CircRNA Information

General Information
circRNA Basic Information
CircID chr17:42569560|42569807
Strand +
CircType exon
Host Gene ENSG00000108788.10;
Algorism CIRI2;
Sequence CTTCCTTACATTAATCCAACAGGCATTTCCTGAGTGTCTGCCATGTGTAAGGACAGTTGGGGATACACAGTCCTACTGGCTAGCTCAGGAACTAAGAGTATTATCTGTACAGCAGTAACTGATGTGGCCTTTGAACAAGGGAGGGTGTGCAATGAAGTTGCCTCAGAAGTTCTGGTTCCCCCCATTCAGCACCCCTCTTACACTTTCATGATCTTTAGGGCGGTGACATCCTTGCGTAACGTGGACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:42569560|42569807 hsa-miR-25-5p 0 0 1
chr17:42569560|42569807 hsa-miR-25-3p 0 0 1
chr17:42569560|42569807 hsa-miR-32-5p 0 0 1
chr17:42569560|42569807 hsa-miR-32-3p 0 0 1
chr17:42569560|42569807 hsa-miR-200b-5p 0 0 1
chr17:42569560|42569807 hsa-miR-200b-3p 0 0 1
chr17:42569560|42569807 hsa-miR-200c-5p 0 0 1
chr17:42569560|42569807 hsa-miR-200c-3p 0 0 1
chr17:42569560|42569807 hsa-miR-363-5p 0 0 1
chr17:42569560|42569807 hsa-miR-363-3p 0 0 1
chr17:42569560|42569807 hsa-miR-367-5p 0 0 1
chr17:42569560|42569807 hsa-miR-367-3p 0 0 1
chr17:42569560|42569807 hsa-miR-429 0 0 1
chr17:42569560|42569807 hsa-miR-510-5p 0 0 1
chr17:42569560|42569807 hsa-miR-510-3p 0 0 1
chr17:42569560|42569807 hsa-miR-92b-5p 0 0 1
chr17:42569560|42569807 hsa-miR-92b-3p 0 0 1
chr17:42569560|42569807 hsa-miR-575 0 1 1
chr17:42569560|42569807 hsa-miR-610 0 0 1
chr17:42569560|42569807 hsa-miR-623 0 1 1
chr17:42569560|42569807 hsa-miR-625-5p 0 0 1
chr17:42569560|42569807 hsa-miR-625-3p 0 0 1
chr17:42569560|42569807 hsa-miR-892a 0 0 1
chr17:42569560|42569807 hsa-miR-891b 0 0 1
chr17:42569560|42569807 hsa-miR-873-5p 0 0 1
chr17:42569560|42569807 hsa-miR-873-3p 0 0 1
chr17:42569560|42569807 hsa-miR-935 0 0 1
chr17:42569560|42569807 hsa-miR-1200 0 1 1
chr17:42569560|42569807 hsa-miR-1265 0 0 1
chr17:42569560|42569807 hsa-miR-1827 0 0 1
chr17:42569560|42569807 hsa-miR-342-5p 0 0 1
chr17:42569560|42569807 hsa-miR-369-3p 0 0 1
chr17:42569560|42569807 hsa-miR-92a 0 0 1
chr17:42569560|42569807 hsa-miR-3169 0 1 0
chr17:42569560|42569807 hsa-miR-4506 1 0 0
chr17:42569560|42569807 hsa-miR-5194 1 1 0
chr17:42569560|42569807 hsa-miR-12124 0 1 0
chr17:42569560|42569807 hsa-miR-4687-3p 1 0 0
chr17:42569560|42569807 hsa-miR-6741-5p 1 0 0
chr17:42569560|42569807 hsa-miR-3928-3p 1 0 0
chr17:42569560|42569807 hsa-miR-491-5p 1 0 0
chr17:42569560|42569807 hsa-miR-1292-5p 1 0 0
chr17:42569560|42569807 hsa-miR-3180-3p 1 0 0
chr17:42569560|42569807 hsa-miR-6827-5p 1 0 0
chr17:42569560|42569807 hsa-miR-6782-5p 1 1 0
chr17:42569560|42569807 hsa-miR-345-3p 1 0 0
chr17:42569560|42569807 hsa-miR-7109-5p 1 1 0
chr17:42569560|42569807 hsa-miR-149-3p 1 0 0
chr17:42569560|42569807 hsa-miR-194-3p 0 1 0
chr17:42569560|42569807 hsa-miR-5010-5p 1 0 0
chr17:42569560|42569807 hsa-miR-4776-5p 1 0 0
chr17:42569560|42569807 hsa-miR-92a-3p 0 1 0
chr17:42569560|42569807 hsa-miR-6768-3p 1 1 0
chr17:42569560|42569807 hsa-miR-942-3p 0 1 0
chr17:42569560|42569807 hsa-miR-4693-5p 0 1 0
chr17:42569560|42569807 hsa-miR-6812-5p 0 1 0
chr17:42569560|42569807 hsa-miR-6752-5p 1 0 0
chr17:42569560|42569807 hsa-miR-6803-5p 1 0 0
chr17:42569560|42569807 hsa-miR-6722-3p 1 0 0
chr17:42569560|42569807 hsa-miR-7111-5p 1 0 0
chr17:42569560|42569807 hsa-miR-328-5p 1 0 0
chr17:42569560|42569807 hsa-miR-4745-5p 1 0 0
chr17:42569560|42569807 hsa-miR-6795-5p 1 1 0
chr17:42569560|42569807 hsa-miR-6846-5p 1 0 0
chr17:42569560|42569807 hsa-miR-6887-5p 1 1 0
chr17:42569560|42569807 hsa-miR-4723-5p 1 1 0
chr17:42569560|42569807 hsa-miR-6885-5p 1 0 0
chr17:42569560|42569807 hsa-miR-939-5p 1 1 0
chr17:42569560|42569807 hsa-miR-4758-5p 1 0 0
chr17:42569560|42569807 hsa-miR-1914-3p 0 1 0
chr17:42569560|42569807 hsa-miR-324-3p 1 0 0
chr17:42569560|42569807 hsa-miR-6766-5p 1 0 0
chr17:42569560|42569807 hsa-miR-550a-3-5p 1 0 0
chr17:42569560|42569807 hsa-miR-550a-5p 1 0 0
chr17:42569560|42569807 hsa-miR-6822-5p 1 0 0
chr17:42569560|42569807 hsa-miR-4676-5p 0 1 0
chr17:42569560|42569807 hsa-miR-3914 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr17:42569560|42569807
ORF Type ORF1
Protein Length 68
Nucleotide Length 204
Protein Sequence MCKDSWGYTVLLASSGTKSIICTAVTDVAFEQGRVCNEVASEVLVPPIQHPSYTFMIFRAVTSLRNVD
Nucleotide Sequence ATGTGTAAGGACAGTTGGGGATACACAGTCCTACTGGCTAGCTCAGGAACTAAGAGTATTATCTGTACAGCAGTAACTGATGTGGCCTTTGAACAAGGGAGGGTGTGCAATGAAGTTGCCTCAGAAGTTCTGGTTCCCCCCATTCAGCACCCCTCTTACACTTTCATGATCTTTAGGGCGGTGACATCCTTGCGTAACGTGGAC

CircID chr17:42569560|42569807
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MPCVRTVGDTQSYWLAQELRVLSVQQ
Nucleotide Sequence CTGCCATGTGTAAGGACAGTTGGGGATACACAGTCCTACTGGCTAGCTCAGGAACTAAGAGTATTATCTGTACAGCAGTAA

CircID chr17:42569560|42569807
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MMWPLNKGGCAMKLPQKFWFPPFSTPLTLS
Nucleotide Sequence CTGATGTGGCCTTTGAACAAGGGAGGGTGTGCAATGAAGTTGCCTCAGAAGTTCTGGTTCCCCCCATTCAGCACCCCTCTTACACTTTCATGA

CircID chr17:42569560|42569807
ORF Type ORF4
Protein Length 59
Nucleotide Length 180
Protein Sequence MGGTRTSEATSLHTLPCSKATSVTAVQIILLVPELASRTVYPQLSLHMADTQEMPVGLM
Nucleotide Sequence ATGGGGGGAACCAGAACTTCTGAGGCAACTTCATTGCACACCCTCCCTTGTTCAAAGGCCACATCAGTTACTGCTGTACAGATAATACTCTTAGTTCCTGAGCTAGCCAGTAGGACTGTGTATCCCCAACTGTCCTTACACATGGCAGACACTCAGGAAATGCCTGTTGGATTAATGTAA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites