:42190710|42191106 hsa-miR-296-5p 0 0 1
chr17:42190710|42191106 hsa-miR-486-3p 1 0 1
chr17:42190710|42191106 hsa-miR-532-3p 0 0 1
chr17:42190710|42191106 hsa-miR-1184 0 0 1
chr17:42190710|42191106 hsa-miR-574-5p 0 1 1
chr17:42190710|42191106 hsa-miR-1207-3p 0 0 1
chr17:42190710|42191106 hsa-miR-556-5p 0 0 1
chr17:42190710|42191106 hsa-miR-628-5p 0 0 1
chr17:42190710|42191106 hsa-miR-125a-5p 0 0 1
chr17:42190710|42191106 hsa-miR-483-3p 0 0 1
chr17:42190710|42191106 hsa-miR-362-5p 0 1 1
chr17:42190710|42191106 hsa-miR-125b 0 0 1
chr17:42190710|42191106 hsa-miR-138 0 0 1
chr17:42190710|42191106 hsa-miR-326 1 0 0
chr17:42190710|42191106 hsa-miR-638 1 0 0
chr17:42190710|42191106 hsa-miR-762 1 1 0
chr17:42190710|42191106 hsa-miR-761 0 1 0
chr17:42190710|42191106 hsa-miR-1183 1 0 0
chr17:42190710|42191106 hsa-miR-2861 0 1 0
chr17:42190710|42191106 hsa-miR-4300 0 1 0
chr17:42190710|42191106 hsa-miR-4271 0 1 0
chr17:42190710|42191106 hsa-miR-3652 1 0 0
chr17:42190710|42191106 hsa-miR-4487 0 1 0
chr17:42190710|42191106 hsa-miR-4505 1 0 0
chr17:42190710|42191106 hsa-miR-4512 1 0 0
chr17:42190710|42191106 hsa-miR-4530 0 1 0
chr17:42190710|42191106 hsa-miR-4656 1 0 0
chr17:42190710|42191106 hsa-miR-4658 0 1 0
chr17:42190710|42191106 hsa-miR-4706 1 0 0
chr17:42190710|42191106 hsa-miR-5787 1 0 0
chr17:42190710|42191106 hsa-miR-6090 1 0 0
chr17:42190710|42191106 hsa-miR-6132 0 1 0
chr17:42190710|42191106 hsa-miR-8089 1 0 0
chr17:42190710|42191106 hsa-miR-138-5p 0 1 0
chr17:42190710|42191106 hsa-miR-122-5p 0 1 0
chr17:42190710|42191106 hsa-miR-6734-5p 0 1 0
chr17:42190710|42191106 hsa-miR-4731-5p 1 1 0
chr17:42190710|42191106 hsa-miR-6836-3p 1 1 0
chr17:42190710|42191106 hsa-miR-6861-5p 1 0 0
chr17:42190710|42191106 hsa-miR-6822-3p 1 1 0
chr17:42190710|42191106 hsa-miR-6510-5p 0 1 0
chr17:42190710|42191106 hsa-miR-7851-3p 0 1 0
chr17:42190710|42191106 hsa-miR-6089 1 0 0
chr17:42190710|42191106 hsa-miR-6867-5p 0 1 0
chr17:42190710|42191106 hsa-miR-7160-5p 1 0 0
chr17:42190710|42191106 hsa-miR-4655-5p 1 0 0
chr17:42190710|42191106 hsa-miR-3189-5p 1 1 0
chr17:42190710|42191106 hsa-miR-6776-5p 0 1 0
chr17:42190710|42191106 hsa-miR-6873-3p 0 1 0
chr17:42190710|42191106 hsa-miR-7110-3p 0 1 0
chr17:42190710|42191106 hsa-miR-3151-5p 0 1 0
chr17:42190710|42191106 hsa-miR-877-3p 0 1 0
chr17:42190710|42191106 hsa-miR-6827-5p 1 0 0
chr17:42190710|42191106 hsa-miR-6881-5p 1 0 0
chr17:42190710|42191106 hsa-miR-3194-5p 0 1 0
chr17:42190710|42191106 hsa-miR-5008-5p 0 1 0
chr17:42190710|42191106 hsa-miR-6882-3p 1 1 0
chr17:42190710|42191106 hsa-miR-1343-3p 1 1 0
chr17:42190710|42191106 hsa-miR-6852-5p 0 1 0
chr17:42190710|42191106 hsa-miR-3944-3p 1 0 0
chr17:42190710|42191106 hsa-miR-4640-5p 1 0 0
chr17:42190710|42191106 hsa-miR-3667-3p 0 1 0
chr17:42190710|42191106 hsa-miR-4690-5p 1 0 0
chr17:42190710|42191106 hsa-miR-6749-5p 1 0 0
chr17:42190710|42191106 hsa-miR-4667-3p 0 1 0
chr17:42190710|42191106 hsa-miR-4446-3p 1 0 0
chr17:42190710|42191106 hsa-miR-6824-5p 1 0 0
chr17:42190710|42191106 hsa-miR-6800-5p 0 1 0
chr17:42190710|42191106 hsa-miR-6877-5p 1 0 0
chr17:42190710|42191106 hsa-miR-3189-3p 0 1 0
chr17:42190710|42191106 hsa-miR-7112-5p 1 0 0
chr17:42190710|42191106 hsa-miR-6813-3p 0 1 0
chr17:42190710|42191106 hsa-miR-4778-3p 0 1 0
chr17:42190710|42191106 hsa-miR-6837-3p 0 1 0
chr17:42190710|42191106 hsa-miR-6865-3p 0 1 0
chr17:42190710|42191106 hsa-miR-6856-3p 0 1 0
chr17:42190710|42191106 hsa-miR-5088-3p 0 1 0
chr17:42190710|42191106 hsa-miR-670-5p 0 1 0
chr17:42190710|42191106 hsa-miR-5587-3p 0 1 0
chr17:42190710|42191106 hsa-miR-6733-3p 0 1 0
chr17:42190710|42191106 hsa-miR-6890-3p 0 1 0
chr17:42190710|42191106 hsa-miR-6509-3p 0 1 0
chr17:42190710|42191106 hsa-miR-3156-3p 0 1 0
chr17:42190710|42191106 hsa-miR-550b-3p 0 1 0
chr17:42190710|42191106 hsa-miR-1207-5p 1 0 0
chr17:42190710|42191106 hsa-miR-4763-3p 1 0 0
chr17:42190710|42191106 hsa-miR-6775-5p 1 1 0
chr17:42190710|42191106 hsa-miR-1343-5p 1 0 0
chr17:42190710|42191106 hsa-miR-5001-5p 1 0 0
chr17:42190710|42191106 hsa-miR-6726-5p 1 1 0
chr17:42190710|42191106 hsa-miR-6803-5p 1 1 0
chr17:42190710|42191106 hsa-miR-6815-5p 1 1 0
chr17:42190710|42191106 hsa-miR-6879-5p 0 1 0
chr17:42190710|42191106 hsa-miR-4685-3p 0 1 0
chr17:42190710|42191106 hsa-miR-3620-5p 1 0 0
chr17:42190710|42191106 hsa-miR-6780b-5p 0 1 0
chr17:42190710|42191106 hsa-miR-6862-5p 1 1 0
chr17:42190710|42191106 hsa-miR-10396b-5p 1 0 0
chr17:42190710|42191106 hsa-miR-1909-3p 1 0 0
chr17:42190710|42191106 hsa-miR-328-5p 1 1 0
chr17:42190710|42191106 hsa-miR-4632-5p 1 0 0
chr17:42190710|42191106 hsa-miR-4649-5p 1 0 0
chr17:42190710|42191106 hsa-miR-4701-3p 1 1 0
chr17:42190710|42191106 hsa-miR-4725-3p 0 1 0
chr17:42190710|42191106 hsa-miR-6729-5p 1 0 0
chr17:42190710|42191106 hsa-miR-6846-5p 1 0 0
chr17:42190710|42191106 hsa-miR-6848-5p 1 1 0
chr17:42190710|42191106 hsa-miR-6887-5p 1 0 0
chr17:42190710|42191106 hsa-miR-6889-5p 1 1 0
chr17:42190710|42191106 hsa-miR-6885-5p 1 0 0
chr17:42190710|42191106 hsa-miR-3085-5p 1 0 0
chr17:42190710|42191106 hsa-miR-1271-3p 1 0 0
chr17:42190710|42191106 hsa-miR-7151-3p 1 0 0
chr17:42190710|42191106 hsa-miR-10398-3p 1 0 0
chr17:42190710|42191106 hsa-miR-4667-5p 1 1 0
chr17:42190710|42191106 hsa-miR-6791-5p 1 0 0
chr17:42190710|42191106 hsa-miR-769-3p 0 1 0
chr17:42190710|42191106 hsa-miR-6801-3p 0 1 0
chr17:42190710|42191106 hsa-miR-6810-3p 0 1 0
chr17:42190710|42191106 hsa-miR-10392-3p 1 0 0
chr17:42190710|42191106 hsa-miR-500b-5p 0 1 0
chr17:42190710|42191106 hsa-miR-6744-3p 0 1 0
chr17:42190710|42191106 hsa-miR-6783-3p 1 1 0
chr17:42190710|42191106 hsa-miR-10394-5p 0 1 0
chr17:42190710|42191106 hsa-miR-6500-5p 1 0 0
chr17:42190710|42191106 hsa-miR-6876-3p 0 1 0
chr17:42190710|42191106 hsa-miR-3619-5p 1 0 0
chr17:42190710|42191106 hsa-miR-5195-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:42190710|42191106
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MKRRKGEAVEPRTQGWPFSSPGSPTCR
Nucleotide Sequence CTGAAGAGGAGGAAGGGAGAGGCAGTGGAGCCCAGGACACAAGGATGGCCCTTCAGCTCCCCGGGGTCACCTACCTGCAGATGA
CircID chr17:42190710|42191106
ORF Type ORF2
Protein Length 41
Nucleotide Length 126
Protein Sequence MIVGTNHSHHITQAAPDGVQVGVRSGPRSSELMPQAPSTVP
Nucleotide Sequence CTGATTGTAGGCACCAACCACTCGCACCACATCACCCAGGCGGCACCTGATGGGGTGCAAGTGGGAGTGAGGTCGGGCCCAAGGTCTTCTGAGCTCATGCCCCAGGCCCCCAGCACGGTCCCATAG
CircID chr17:42190710|42191106
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MVQPEEEEGRGSGAQDTRMALQLPGVTYLQMNLTTGH
Nucleotide Sequence CTGGTCCAGCCTGAAGAGGAGGAAGGGAGAGGCAGTGGAGCCCAGGACACAAGGATGGCCCTTCAGCTCCCCGGGGTCACCTACCTGCAGATGAACCTGACGACTGGACACTGA
CircID chr17:42190710|42191106
ORF Type ORF4
Protein Length 53
Nucleotide Length 159
Protein Sequence MSSCPRPPARSHRAPGSRGCAADHLVRLARSVSTSSYSLPCWASAKRRVEAAS
Nucleotide Sequence CTGAGCTCATGCCCCAGGCCCCCAGCACGGTCCCATAGGGCCCCAGGTAGCAGGGGCTGTGCAGCTGATCACCTGGTGAGGCTGGCGCGGTCCGTCAGCACCAGCTCATACTCCTTGCCCTGCTGGGCCTCGGCCAAAAGGAGGGTGGAGGCAGCTTCC
CircID chr17:42190710|42191106
ORF Type ORF5
Protein Length 56
Nucleotide Length 171
Protein Sequence MLPGALWDRAGGLGHELRRPWARPHSHLHPIRCRLGDVVRVVGAYNQCPVVRFICR
Nucleotide Sequence CTGCTACCTGGGGCCCTATGGGACCGTGCTGGGGGCCTGGGGCATGAGCTCAGAAGACCTTGGGCCCGACCTCACTCCCACTTGCACCCCATCAGGTGCCGCCTGGGTGATGTGGTGCGAGTGGTTGGTGCCTACAATCAGTGTCCAGTCGTCAGGTTCATCTGCAGGTAG
CircID chr17:42190710|42191106
ORF Type ORF6
Protein Length 61
Nucleotide Length 186
Protein Sequence MHSPCYLGPYGTVLGAWGMSSEDLGPDLTPTCTPSGAAWVMWCEWLVPTISVQSSGSSAGR
Nucleotide Sequence CTGCACAGCCCCTGCTACCTGGGGCCCTATGGGACCGTGCTGGGGGCCTGGGGCATGAGCTCAGAAGACCTTGGGCCCGACCTCACTCCCACTTGCACCCCATCAGGTGCCGCCTGGGTGATGTGGTGCGAGTGGTTGGTGCCTACAATCAGTGTCCAGTCGTCAGGTTCATCTGCAGGTAGGTGA
CircID chr17:42190710|42191106
ORF Type ORF7
Protein Length 27
Nucleotide Length 84
Protein Sequence MCPGLHCLSLPPLQAGPDPECARGRYW
Nucleotide Sequence TTGTGTCCTGGGCTCCACTGCCTCTCCCTTCCTCCTCTTCAGGCTGGACCAGACCCTGAGTGTGCGAGGGGAAGATATTGGTGA
CircID chr17:42190710|42191106
ORF Type ORF8
Protein Length 42
Nucleotide Length 126
Protein Sequence MQVGDPGELKGHPCVLGSTASPFLLFRLDQTLSVRGEDIGED
Nucleotide Sequence CTGCAGGTAGGTGACCCCGGGGAGCTGAAGGGCCATCCTTGTGTCCTGGGCTCCACTGCCTCTCCCTTCCTCCTCTTCAGGCTGGACCAGACCCTGAGTGTGCGAGGGGAAGATATTGGTGAAGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab