CircRNA Information

General Information
circRNA Basic Information
CircID chr17:42521881|42522087
Strand +
CircType exon
Host Gene ENSG00000033627.13;
Algorism CIRI2;
Sequence CCCTCCTGAGACCTGGGGCCAGTGTGGTGAGGAGGGGGCACTAGGGGCGGAGCCAGGCAGGCTGCAGGCAGAACCAAGAGGACCCCAGTCCCACACTGAAGACATCATGATTGGGGGTGGGGAAGATCTCAGGGTCTCCATCAGGGAAGAGCATCAGTCTGCACCCTCGGCCTGAGGGTGTGCTTGTGGGCAGGGCCCATGCAAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:42521881|42522087 hsa-miR-197-5p 0 0 1
chr17:42521881|42522087 hsa-miR-197-3p 0 0 1
chr17:42521881|42522087 hsa-miR-149-5p 0 0 1
chr17:42521881|42522087 hsa-miR-149-3p 0 0 1
chr17:42521881|42522087 hsa-miR-433-5p 0 0 1
chr17:42521881|42522087 hsa-miR-433-3p 0 0 1
chr17:42521881|42522087 hsa-miR-193b-5p 0 0 1
chr17:42521881|42522087 hsa-miR-193b-3p 0 0 1
chr17:42521881|42522087 hsa-miR-519e-5p 0 0 1
chr17:42521881|42522087 hsa-miR-519e-3p 0 0 1
chr17:42521881|42522087 hsa-miR-504-5p 0 0 1
chr17:42521881|42522087 hsa-miR-504-3p 0 0 1
chr17:42521881|42522087 hsa-miR-596 1 1 1
chr17:42521881|42522087 hsa-miR-661 0 0 1
chr17:42521881|42522087 hsa-miR-659-5p 0 0 1
chr17:42521881|42522087 hsa-miR-659-3p 0 0 1
chr17:42521881|42522087 hsa-miR-1236-5p 0 0 1
chr17:42521881|42522087 hsa-miR-1236-3p 0 0 1
chr17:42521881|42522087 hsa-miR-1291 0 1 1
chr17:42521881|42522087 hsa-miR-1266-5p 0 0 1
chr17:42521881|42522087 hsa-miR-1266-3p 0 0 1
chr17:42521881|42522087 hsa-miR-296-5p 0 0 1
chr17:42521881|42522087 hsa-miR-615-5p 0 1 1
chr17:42521881|42522087 hsa-miR-1184 0 1 1
chr17:42521881|42522087 hsa-miR-125a-5p 0 1 1
chr17:42521881|42522087 hsa-miR-515-3p 0 0 1
chr17:42521881|42522087 hsa-miR-193a-3p 0 1 1
chr17:42521881|42522087 hsa-miR-220b 0 0 1
chr17:42521881|42522087 hsa-miR-1274a 0 0 1
chr17:42521881|42522087 hsa-miR-125b 0 0 1
chr17:42521881|42522087 hsa-miR-1254 0 0 1
chr17:42521881|42522087 hsa-miR-371-3p 0 0 1
chr17:42521881|42522087 hsa-miR-346 1 1 0
chr17:42521881|42522087 hsa-miR-572 1 0 0
chr17:42521881|42522087 hsa-miR-636 1 0 0
chr17:42521881|42522087 hsa-miR-892b 0 1 0
chr17:42521881|42522087 hsa-miR-1913 1 0 0
chr17:42521881|42522087 hsa-miR-718 1 0 0
chr17:42521881|42522087 hsa-miR-3909 1 1 0
chr17:42521881|42522087 hsa-miR-4494 0 1 0
chr17:42521881|42522087 hsa-miR-4513 1 0 0
chr17:42521881|42522087 hsa-miR-4642 1 0 0
chr17:42521881|42522087 hsa-miR-4648 0 1 0
chr17:42521881|42522087 hsa-miR-5193 0 1 0
chr17:42521881|42522087 hsa-miR-6072 0 1 0
chr17:42521881|42522087 hsa-miR-6084 1 0 0
chr17:42521881|42522087 hsa-miR-8082 0 1 0
chr17:42521881|42522087 hsa-miR-6749-3p 1 0 0
chr17:42521881|42522087 hsa-miR-18a-3p 1 1 0
chr17:42521881|42522087 hsa-miR-7155-5p 0 1 0
chr17:42521881|42522087 hsa-miR-3194-3p 1 0 0
chr17:42521881|42522087 hsa-miR-6747-3p 1 1 0
chr17:42521881|42522087 hsa-miR-1273h-3p 0 1 0
chr17:42521881|42522087 hsa-miR-210-5p 1 1 0
chr17:42521881|42522087 hsa-miR-6804-5p 0 1 0
chr17:42521881|42522087 hsa-miR-1301-3p 1 0 0
chr17:42521881|42522087 hsa-miR-874-5p 0 1 0
chr17:42521881|42522087 hsa-miR-6875-3p 1 0 0
chr17:42521881|42522087 hsa-miR-6849-3p 1 0 0
chr17:42521881|42522087 hsa-miR-6841-3p 0 1 0
chr17:42521881|42522087 hsa-miR-423-3p 1 0 0
chr17:42521881|42522087 hsa-miR-6772-5p 1 1 0
chr17:42521881|42522087 hsa-miR-4725-5p 0 1 0
chr17:42521881|42522087 hsa-miR-4633-5p 1 0 0
chr17:42521881|42522087 hsa-miR-4763-5p 1 1 0
chr17:42521881|42522087 hsa-miR-1247-5p 1 0 0
chr17:42521881|42522087 hsa-miR-6894-3p 1 1 0
chr17:42521881|42522087 hsa-miR-5001-3p 1 0 0
chr17:42521881|42522087 hsa-miR-6757-3p 0 1 0
chr17:42521881|42522087 hsa-miR-7161-3p 0 1 0
chr17:42521881|42522087 hsa-miR-7113-3p 1 0 0
chr17:42521881|42522087 hsa-miR-3677-3p 1 0 0
chr17:42521881|42522087 hsa-miR-6877-5p 0 1 0
chr17:42521881|42522087 hsa-miR-7160-3p 1 0 0
chr17:42521881|42522087 hsa-miR-3120-5p 1 0 0
chr17:42521881|42522087 hsa-miR-6889-3p 1 0 0
chr17:42521881|42522087 hsa-miR-6785-3p 1 0 0
chr17:42521881|42522087 hsa-miR-873-3p 1 0 0
chr17:42521881|42522087 hsa-miR-6752-3p 1 1 0
chr17:42521881|42522087 hsa-miR-6738-3p 1 1 0
chr17:42521881|42522087 hsa-miR-4749-3p 1 0 0
chr17:42521881|42522087 hsa-miR-4649-3p 1 0 0
chr17:42521881|42522087 hsa-miR-6857-3p 1 0 0
chr17:42521881|42522087 hsa-miR-6812-3p 1 0 0
chr17:42521881|42522087 hsa-miR-1249-3p 1 0 0
chr17:42521881|42522087 hsa-miR-371b-3p 0 1 0
chr17:42521881|42522087 hsa-miR-6813-5p 1 0 0
chr17:42521881|42522087 hsa-miR-10401-5p 0 1 0
chr17:42521881|42522087 hsa-miR-1271-3p 1 0 0
chr17:42521881|42522087 hsa-miR-6724-5p 1 1 0
chr17:42521881|42522087 hsa-miR-6756-3p 0 1 0
chr17:42521881|42522087 hsa-miR-6805-3p 1 0 0
chr17:42521881|42522087 hsa-miR-6775-3p 1 1 0
chr17:42521881|42522087 hsa-miR-4723-3p 1 0 0
chr17:42521881|42522087 hsa-miR-3085-3p 1 0 0
chr17:42521881|42522087 hsa-miR-10394-5p 1 0 0
chr17:42521881|42522087 hsa-miR-151a-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:42521881|42522087
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MQAEPRGPQSHTEDIMIGGGEDLRVSIREEHQSAPSA
Nucleotide Sequence CTGCAGGCAGAACCAAGAGGACCCCAGTCCCACACTGAAGACATCATGATTGGGGGTGGGGAAGATCTCAGGGTCTCCATCAGGGAAGAGCATCAGTCTGCACCCTCGGCCTGA
CircID chr17:42521881|42522087
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MGVGKISGSPSGKSISLHPRPEGVLVGRAHAR
Nucleotide Sequence TTGGGGGTGGGGAAGATCTCAGGGTCTCCATCAGGGAAGAGCATCAGTCTGCACCCTCGGCCTGAGGGTGTGCTTGTGGGCAGGGCCCATGCAAGG
CircID chr17:42521881|42522087
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence MMETLRSSPPPIMMSSVWDWGPLGSACSLPGSAPSAPSSPHWPQVSGG
Nucleotide Sequence CTGATGGAGACCCTGAGATCTTCCCCACCCCCAATCATGATGTCTTCAGTGTGGGACTGGGGTCCTCTTGGTTCTGCCTGCAGCCTGCCTGGCTCCGCCCCTAGTGCCCCCTCCTCACCACACTGGCCCCAGGTCTCAGGAGGG
CircID chr17:42521881|42522087
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MVLPAACLAPPLVPPPHHTGPRSQE
Nucleotide Sequence TTGGTTCTGCCTGCAGCCTGCCTGGCTCCGCCCCTAGTGCCCCCTCCTCACCACACTGGCCCCAGGTCTCAGGAG
CircID chr17:42521881|42522087
ORF Type ORF5
Protein Length 50
Nucleotide Length 153
Protein Sequence MPTSTPSGRGCRLMLFPDGDPEIFPTPNHDVFSVGLGSSWFCLQPAWLRP
Nucleotide Sequence CTGCCCACAAGCACACCCTCAGGCCGAGGGTGCAGACTGATGCTCTTCCCTGATGGAGACCCTGAGATCTTCCCCACCCCCAATCATGATGTCTTCAGTGTGGGACTGGGGTCCTCTTGGTTCTGCCTGCAGCCTGCCTGGCTCCGCCCCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab