CircRNA Information

General Information
circRNA Basic Information
CircID chr17:42834515|42837677
Strand +
CircType exon
Host Gene ENSG00000131467.9;
Algorism CIRI2;
Sequence TCATCCAACCTTCGCTTCTTATAAGTGGGACCATCCAGTCCATCATGGCTATTGGTGAGAAGAATGGGGTCAGGGACTGGGAGATTCATGTCAGAGTGGATCTGAGTTAGGTCATGGATGTTTAAGATTGGTTCCTGAAAGACACCCACCCCAAAACATTAATCTTTTCAAGCTGAACAAAGAAGTATTTGATTTGAAGAGCAAGAAATGAAAGTGCTTTTACAGTTTAAAAAAATAAAAAGAAGAAGAATCAACAGTTTATCCCAGTTGACAGTAATACCAGGGCCAAAAAAATTGGGGAATTTGAGGAAAGAATAGGGTCTCTCACCTTCAGAAAACTATCAAGTTCTAATAACTTCTTTGGGAAAAAATTTGCCACCAAGTCTTCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:42834515|42837677 hsa-miR-192-5p 0 0 1
chr17:42834515|42837677 hsa-miR-192-3p 0 0 1
chr17:42834515|42837677 hsa-miR-215-5p 0 0 1
chr17:42834515|42837677 hsa-miR-215-3p 0 0 1
chr17:42834515|42837677 hsa-miR-150-5p 0 0 1
chr17:42834515|42837677 hsa-miR-150-3p 0 0 1
chr17:42834515|42837677 hsa-miR-375-5p 0 0 1
chr17:42834515|42837677 hsa-miR-375-3p 0 0 1
chr17:42834515|42837677 hsa-miR-328-5p 0 0 1
chr17:42834515|42837677 hsa-miR-328-3p 0 0 1
chr17:42834515|42837677 hsa-miR-511-5p 0 0 1
chr17:42834515|42837677 hsa-miR-511-3p 0 0 1
chr17:42834515|42837677 hsa-miR-493-5p 0 0 1
chr17:42834515|42837677 hsa-miR-493-3p 0 0 1
chr17:42834515|42837677 hsa-miR-505-5p 0 0 1
chr17:42834515|42837677 hsa-miR-505-3p 0 0 1
chr17:42834515|42837677 hsa-miR-578 0 0 1
chr17:42834515|42837677 hsa-miR-579-5p 0 0 1
chr17:42834515|42837677 hsa-miR-579-3p 0 0 1
chr17:42834515|42837677 hsa-miR-607 0 0 1
chr17:42834515|42837677 hsa-miR-608 0 0 1
chr17:42834515|42837677 hsa-miR-609 0 0 1
chr17:42834515|42837677 hsa-miR-298 0 0 1
chr17:42834515|42837677 hsa-miR-873-5p 0 0 1
chr17:42834515|42837677 hsa-miR-873-3p 0 0 1
chr17:42834515|42837677 hsa-miR-942-5p 0 0 1
chr17:42834515|42837677 hsa-miR-942-3p 0 0 1
chr17:42834515|42837677 hsa-miR-1229-5p 0 0 1
chr17:42834515|42837677 hsa-miR-1229-3p 0 0 1
chr17:42834515|42837677 hsa-miR-1238-5p 0 0 1
chr17:42834515|42837677 hsa-miR-1238-3p 0 0 1
chr17:42834515|42837677 hsa-miR-1291 0 0 1
chr17:42834515|42837677 hsa-miR-1243 0 1 1
chr17:42834515|42837677 hsa-miR-1255a 0 0 1
chr17:42834515|42837677 hsa-miR-548g-5p 0 0 1
chr17:42834515|42837677 hsa-miR-548g-3p 0 0 1
chr17:42834515|42837677 hsa-miR-1267 0 0 1
chr17:42834515|42837677 hsa-miR-1288-5p 0 0 1
chr17:42834515|42837677 hsa-miR-1288-3p 0 0 1
chr17:42834515|42837677 hsa-miR-129-5p 0 0 1
chr17:42834515|42837677 hsa-miR-532-3p 0 0 1
chr17:42834515|42837677 hsa-miR-409-3p 0 0 1
chr17:42834515|42837677 hsa-miR-342-5p 0 0 1
chr17:42834515|42837677 hsa-miR-125a-5p 0 0 1
chr17:42834515|42837677 hsa-miR-125b 0 0 1
chr17:42834515|42837677 hsa-miR-1255b 0 0 1
chr17:42834515|42837677 hsa-miR-1269 0 0 1
chr17:42834515|42837677 hsa-miR-760 1 0 0
chr17:42834515|42837677 hsa-miR-548k 0 1 0
chr17:42834515|42837677 hsa-miR-1269a 0 1 0
chr17:42834515|42837677 hsa-miR-1538 1 0 0
chr17:42834515|42837677 hsa-miR-4281 1 0 0
chr17:42834515|42837677 hsa-miR-4515 0 1 0
chr17:42834515|42837677 hsa-miR-4651 1 1 0
chr17:42834515|42837677 hsa-miR-5572 0 1 0
chr17:42834515|42837677 hsa-miR-7703 1 0 0
chr17:42834515|42837677 hsa-miR-432-3p 0 1 0
chr17:42834515|42837677 hsa-miR-8071 0 1 0
chr17:42834515|42837677 hsa-miR-3189-5p 1 0 0
chr17:42834515|42837677 hsa-miR-4728-3p 1 0 0
chr17:42834515|42837677 hsa-miR-6782-5p 1 1 0
chr17:42834515|42837677 hsa-miR-4713-5p 0 1 0
chr17:42834515|42837677 hsa-miR-3934-3p 1 0 0
chr17:42834515|42837677 hsa-miR-516b-5p 0 1 0
chr17:42834515|42837677 hsa-miR-4732-3p 0 1 0
chr17:42834515|42837677 hsa-miR-6719-3p 0 1 0
chr17:42834515|42837677 hsa-miR-670-3p 0 1 0
chr17:42834515|42837677 hsa-miR-3124-3p 0 1 0
chr17:42834515|42837677 hsa-miR-490-5p 0 1 0
chr17:42834515|42837677 hsa-miR-3688-5p 0 1 0
chr17:42834515|42837677 hsa-miR-6769a-5p 0 1 0
chr17:42834515|42837677 hsa-miR-6506-5p 0 1 0
chr17:42834515|42837677 hsa-miR-30e-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:42834515|42837677
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MKVLLQFKKIKRRRINSLSQLTVIPGPKKLGNLRKE
Nucleotide Sequence ATGAAAGTGCTTTTACAGTTTAAAAAAATAAAAAGAAGAAGAATCAACAGTTTATCCCAGTTGACAGTAATACCAGGGCCAAAAAAATTGGGGAATTTGAGGAAAGAATAG
CircID chr17:42834515|42837677
ORF Type ORF2
Protein Length 44
Nucleotide Length 135
Protein Sequence MGDSCQSGSELGHGCLRLVPERHPPQNINLFKLNKEVFDLKSKK
Nucleotide Sequence CTGGGAGATTCATGTCAGAGTGGATCTGAGTTAGGTCATGGATGTTTAAGATTGGTTCCTGAAAGACACCCACCCCAAAACATTAATCTTTTCAAGCTGAACAAAGAAGTATTTGATTTGAAGAGCAAGAAATGA
CircID chr17:42834515|42837677
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence MVANFFPKKLLELDSFLKVRDPILSSNSPIFLALVLLSTGINC
Nucleotide Sequence TTGGTGGCAAATTTTTTCCCAAAGAAGTTATTAGAACTTGATAGTTTTCTGAAGGTGAGAGACCCTATTCTTTCCTCAAATTCCCCAATTTTTTTGGCCCTGGTATTACTGTCAACTGGGATAAACTGTTGA
CircID chr17:42834515|42837677
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MLFKSNTSLFSLKRLMFWGGCLSGTNLKHP
Nucleotide Sequence TTGCTCTTCAAATCAAATACTTCTTTGTTCAGCTTGAAAAGATTAATGTTTTGGGGTGGGTGTCTTTCAGGAACCAATCTTAAACATCCATGA
CircID chr17:42834515|42837677
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MLILLLFIFLNCKSTFISCSSNQILLCSA
Nucleotide Sequence CTGTTGATTCTTCTTCTTTTTATTTTTTTAAACTGTAAAAGCACTTTCATTTCTTGCTCTTCAAATCAAATACTTCTTTGTTCAGCTTGA
CircID chr17:42834515|42837677
ORF Type ORF6
Protein Length 29
Nucleotide Length 87
Protein Sequence MNLPVPDPILLTNSHDGLDGPTYKKRRLD
Nucleotide Sequence ATGAATCTCCCAGTCCCTGACCCCATTCTTCTCACCAATAGCCATGATGGACTGGATGGTCCCACTTATAAGAAGCGAAGGTTGGAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab