CircRNA Information

General Information
circRNA Basic Information
CircID chr17:42615002|42615129
Strand -
CircType exon
Host Gene ENSG00000131462.6;
Algorism CIRI2;
Sequence ACGGCCAGACTACATCTCCTGGGGCACCCAGGAGCAGTGAGTCCCCCAGGACAGGGACCCTCATCTGCCTTACTGGTTGGCCCAAGCCCTGCCTGACTGACCACCCCCTCAGAGCACAGATCAGGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:42615002|42615129 hsa-miR-506-5p 0 0 1
chr17:42615002|42615129 hsa-miR-506-3p 0 0 1
chr17:42615002|42615129 hsa-miR-608 1 1 1
chr17:42615002|42615129 hsa-miR-625-5p 0 0 1
chr17:42615002|42615129 hsa-miR-625-3p 0 0 1
chr17:42615002|42615129 hsa-miR-635 0 0 1
chr17:42615002|42615129 hsa-miR-637 0 1 1
chr17:42615002|42615129 hsa-miR-665 0 0 1
chr17:42615002|42615129 hsa-miR-940 0 1 1
chr17:42615002|42615129 hsa-miR-1293 0 0 1
chr17:42615002|42615129 hsa-miR-1275 0 0 1
chr17:42615002|42615129 hsa-miR-339-5p 0 1 1
chr17:42615002|42615129 hsa-miR-423-5p 0 0 1
chr17:42615002|42615129 hsa-miR-1207-5p 1 0 1
chr17:42615002|42615129 hsa-miR-125a-5p 0 0 1
chr17:42615002|42615129 hsa-miR-1274a 0 0 1
chr17:42615002|42615129 hsa-miR-323-5p 0 0 1
chr17:42615002|42615129 hsa-miR-125b 0 0 1
chr17:42615002|42615129 hsa-miR-1274b 0 0 1
chr17:42615002|42615129 hsa-miR-124 0 0 1
chr17:42615002|42615129 hsa-miR-3714 0 1 0
chr17:42615002|42615129 hsa-miR-4483 0 1 0
chr17:42615002|42615129 hsa-miR-4514 0 1 0
chr17:42615002|42615129 hsa-miR-4651 1 1 0
chr17:42615002|42615129 hsa-miR-4692 0 1 0
chr17:42615002|42615129 hsa-miR-6132 0 1 0
chr17:42615002|42615129 hsa-miR-12119 1 1 0
chr17:42615002|42615129 hsa-miR-323a-5p 0 1 0
chr17:42615002|42615129 hsa-miR-6765-5p 1 0 0
chr17:42615002|42615129 hsa-miR-125a-3p 1 0 0
chr17:42615002|42615129 hsa-miR-6741-5p 0 1 0
chr17:42615002|42615129 hsa-miR-6776-5p 0 1 0
chr17:42615002|42615129 hsa-miR-6732-5p 1 1 0
chr17:42615002|42615129 hsa-miR-6888-5p 0 1 0
chr17:42615002|42615129 hsa-miR-1343-3p 0 1 0
chr17:42615002|42615129 hsa-miR-6772-3p 0 1 0
chr17:42615002|42615129 hsa-miR-1226-5p 1 0 0
chr17:42615002|42615129 hsa-miR-4640-5p 1 0 0
chr17:42615002|42615129 hsa-miR-4787-5p 1 0 0
chr17:42615002|42615129 hsa-miR-1266-3p 1 1 0
chr17:42615002|42615129 hsa-miR-6742-3p 0 1 0
chr17:42615002|42615129 hsa-miR-7112-5p 1 0 0
chr17:42615002|42615129 hsa-miR-664b-5p 1 0 0
chr17:42615002|42615129 hsa-miR-744-5p 1 1 0
chr17:42615002|42615129 hsa-miR-4763-3p 1 1 0
chr17:42615002|42615129 hsa-miR-6893-5p 0 1 0
chr17:42615002|42615129 hsa-miR-6737-5p 1 0 0
chr17:42615002|42615129 hsa-miR-6752-5p 1 1 0
chr17:42615002|42615129 hsa-miR-6756-5p 1 0 0
chr17:42615002|42615129 hsa-miR-6803-5p 1 0 0
chr17:42615002|42615129 hsa-miR-6819-5p 1 0 0
chr17:42615002|42615129 hsa-miR-6842-5p 1 1 0
chr17:42615002|42615129 hsa-miR-6851-5p 1 0 0
chr17:42615002|42615129 hsa-miR-6722-3p 1 0 0
chr17:42615002|42615129 hsa-miR-6751-5p 1 0 0
chr17:42615002|42615129 hsa-miR-6774-5p 1 0 0
chr17:42615002|42615129 hsa-miR-6808-5p 1 1 0
chr17:42615002|42615129 hsa-miR-7111-5p 1 0 0
chr17:42615002|42615129 hsa-miR-6836-5p 0 1 0
chr17:42615002|42615129 hsa-miR-10396b-5p 1 0 0
chr17:42615002|42615129 hsa-miR-4685-5p 1 0 0
chr17:42615002|42615129 hsa-miR-6858-5p 1 0 0
chr17:42615002|42615129 hsa-miR-4758-5p 1 0 0
chr17:42615002|42615129 hsa-miR-6511a-5p 0 1 0
chr17:42615002|42615129 hsa-miR-5008-3p 1 1 0
chr17:42615002|42615129 hsa-miR-1914-3p 1 0 0
chr17:42615002|42615129 hsa-miR-6724-5p 1 0 0
chr17:42615002|42615129 hsa-miR-6791-5p 1 0 0
chr17:42615002|42615129 hsa-miR-6775-3p 1 0 0
chr17:42615002|42615129 hsa-miR-6783-3p 0 1 0
chr17:42615002|42615129 hsa-miR-10397-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:42615002|42615129
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MGHPGAVSPPGQGPSSALLVGPSPA
Nucleotide Sequence CTGGGGCACCCAGGAGCAGTGAGTCCCCCAGGACAGGGACCCTCATCTGCCTTACTGGTTGGCCCAAGCCCTGCCTGA
CircID chr17:42615002|42615129
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MCSEGVVSQAGLGPTSKADEGPCPGGLTAPGCPRRCSLA
Nucleotide Sequence CTGTGCTCTGAGGGGGTGGTCAGTCAGGCAGGGCTTGGGCCAACCAGTAAGGCAGATGAGGGTCCCTGTCCTGGGGGACTCACTGCTCCTGGGTGCCCCAGGAGATGTAGTCTGGCC
CircID chr17:42615002|42615129
ORF Type ORF3
Protein Length 41
Nucleotide Length 123
Protein Sequence MICALRGWSVRQGLGQPVRQMRVPVLGDSLLLGAPGDVVWP
Nucleotide Sequence CTGATCTGTGCTCTGAGGGGGTGGTCAGTCAGGCAGGGCTTGGGCCAACCAGTAAGGCAGATGAGGGTCCCTGTCCTGGGGGACTCACTGCTCCTGGGTGCCCCAGGAGATGTAGTCTGGCCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab