CircRNA Information

General Information
circRNA Basic Information
CircID chr17:42520386|42520661
Strand +
CircType exon
Host Gene ENSG00000033627.13;
Algorism CIRI2;
Sequence CTCTAAGGGAAGCCCCTCCAGAGACACTGGGCAAGCACCTCTGTTTGCTTGTTATTTTTCCTTGGGGGAGCAAAAGGGCGAGCTTGGAGTGAATGTTGAAGGCTTTCCATTTAAGGAAGGAAATTCCAAGGAAAGAGGGGGAGTTAGGAGGGGAAGTCTTCTCAAAGCAATGGCAAAAATATTCTCCAACCACAAAAACATCTGAGAAAGAATTCTTCTCTTGGGGACTAAAAAGAAAAAGCCTGAGCTCCCTTCCCAGCAGTTCAGCATCCATGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:42520386|42520661 hsa-miR-181c-5p 0 0 1
chr17:42520386|42520661 hsa-miR-181c-3p 0 0 1
chr17:42520386|42520661 hsa-miR-204-5p 0 0 1
chr17:42520386|42520661 hsa-miR-204-3p 0 0 1
chr17:42520386|42520661 hsa-miR-211-5p 0 0 1
chr17:42520386|42520661 hsa-miR-211-3p 0 0 1
chr17:42520386|42520661 hsa-miR-326 0 0 1
chr17:42520386|42520661 hsa-miR-484 0 0 1
chr17:42520386|42520661 hsa-miR-181d-5p 0 0 1
chr17:42520386|42520661 hsa-miR-181d-3p 0 0 1
chr17:42520386|42520661 hsa-miR-522-5p 0 0 1
chr17:42520386|42520661 hsa-miR-522-3p 0 0 1
chr17:42520386|42520661 hsa-miR-580-5p 0 0 1
chr17:42520386|42520661 hsa-miR-580-3p 0 0 1
chr17:42520386|42520661 hsa-miR-593-5p 0 0 1
chr17:42520386|42520661 hsa-miR-593-3p 0 0 1
chr17:42520386|42520661 hsa-miR-617 0 1 1
chr17:42520386|42520661 hsa-miR-620 0 0 1
chr17:42520386|42520661 hsa-miR-623 0 0 1
chr17:42520386|42520661 hsa-miR-636 0 1 1
chr17:42520386|42520661 hsa-miR-421 0 0 1
chr17:42520386|42520661 hsa-miR-543 0 0 1
chr17:42520386|42520661 hsa-miR-920 0 0 1
chr17:42520386|42520661 hsa-miR-1249-5p 0 0 1
chr17:42520386|42520661 hsa-miR-1249-3p 0 0 1
chr17:42520386|42520661 hsa-miR-1253 0 0 1
chr17:42520386|42520661 hsa-miR-1270 0 0 1
chr17:42520386|42520661 hsa-miR-129-5p 0 0 1
chr17:42520386|42520661 hsa-miR-199a-5p 0 0 1
chr17:42520386|42520661 hsa-miR-423-5p 0 0 1
chr17:42520386|42520661 hsa-miR-361-3p 0 0 1
chr17:42520386|42520661 hsa-miR-502-5p 0 0 1
chr17:42520386|42520661 hsa-miR-490-5p 0 0 1
chr17:42520386|42520661 hsa-miR-199b-5p 0 0 1
chr17:42520386|42520661 hsa-miR-483-3p 0 0 1
chr17:42520386|42520661 hsa-miR-330-5p 0 0 1
chr17:42520386|42520661 hsa-miR-181a 0 0 1
chr17:42520386|42520661 hsa-miR-181b 0 0 1
chr17:42520386|42520661 hsa-miR-1300 0 0 1
chr17:42520386|42520661 hsa-miR-516b 0 0 1
chr17:42520386|42520661 hsa-miR-1183 1 0 0
chr17:42520386|42520661 hsa-miR-4290 1 0 0
chr17:42520386|42520661 hsa-miR-4539 0 1 0
chr17:42520386|42520661 hsa-miR-4651 1 0 0
chr17:42520386|42520661 hsa-miR-8089 1 0 0
chr17:42520386|42520661 hsa-miR-12116 1 0 0
chr17:42520386|42520661 hsa-miR-92a-1-5p 1 0 0
chr17:42520386|42520661 hsa-miR-6861-5p 1 0 0
chr17:42520386|42520661 hsa-miR-4687-3p 1 0 0
chr17:42520386|42520661 hsa-miR-6854-5p 0 1 0
chr17:42520386|42520661 hsa-miR-3692-5p 0 1 0
chr17:42520386|42520661 hsa-miR-6741-5p 1 0 0
chr17:42520386|42520661 hsa-miR-6726-3p 0 1 0
chr17:42520386|42520661 hsa-miR-6832-3p 0 1 0
chr17:42520386|42520661 hsa-miR-491-5p 1 0 0
chr17:42520386|42520661 hsa-miR-1292-5p 1 0 0
chr17:42520386|42520661 hsa-miR-6850-5p 1 0 0
chr17:42520386|42520661 hsa-miR-3191-5p 0 1 0
chr17:42520386|42520661 hsa-miR-3202 1 1 0
chr17:42520386|42520661 hsa-miR-7111-3p 1 1 0
chr17:42520386|42520661 hsa-miR-4667-3p 0 1 0
chr17:42520386|42520661 hsa-miR-149-3p 1 0 0
chr17:42520386|42520661 hsa-miR-6830-5p 0 1 0
chr17:42520386|42520661 hsa-miR-6887-3p 1 1 0
chr17:42520386|42520661 hsa-miR-6814-5p 0 1 0
chr17:42520386|42520661 hsa-miR-6826-3p 1 1 0
chr17:42520386|42520661 hsa-miR-6886-3p 1 0 0
chr17:42520386|42520661 hsa-miR-4749-3p 1 0 0
chr17:42520386|42520661 hsa-miR-6795-3p 1 0 0
chr17:42520386|42520661 hsa-miR-6794-3p 1 0 0
chr17:42520386|42520661 hsa-miR-6880-3p 1 0 0
chr17:42520386|42520661 hsa-miR-518c-5p 0 1 0
chr17:42520386|42520661 hsa-miR-6800-3p 1 0 0
chr17:42520386|42520661 hsa-miR-99a-3p 0 1 0
chr17:42520386|42520661 hsa-miR-6816-5p 1 0 0
chr17:42520386|42520661 hsa-miR-1343-5p 1 0 0
chr17:42520386|42520661 hsa-miR-6726-5p 1 1 0
chr17:42520386|42520661 hsa-miR-6779-5p 1 0 0
chr17:42520386|42520661 hsa-miR-4728-5p 1 0 0
chr17:42520386|42520661 hsa-miR-5196-5p 1 1 0
chr17:42520386|42520661 hsa-miR-6780b-5p 1 0 0
chr17:42520386|42520661 hsa-miR-10526-3p 1 0 0
chr17:42520386|42520661 hsa-miR-939-5p 1 1 0
chr17:42520386|42520661 hsa-miR-4646-5p 1 1 0
chr17:42520386|42520661 hsa-miR-4747-5p 1 1 0
chr17:42520386|42520661 hsa-miR-6756-3p 1 0 0
chr17:42520386|42520661 hsa-miR-99b-3p 0 1 0
chr17:42520386|42520661 hsa-miR-5699-3p 1 0 0
chr17:42520386|42520661 hsa-miR-515-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr17:42520386|42520661
ORF Type ORF1
Protein Length 54
Nucleotide Length 165
Protein Sequence MFACYFSLGEQKGELGVNVEGFPFKEGNSKERGGVRRGSLLKAMAKIFSNHKNI
Nucleotide Sequence CTGTTTGCTTGTTATTTTTCCTTGGGGGAGCAAAAGGGCGAGCTTGGAGTGAATGTTGAAGGCTTTCCATTTAAGGAAGGAAATTCCAAGGAAAGAGGGGGAGTTAGGAGGGGAAGTCTTCTCAAAGCAATGGCAAAAATATTCTCCAACCACAAAAACATCTGA

CircID chr17:42520386|42520661
ORF Type ORF2
Protein Length 61
Nucleotide Length 183
Protein Sequence MLKAFHLRKEIPRKEGELGGEVFSKQWQKYSPTTKTSEKEFFSWGLKRKSLSSLPSSSASM
Nucleotide Sequence ATGTTGAAGGCTTTCCATTTAAGGAAGGAAATTCCAAGGAAAGAGGGGGAGTTAGGAGGGGAAGTCTTCTCAAAGCAATGGCAAAAATATTCTCCAACCACAAAAACATCTGAGAAAGAATTCTTCTCTTGGGGACTAAAAAGAAAAAGCCTGAGCTCCCTTCCCAGCAGTTCAGCATCCATG

CircID chr17:42520386|42520661
ORF Type ORF3
Protein Length 72
Nucleotide Length 219
Protein Sequence MLNCWEGSSGFFFLVPKRRILSQMFLWLENIFAIALRRLPLLTPPLSLEFPSLNGKPSTFTPSSPFCSPKEK
Nucleotide Sequence ATGCTGAACTGCTGGGAAGGGAGCTCAGGCTTTTTCTTTTTAGTCCCCAAGAGAAGAATTCTTTCTCAGATGTTTTTGTGGTTGGAGAATATTTTTGCCATTGCTTTGAGAAGACTTCCCCTCCTAACTCCCCCTCTTTCCTTGGAATTTCCTTCCTTAAATGGAAAGCCTTCAACATTCACTCCAAGCTCGCCCTTTTGCTCCCCCAAGGAAAAATAA

CircID chr17:42520386|42520661
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MESLQHSLQARPFAPPRKNNKQTEVLAQCLWRGFP
Nucleotide Sequence ATGGAAAGCCTTCAACATTCACTCCAAGCTCGCCCTTTTGCTCCCCCAAGGAAAAATAACAAGCAAACAGAGGTGCTTGCCCAGTGTCTCTGGAGGGGCTTCCCTTAG

CircID chr17:42520386|42520661
ORF Type ORF5
Protein Length 91
Nucleotide Length 273
Protein Sequence MDAELLGRELRLFLFSPQEKNSFSDVFVVGEYFCHCFEKTSPPNSPSFLGISFLKWKAFNIHSKLALLLPQGKITSKQRCLPSVSGGASLR
Nucleotide Sequence ATGGATGCTGAACTGCTGGGAAGGGAGCTCAGGCTTTTTCTTTTTAGTCCCCAAGAGAAGAATTCTTTCTCAGATGTTTTTGTGGTTGGAGAATATTTTTGCCATTGCTTTGAGAAGACTTCCCCTCCTAACTCCCCCTCTTTCCTTGGAATTTCCTTCCTTAAATGGAAAGCCTTCAACATTCACTCCAAGCTCGCCCTTTTGCTCCCCCAAGGAAAAATAACAAGCAAACAGAGGTGCTTGCCCAGTGTCTCTGGAGGGGCTTCCCTTAGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites