CircRNA Information

General Information
circRNA Basic Information
CircID chr17:43193211|43193448
Strand +
CircType exon
Host Gene ENSG00000188554.12;
Algorism CIRI2;
Sequence TCCACAGATACAACTCCCACATGGCCGGCCTTGAGGCAGGGAACCAAAACATCCTTCTTTTCTGTGGAAGCCAAAGTCAGGTTTCCCCACATGAACTTGAGCTGAAAAGAACAGTAAGAAGAGAAAGCAAGCTTGTCAGCTGAGCACTCTGCCACTTCAAATCACCTCATCTTTGCATTTTGTGGGAAAAATTACCTTTGTGTCTGCACTCCACTTTACATTTCCTGTATTTTTCATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:43193211|43193448 hsa-miR-17-5p 0 0 1
chr17:43193211|43193448 hsa-miR-17-3p 0 0 1
chr17:43193211|43193448 hsa-miR-20a-5p 0 0 1
chr17:43193211|43193448 hsa-miR-20a-3p 0 0 1
chr17:43193211|43193448 hsa-miR-93-5p 0 0 1
chr17:43193211|43193448 hsa-miR-93-3p 0 0 1
chr17:43193211|43193448 hsa-miR-106a-5p 0 0 1
chr17:43193211|43193448 hsa-miR-106a-3p 0 0 1
chr17:43193211|43193448 hsa-miR-122-5p 0 0 1
chr17:43193211|43193448 hsa-miR-122-3p 0 0 1
chr17:43193211|43193448 hsa-miR-106b-5p 0 0 1
chr17:43193211|43193448 hsa-miR-106b-3p 0 0 1
chr17:43193211|43193448 hsa-miR-20b-5p 0 0 1
chr17:43193211|43193448 hsa-miR-20b-3p 0 0 1
chr17:43193211|43193448 hsa-miR-452-5p 0 0 1
chr17:43193211|43193448 hsa-miR-452-3p 0 0 1
chr17:43193211|43193448 hsa-miR-519d-5p 0 0 1
chr17:43193211|43193448 hsa-miR-519d-3p 0 0 1
chr17:43193211|43193448 hsa-miR-527 0 0 1
chr17:43193211|43193448 hsa-miR-573 0 0 1
chr17:43193211|43193448 hsa-miR-659-5p 0 0 1
chr17:43193211|43193448 hsa-miR-659-3p 0 0 1
chr17:43193211|43193448 hsa-miR-1236-5p 0 0 1
chr17:43193211|43193448 hsa-miR-1236-3p 0 0 1
chr17:43193211|43193448 hsa-miR-1206 0 0 1
chr17:43193211|43193448 hsa-miR-548m 0 0 1
chr17:43193211|43193448 hsa-miR-1265 0 0 1
chr17:43193211|43193448 hsa-miR-491-5p 0 1 1
chr17:43193211|43193448 hsa-miR-299-3p 0 0 1
chr17:43193211|43193448 hsa-miR-1207-3p 0 0 1
chr17:43193211|43193448 hsa-miR-188-3p 0 1 1
chr17:43193211|43193448 hsa-miR-518a-5p 0 0 1
chr17:43193211|43193448 hsa-miR-590-3p 0 0 1
chr17:43193211|43193448 hsa-miR-1260 0 0 1
chr17:43193211|43193448 hsa-miR-1274a 0 0 1
chr17:43193211|43193448 hsa-miR-206 0 1 0
chr17:43193211|43193448 hsa-miR-759 0 1 0
chr17:43193211|43193448 hsa-miR-2110 0 1 0
chr17:43193211|43193448 hsa-miR-4307 0 1 0
chr17:43193211|43193448 hsa-miR-3936 1 0 0
chr17:43193211|43193448 hsa-miR-4657 1 0 0
chr17:43193211|43193448 hsa-miR-4689 1 0 0
chr17:43193211|43193448 hsa-miR-5093 0 1 0
chr17:43193211|43193448 hsa-miR-5572 1 0 0
chr17:43193211|43193448 hsa-miR-6134 0 1 0
chr17:43193211|43193448 hsa-miR-12115 0 1 0
chr17:43193211|43193448 hsa-miR-6734-5p 1 0 0
chr17:43193211|43193448 hsa-miR-504-3p 1 1 0
chr17:43193211|43193448 hsa-miR-5187-5p 0 1 0
chr17:43193211|43193448 hsa-miR-6089 1 0 0
chr17:43193211|43193448 hsa-miR-3192-5p 0 1 0
chr17:43193211|43193448 hsa-miR-6890-5p 1 0 0
chr17:43193211|43193448 hsa-miR-1915-5p 1 0 0
chr17:43193211|43193448 hsa-miR-6732-5p 1 0 0
chr17:43193211|43193448 hsa-miR-942-5p 1 0 0
chr17:43193211|43193448 hsa-miR-6514-5p 1 0 0
chr17:43193211|43193448 hsa-miR-642b-5p 0 1 0
chr17:43193211|43193448 hsa-miR-6717-5p 1 0 0
chr17:43193211|43193448 hsa-miR-34a-5p 1 0 0
chr17:43193211|43193448 hsa-miR-4796-3p 0 1 0
chr17:43193211|43193448 hsa-miR-4763-3p 1 0 0
chr17:43193211|43193448 hsa-miR-6812-5p 1 1 0
chr17:43193211|43193448 hsa-miR-6819-5p 1 0 0
chr17:43193211|43193448 hsa-miR-6851-5p 1 0 0
chr17:43193211|43193448 hsa-miR-6879-5p 1 0 0
chr17:43193211|43193448 hsa-miR-6780b-5p 1 0 0
chr17:43193211|43193448 hsa-miR-6831-5p 1 0 0
chr17:43193211|43193448 hsa-miR-4769-5p 1 0 0
chr17:43193211|43193448 hsa-miR-6511b-5p 1 0 0
chr17:43193211|43193448 hsa-miR-4664-5p 1 0 0
chr17:43193211|43193448 hsa-miR-34c-5p 1 0 0
chr17:43193211|43193448 hsa-miR-130b-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:43193211|43193448
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MSAEHSATSNHLIFAFCGKNYLCVCTPLYISCIFH
Nucleotide Sequence TTGTCAGCTGAGCACTCTGCCACTTCAAATCACCTCATCTTTGCATTTTGTGGGAAAAATTACCTTTGTGTCTGCACTCCACTTTACATTTCCTGTATTTTTCAT
CircID chr17:43193211|43193448
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MSTLPLQITSSLHFVGKITFVSALHFTFPVFFI
Nucleotide Sequence CTGAGCACTCTGCCACTTCAAATCACCTCATCTTTGCATTTTGTGGGAAAAATTACCTTTGTGTCTGCACTCCACTTTACATTTCCTGTATTTTTCATC
CircID chr17:43193211|43193448
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MAGLEAGNQNILLFCGSQSQVSPHELELKRTVRRESKLVS
Nucleotide Sequence ATGGCCGGCCTTGAGGCAGGGAACCAAAACATCCTTCTTTTCTGTGGAAGCCAAAGTCAGGTTTCCCCACATGAACTTGAGCTGAAAAGAACAGTAAGAAGAGAAAGCAAGCTTGTCAGCTGA
CircID chr17:43193211|43193448
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MKWQSAQLTSLLSLLTVLFSSSSCGET
Nucleotide Sequence TTGAAGTGGCAGAGTGCTCAGCTGACAAGCTTGCTTTCTCTTCTTACTGTTCTTTTCAGCTCAAGTTCATGTGGGGAAACCTGA
CircID chr17:43193211|43193448
ORF Type ORF5
Protein Length 26
Nucleotide Length 81
Protein Sequence MKNTGNVKWSADTKVIFPTKCKDEVI
Nucleotide Sequence ATGAAAAATACAGGAAATGTAAAGTGGAGTGCAGACACAAAGGTAATTTTTCCCACAAAATGCAAAGATGAGGTGATTTGA
CircID chr17:43193211|43193448
ORF Type ORF6
Protein Length 38
Nucleotide Length 114
Protein Sequence MFFSAQVHVGKPDFGFHRKEGCFGSLPQGRPCGSCICG
Nucleotide Sequence CTGTTCTTTTCAGCTCAAGTTCATGTGGGGAAACCTGACTTTGGCTTCCACAGAAAAGAAGGATGTTTTGGTTCCCTGCCTCAAGGCCGGCCATGTGGGAGTTGTATCTGTGGA
CircID chr17:43193211|43193448
ORF Type ORF7
Protein Length 30
Nucleotide Length 90
Protein Sequence MWGNLTLASTEKKDVLVPCLKAGHVGVVSV
Nucleotide Sequence ATGTGGGGAAACCTGACTTTGGCTTCCACAGAAAAGAAGGATGTTTTGGTTCCCTGCCTCAAGGCCGGCCATGTGGGAGTTGTATCTGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab