CircRNA Information

General Information
circRNA Basic Information
CircID chr17:43014745|43014887
Strand -
CircType exon
Host Gene ENSG00000108828.14;
Algorism CIRI2;
Sequence CTCCCATTGCAATGGTTGGGGCAATAACCCTCCCTAATCCTAGCTCAGTGAGTAGAGGGAGTGACCTCCCTACCCAGGAAGTCCCCATTTTGGTTGCAATGGCCCAGGTCCTGACCATCCCACTCTGTACTTCCCTGCTCCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:43014745|43014887 hsa-miR-137-5p 0 0 1
chr17:43014745|43014887 hsa-miR-137-3p 0 0 1
chr17:43014745|43014887 hsa-miR-492 0 0 1
chr17:43014745|43014887 hsa-miR-610 0 0 1
chr17:43014745|43014887 hsa-miR-617 0 0 1
chr17:43014745|43014887 hsa-miR-631 0 1 1
chr17:43014745|43014887 hsa-miR-668-5p 0 0 1
chr17:43014745|43014887 hsa-miR-668-3p 0 0 1
chr17:43014745|43014887 hsa-miR-1321 0 0 1
chr17:43014745|43014887 hsa-miR-483-3p 0 0 1
chr17:43014745|43014887 hsa-miR-642 0 0 1
chr17:43014745|43014887 hsa-miR-601 1 0 0
chr17:43014745|43014887 hsa-miR-608 1 0 0
chr17:43014745|43014887 hsa-miR-637 1 0 0
chr17:43014745|43014887 hsa-miR-760 1 0 0
chr17:43014745|43014887 hsa-miR-1258 0 1 0
chr17:43014745|43014887 hsa-miR-1193 0 1 0
chr17:43014745|43014887 hsa-miR-3661 0 1 0
chr17:43014745|43014887 hsa-miR-4425 1 0 0
chr17:43014745|43014887 hsa-miR-4469 0 1 0
chr17:43014745|43014887 hsa-miR-4481 0 1 0
chr17:43014745|43014887 hsa-miR-4507 1 0 0
chr17:43014745|43014887 hsa-miR-4651 1 0 0
chr17:43014745|43014887 hsa-miR-4654 1 1 0
chr17:43014745|43014887 hsa-miR-4688 1 0 0
chr17:43014745|43014887 hsa-miR-4706 1 0 0
chr17:43014745|43014887 hsa-miR-4739 1 1 0
chr17:43014745|43014887 hsa-miR-5090 1 0 0
chr17:43014745|43014887 hsa-miR-8054 0 1 0
chr17:43014745|43014887 hsa-miR-8082 0 1 0
chr17:43014745|43014887 hsa-miR-8089 1 0 0
chr17:43014745|43014887 hsa-miR-4433b-3p 1 0 0
chr17:43014745|43014887 hsa-miR-6861-5p 1 1 0
chr17:43014745|43014887 hsa-miR-6857-5p 1 0 0
chr17:43014745|43014887 hsa-miR-6510-5p 0 1 0
chr17:43014745|43014887 hsa-miR-6728-5p 1 1 0
chr17:43014745|43014887 hsa-miR-6757-5p 1 0 0
chr17:43014745|43014887 hsa-miR-8069 1 0 0
chr17:43014745|43014887 hsa-miR-6742-5p 1 0 0
chr17:43014745|43014887 hsa-miR-486-3p 0 1 0
chr17:43014745|43014887 hsa-miR-6782-5p 1 0 0
chr17:43014745|43014887 hsa-miR-939-3p 1 1 0
chr17:43014745|43014887 hsa-miR-1229-5p 0 1 0
chr17:43014745|43014887 hsa-miR-4640-5p 1 0 0
chr17:43014745|43014887 hsa-miR-6749-5p 1 0 0
chr17:43014745|43014887 hsa-miR-193a-5p 1 0 0
chr17:43014745|43014887 hsa-miR-7156-3p 1 0 0
chr17:43014745|43014887 hsa-miR-6793-3p 0 1 0
chr17:43014745|43014887 hsa-miR-6508-3p 0 1 0
chr17:43014745|43014887 hsa-miR-3680-5p 0 1 0
chr17:43014745|43014887 hsa-miR-1207-5p 1 0 0
chr17:43014745|43014887 hsa-miR-1233-5p 1 0 0
chr17:43014745|43014887 hsa-miR-4763-3p 1 0 0
chr17:43014745|43014887 hsa-miR-6737-5p 1 1 0
chr17:43014745|43014887 hsa-miR-6743-5p 1 0 0
chr17:43014745|43014887 hsa-miR-6756-5p 1 0 0
chr17:43014745|43014887 hsa-miR-6819-5p 1 0 0
chr17:43014745|43014887 hsa-miR-6842-5p 1 0 0
chr17:43014745|43014887 hsa-miR-6722-3p 1 0 0
chr17:43014745|43014887 hsa-miR-6763-5p 1 0 0
chr17:43014745|43014887 hsa-miR-6808-5p 1 0 0
chr17:43014745|43014887 hsa-miR-6879-5p 1 0 0
chr17:43014745|43014887 hsa-miR-7111-5p 1 0 0
chr17:43014745|43014887 hsa-miR-3620-5p 1 0 0
chr17:43014745|43014887 hsa-miR-4726-5p 1 0 0
chr17:43014745|43014887 hsa-miR-4745-5p 1 1 0
chr17:43014745|43014887 hsa-miR-4749-5p 1 0 0
chr17:43014745|43014887 hsa-miR-6794-5p 1 0 0
chr17:43014745|43014887 hsa-miR-6846-5p 1 0 0
chr17:43014745|43014887 hsa-miR-4758-5p 1 0 0
chr17:43014745|43014887 hsa-miR-4769-5p 0 1 0
chr17:43014745|43014887 hsa-miR-365a-5p 0 1 0
chr17:43014745|43014887 hsa-miR-365b-5p 0 1 0
chr17:43014745|43014887 hsa-miR-6724-5p 1 0 0
chr17:43014745|43014887 hsa-miR-6762-5p 1 0 0
chr17:43014745|43014887 hsa-miR-769-3p 1 0 0
chr17:43014745|43014887 hsa-miR-4756-5p 1 1 0
chr17:43014745|43014887 hsa-miR-370-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:43014745|43014887
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MVGAITLPNPSSVSRGSDLPTQEVPILVAMAQVLTIPLCTSLLH
Nucleotide Sequence ATGGTTGGGGCAATAACCCTCCCTAATCCTAGCTCAGTGAGTAGAGGGAGTGACCTCCCTACCCAGGAAGTCCCCATTTTGGTTGCAATGGCCCAGGTCCTGACCATCCCACTCTGTACTTCCCTGCTCCAT
CircID chr17:43014745|43014887
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MEQGSTEWDGQDLGHCNQNGDFLGREVTPSTH
Nucleotide Sequence ATGGAGCAGGGAAGTACAGAGTGGGATGGTCAGGACCTGGGCCATTGCAACCAAAATGGGGACTTCCTGGGTAGGGAGGTCACTCCCTCTACTCACTGA
CircID chr17:43014745|43014887
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MVRTWAIATKMGTSWVGRSLPLLTELGLGRVIAPTIAMG
Nucleotide Sequence ATGGTCAGGACCTGGGCCATTGCAACCAAAATGGGGACTTCCTGGGTAGGGAGGTCACTCCCTCTACTCACTGAGCTAGGATTAGGGAGGGTTATTGCCCCAACCATTGCAATGGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab