CircRNA Information

General Information
circRNA Basic Information
CircID chr17:43015762|43015884
Strand -
CircType exon
Host Gene ENSG00000108828.14;
Algorism CIRI2;
Sequence CTTGGCACAAAAGCAGCACAGCAGGCCCGGGGAAAGGGTGGGGGCAGGAAGCAGCCGGCCTCCCTCTGACCCTCCCTGTCGCCTTGGCAGGGCCCAGACATCCAAATGGTCACTTCCCAACCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:43015762|43015884 hsa-miR-370-5p 0 0 1
chr17:43015762|43015884 hsa-miR-370-3p 0 0 1
chr17:43015762|43015884 hsa-miR-591 0 0 1
chr17:43015762|43015884 hsa-miR-612 0 0 1
chr17:43015762|43015884 hsa-miR-1227-5p 0 0 1
chr17:43015762|43015884 hsa-miR-1227-3p 0 0 1
chr17:43015762|43015884 hsa-miR-1231 0 1 1
chr17:43015762|43015884 hsa-miR-1291 0 0 1
chr17:43015762|43015884 hsa-miR-1321 0 0 1
chr17:43015762|43015884 hsa-miR-296-5p 0 0 1
chr17:43015762|43015884 hsa-miR-654-3p 0 0 1
chr17:43015762|43015884 hsa-miR-324-3p 0 0 1
chr17:43015762|43015884 hsa-miR-516a-3p 0 0 1
chr17:43015762|43015884 hsa-miR-1285 0 0 1
chr17:43015762|43015884 hsa-miR-1273 0 0 1
chr17:43015762|43015884 hsa-miR-1913 0 1 0
chr17:43015762|43015884 hsa-miR-2861 1 0 0
chr17:43015762|43015884 hsa-miR-3147 1 0 0
chr17:43015762|43015884 hsa-miR-4270 0 1 0
chr17:43015762|43015884 hsa-miR-4292 1 0 0
chr17:43015762|43015884 hsa-miR-4449 1 0 0
chr17:43015762|43015884 hsa-miR-4486 1 0 0
chr17:43015762|43015884 hsa-miR-4739 1 1 0
chr17:43015762|43015884 hsa-miR-6129 0 1 0
chr17:43015762|43015884 hsa-miR-6133 0 1 0
chr17:43015762|43015884 hsa-miR-92a-1-5p 1 1 0
chr17:43015762|43015884 hsa-miR-6825-5p 1 0 0
chr17:43015762|43015884 hsa-miR-6857-5p 1 0 0
chr17:43015762|43015884 hsa-miR-6799-5p 1 0 0
chr17:43015762|43015884 hsa-miR-3677-5p 1 0 0
chr17:43015762|43015884 hsa-miR-6840-5p 1 0 0
chr17:43015762|43015884 hsa-miR-6762-3p 0 1 0
chr17:43015762|43015884 hsa-miR-7845-5p 0 1 0
chr17:43015762|43015884 hsa-miR-6732-5p 1 0 0
chr17:43015762|43015884 hsa-miR-30b-3p 1 1 0
chr17:43015762|43015884 hsa-miR-939-3p 1 0 0
chr17:43015762|43015884 hsa-miR-6763-3p 0 1 0
chr17:43015762|43015884 hsa-miR-6771-5p 1 0 0
chr17:43015762|43015884 hsa-miR-6749-5p 0 1 0
chr17:43015762|43015884 hsa-miR-7854-3p 1 0 0
chr17:43015762|43015884 hsa-miR-149-3p 1 1 0
chr17:43015762|43015884 hsa-miR-6824-5p 1 0 0
chr17:43015762|43015884 hsa-miR-887-5p 1 0 0
chr17:43015762|43015884 hsa-miR-4707-5p 1 0 0
chr17:43015762|43015884 hsa-miR-6801-5p 0 1 0
chr17:43015762|43015884 hsa-miR-6752-3p 0 1 0
chr17:43015762|43015884 hsa-miR-6738-3p 0 1 0
chr17:43015762|43015884 hsa-miR-5587-3p 1 1 0
chr17:43015762|43015884 hsa-miR-1207-5p 1 1 0
chr17:43015762|43015884 hsa-miR-1233-5p 1 0 0
chr17:43015762|43015884 hsa-miR-1273h-5p 1 0 0
chr17:43015762|43015884 hsa-miR-6778-5p 1 0 0
chr17:43015762|43015884 hsa-miR-1343-5p 1 0 0
chr17:43015762|43015884 hsa-miR-6726-5p 1 0 0
chr17:43015762|43015884 hsa-miR-6754-5p 0 1 0
chr17:43015762|43015884 hsa-miR-6851-5p 1 0 0
chr17:43015762|43015884 hsa-miR-6763-5p 1 0 0
chr17:43015762|43015884 hsa-miR-6779-5p 1 0 0
chr17:43015762|43015884 hsa-miR-6780a-5p 1 0 0
chr17:43015762|43015884 hsa-miR-4728-5p 0 1 0
chr17:43015762|43015884 hsa-miR-5196-5p 1 0 0
chr17:43015762|43015884 hsa-miR-4745-5p 1 0 0
chr17:43015762|43015884 hsa-miR-6883-5p 0 1 0
chr17:43015762|43015884 hsa-miR-6889-5p 1 0 0
chr17:43015762|43015884 hsa-miR-10396a-3p 1 0 0
chr17:43015762|43015884 hsa-miR-6799-3p 0 1 0
chr17:43015762|43015884 hsa-miR-1271-3p 1 0 0
chr17:43015762|43015884 hsa-miR-6773-5p 0 1 0
chr17:43015762|43015884 hsa-miR-4747-5p 1 0 0
chr17:43015762|43015884 hsa-miR-6724-5p 1 1 0
chr17:43015762|43015884 hsa-miR-6791-5p 1 0 0
chr17:43015762|43015884 hsa-miR-3085-3p 0 1 0
chr17:43015762|43015884 hsa-miR-4756-5p 0 1 0
chr17:43015762|43015884 hsa-miR-6504-5p 1 0 0
chr17:43015762|43015884 hsa-miR-7162-5p 0 1 0
chr17:43015762|43015884 hsa-miR-3913-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:43015762|43015884
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence LAQKQHSRPGERVGAGSSRPPSDPPCRLGRAQTSKWSLPN
Nucleotide Sequence TTGGCACAAAAGCAGCACAGCAGGCCCGGGGAAAGGGTGGGGGCAGGAAGCAGCCGGCCTCCCTCTGACCCTCCCTGTCGCCTTGGCAGGGCCCAGACATCCAAATGGTCACTTCCCAAC
CircID chr17:43015762|43015884
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MGSDHLDVWALPRRQGGSEGGRLLPAPTLSPGLLCCFCAK
Nucleotide Sequence TTGGGAAGTGACCATTTGGATGTCTGGGCCCTGCCAAGGCGACAGGGAGGGTCAGAGGGAGGCCGGCTGCTTCCTGCCCCCACCCTTTCCCCGGGCCTGCTGTGCTGCTTTTGTGCCAAG
CircID chr17:43015762|43015884
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MSGPCQGDREGQREAGCFLPPPFPRACCAAFVP
Nucleotide Sequence ATGTCTGGGCCCTGCCAAGGCGACAGGGAGGGTCAGAGGGAGGCCGGCTGCTTCCTGCCCCCACCCTTTCCCCGGGCCTGCTGTGCTGCTTTTGTGCCA
CircID chr17:43015762|43015884
ORF Type ORF4
Protein Length 32
Nucleotide Length 96
Protein Sequence MGPAKATGRVRGRPAASCPHPFPGPAVLLLCQ
Nucleotide Sequence CTGGGCCCTGCCAAGGCGACAGGGAGGGTCAGAGGGAGGCCGGCTGCTTCCTGCCCCCACCCTTTCCCCGGGCCTGCTGTGCTGCTTTTGTGCCAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab