CircRNA Information

General Information
circRNA Basic Information
CircID chr17:43883015|43883310
Strand +
CircType exon
Host Gene ENSG00000108852.13;
Algorism CIRI2;
Sequence AACAACCTGGAGCTGGTGCAGGAGATCCTGCGGGACCTGGCGCAGCTGGCTGAGCAGAGCAGCACAGCCGCCGAGCTGGCCCACATCCTCCAGGAGCCCCACTTCCAGGTTCCTGGCTGCTAGGGCTGGGGTGAGGGAGCAGGAGGTGGGTGGACTGGGGCATGCTGCTGTTGGATGGGCCAGCAGGAAGTTGGATCTGGGATGGGAAGAGACCCGGGACACTGCCCCATTGTCCCTTCTCTTCCCACCACCCCCCAGTCCCTCCTGGAGACGCACGACTCTGTGGCCTCAAAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:43883015|43883310 hsa-miR-15a-5p 0 0 1
chr17:43883015|43883310 hsa-miR-15a-3p 0 0 1
chr17:43883015|43883310 hsa-miR-107 0 1 1
chr17:43883015|43883310 hsa-miR-34a-5p 0 0 1
chr17:43883015|43883310 hsa-miR-34a-3p 0 0 1
chr17:43883015|43883310 hsa-miR-15b-5p 0 0 1
chr17:43883015|43883310 hsa-miR-15b-3p 0 0 1
chr17:43883015|43883310 hsa-miR-195-5p 0 0 1
chr17:43883015|43883310 hsa-miR-195-3p 0 0 1
chr17:43883015|43883310 hsa-miR-370-5p 0 0 1
chr17:43883015|43883310 hsa-miR-370-3p 0 0 1
chr17:43883015|43883310 hsa-miR-424-5p 0 0 1
chr17:43883015|43883310 hsa-miR-424-3p 0 0 1
chr17:43883015|43883310 hsa-miR-449a 0 0 1
chr17:43883015|43883310 hsa-miR-497-5p 0 0 1
chr17:43883015|43883310 hsa-miR-497-3p 0 0 1
chr17:43883015|43883310 hsa-miR-503-5p 0 0 1
chr17:43883015|43883310 hsa-miR-503-3p 0 0 1
chr17:43883015|43883310 hsa-miR-608 0 1 1
chr17:43883015|43883310 hsa-miR-619-5p 0 0 1
chr17:43883015|43883310 hsa-miR-619-3p 0 0 1
chr17:43883015|43883310 hsa-miR-637 0 1 1
chr17:43883015|43883310 hsa-miR-646 0 0 1
chr17:43883015|43883310 hsa-miR-449b-5p 0 0 1
chr17:43883015|43883310 hsa-miR-449b-3p 0 0 1
chr17:43883015|43883310 hsa-miR-766-5p 0 0 1
chr17:43883015|43883310 hsa-miR-766-3p 0 0 1
chr17:43883015|43883310 hsa-miR-765 0 0 1
chr17:43883015|43883310 hsa-miR-541-5p 0 0 1
chr17:43883015|43883310 hsa-miR-541-3p 0 0 1
chr17:43883015|43883310 hsa-miR-665 0 1 1
chr17:43883015|43883310 hsa-miR-873-5p 0 0 1
chr17:43883015|43883310 hsa-miR-873-3p 0 0 1
chr17:43883015|43883310 hsa-miR-1226-5p 0 0 1
chr17:43883015|43883310 hsa-miR-1226-3p 0 0 1
chr17:43883015|43883310 hsa-miR-1236-5p 0 0 1
chr17:43883015|43883310 hsa-miR-1236-3p 0 0 1
chr17:43883015|43883310 hsa-miR-1293 0 1 1
chr17:43883015|43883310 hsa-miR-1304-5p 0 0 1
chr17:43883015|43883310 hsa-miR-1304-3p 0 0 1
chr17:43883015|43883310 hsa-miR-1265 0 1 1
chr17:43883015|43883310 hsa-miR-1307-5p 0 0 1
chr17:43883015|43883310 hsa-miR-1307-3p 0 0 1
chr17:43883015|43883310 hsa-miR-486-3p 0 0 1
chr17:43883015|43883310 hsa-miR-767-5p 0 0 1
chr17:43883015|43883310 hsa-miR-299-3p 0 0 1
chr17:43883015|43883310 hsa-miR-490-3p 0 1 1
chr17:43883015|43883310 hsa-miR-654-5p 0 0 1
chr17:43883015|43883310 hsa-miR-1224-3p 1 1 1
chr17:43883015|43883310 hsa-miR-767-3p 0 0 1
chr17:43883015|43883310 hsa-miR-455-3p 0 0 1
chr17:43883015|43883310 hsa-miR-34c-5p 0 0 1
chr17:43883015|43883310 hsa-miR-103 0 0 1
chr17:43883015|43883310 hsa-miR-16 0 0 1
chr17:43883015|43883310 hsa-miR-1295a 1 0 0
chr17:43883015|43883310 hsa-miR-1976 0 1 0
chr17:43883015|43883310 hsa-miR-3154 0 1 0
chr17:43883015|43883310 hsa-miR-4322 0 1 0
chr17:43883015|43883310 hsa-miR-4260 1 0 0
chr17:43883015|43883310 hsa-miR-4265 0 1 0
chr17:43883015|43883310 hsa-miR-4267 0 1 0
chr17:43883015|43883310 hsa-miR-4449 0 1 0
chr17:43883015|43883310 hsa-miR-4462 1 0 0
chr17:43883015|43883310 hsa-miR-4739 1 0 0
chr17:43883015|43883310 hsa-miR-5193 1 1 0
chr17:43883015|43883310 hsa-miR-7515 0 1 0
chr17:43883015|43883310 hsa-miR-7974 1 1 0
chr17:43883015|43883310 hsa-miR-8073 0 1 0
chr17:43883015|43883310 hsa-miR-11400 0 1 0
chr17:43883015|43883310 hsa-miR-139-5p 1 0 0
chr17:43883015|43883310 hsa-miR-3194-3p 0 1 0
chr17:43883015|43883310 hsa-miR-3157-5p 0 1 0
chr17:43883015|43883310 hsa-miR-4726-3p 1 0 0
chr17:43883015|43883310 hsa-miR-6765-5p 1 0 0
chr17:43883015|43883310 hsa-miR-6894-5p 0 1 0
chr17:43883015|43883310 hsa-miR-6720-5p 0 1 0
chr17:43883015|43883310 hsa-miR-6089 1 0 0
chr17:43883015|43883310 hsa-miR-6875-3p 0 1 0
chr17:43883015|43883310 hsa-miR-7845-5p 0 1 0
chr17:43883015|43883310 hsa-miR-23a-5p 0 1 0
chr17:43883015|43883310 hsa-miR-6798-5p 1 0 0
chr17:43883015|43883310 hsa-miR-6770-5p 0 1 0
chr17:43883015|43883310 hsa-miR-3130-3p 0 1 0
chr17:43883015|43883310 hsa-miR-6782-5p 0 1 0
chr17:43883015|43883310 hsa-miR-6728-3p 0 1 0
chr17:43883015|43883310 hsa-miR-4640-5p 0 1 0
chr17:43883015|43883310 hsa-miR-103a-3p 0 1 0
chr17:43883015|43883310 hsa-miR-149-3p 0 1 0
chr17:43883015|43883310 hsa-miR-194-3p 0 1 0
chr17:43883015|43883310 hsa-miR-4707-5p 1 0 0
chr17:43883015|43883310 hsa-miR-1237-3p 1 1 0
chr17:43883015|43883310 hsa-miR-7106-3p 0 1 0
chr17:43883015|43883310 hsa-miR-6499-3p 0 1 0
chr17:43883015|43883310 hsa-miR-4758-3p 1 0 0
chr17:43883015|43883310 hsa-miR-1251-3p 1 1 0
chr17:43883015|43883310 hsa-miR-6741-3p 1 0 0
chr17:43883015|43883310 hsa-miR-3074-5p 0 1 0
chr17:43883015|43883310 hsa-miR-4649-3p 1 0 0
chr17:43883015|43883310 hsa-miR-1296-3p 0 1 0
chr17:43883015|43883310 hsa-miR-1229-3p 0 1 0
chr17:43883015|43883310 hsa-miR-4717-5p 0 1 0
chr17:43883015|43883310 hsa-miR-4433b-5p 1 0 0
chr17:43883015|43883310 hsa-miR-3675-5p 0 1 0
chr17:43883015|43883310 hsa-miR-6733-3p 0 1 0
chr17:43883015|43883310 hsa-miR-6769b-5p 0 1 0
chr17:43883015|43883310 hsa-miR-6778-5p 0 1 0
chr17:43883015|43883310 hsa-miR-6752-5p 0 1 0
chr17:43883015|43883310 hsa-miR-6842-5p 0 1 0
chr17:43883015|43883310 hsa-miR-7110-5p 1 1 0
chr17:43883015|43883310 hsa-miR-1249-5p 0 1 0
chr17:43883015|43883310 hsa-miR-6797-5p 0 1 0
chr17:43883015|43883310 hsa-miR-4685-3p 0 1 0
chr17:43883015|43883310 hsa-miR-4745-5p 0 1 0
chr17:43883015|43883310 hsa-miR-6856-5p 0 1 0
chr17:43883015|43883310 hsa-miR-6785-5p 0 1 0
chr17:43883015|43883310 hsa-miR-6762-5p 1 0 0
chr17:43883015|43883310 hsa-miR-6893-3p 1 1 0
chr17:43883015|43883310 hsa-miR-6784-3p 1 1 0
chr17:43883015|43883310 hsa-miR-6862-3p 1 1 0
chr17:43883015|43883310 hsa-miR-6805-3p 0 1 0
chr17:43883015|43883310 hsa-miR-6810-3p 1 0 0
chr17:43883015|43883310 hsa-miR-4524a-5p 0 1 0
chr17:43883015|43883310 hsa-miR-4524b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:43883015|43883310
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MELVQEILRDLAQLAEQSSTAAELAHILQEPHFQVPGC
Nucleotide Sequence CTGGAGCTGGTGCAGGAGATCCTGCGGGACCTGGCGCAGCTGGCTGAGCAGAGCAGCACAGCCGCCGAGCTGGCCCACATCCTCCAGGAGCCCCACTTCCAGGTTCCTGGCTGCTAG
CircID chr17:43883015|43883310
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MGQQEVGSGMGRDPGHCPIVPSLPTTPQSLLETHDSVASK
Nucleotide Sequence ATGGGCCAGCAGGAAGTTGGATCTGGGATGGGAAGAGACCCGGGACACTGCCCCATTGTCCCTTCTCTTCCCACCACCCCCCAGTCCCTCCTGGAGACGCACGACTCTGTGGCCTCAAAG
CircID chr17:43883015|43883310
ORF Type ORF3
Protein Length 82
Nucleotide Length 246
Protein Sequence MSRAAQPPSWPTSSRSPTSRFLAARAGVREQEVGGLGHAAVGWASRKLDLGWEETRDTAPLSLLFPPPPSPSWRRTTLWPQR
Nucleotide Sequence CTGAGCAGAGCAGCACAGCCGCCGAGCTGGCCCACATCCTCCAGGAGCCCCACTTCCAGGTTCCTGGCTGCTAGGGCTGGGGTGAGGGAGCAGGAGGTGGGTGGACTGGGGCATGCTGCTGTTGGATGGGCCAGCAGGAAGTTGGATCTGGGATGGGAAGAGACCCGGGACACTGCCCCATTGTCCCTTCTCTTCCCACCACCCCCCAGTCCCTCCTGGAGACGCACGACTCTGTGGCCTCAAAGA
CircID chr17:43883015|43883310
ORF Type ORF4
Protein Length 45
Nucleotide Length 135
Protein Sequence MLLLDGPAGSWIWDGKRPGTLPHCPFSSHHPPVPPGDARLCGLKD
Nucleotide Sequence ATGCTGCTGTTGGATGGGCCAGCAGGAAGTTGGATCTGGGATGGGAAGAGACCCGGGACACTGCCCCATTGTCCCTTCTCTTCCCACCACCCCCCAGTCCCTCCTGGAGACGCACGACTCTGTGGCCTCAAAGAC
CircID chr17:43883015|43883310
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MGQCPGSLPIPDPTSCWPIQQQHAPVHPPPAPSPQP
Nucleotide Sequence ATGGGGCAGTGTCCCGGGTCTCTTCCCATCCCAGATCCAACTTCCTGCTGGCCCATCCAACAGCAGCATGCCCCAGTCCACCCACCTCCTGCTCCCTCACCCCAGCCCTAG
CircID chr17:43883015|43883310
ORF Type ORF6
Protein Length 28
Nucleotide Length 84
Protein Sequence MWASSAAVLLCSASCARSRRISCTSSRL
Nucleotide Sequence ATGTGGGCCAGCTCGGCGGCTGTGCTGCTCTGCTCAGCCAGCTGCGCCAGGTCCCGCAGGATCTCCTGCACCAGCTCCAGGTTG
CircID chr17:43883015|43883310
ORF Type ORF7
Protein Length 97
Nucleotide Length 291
Protein Sequence MRPQSRASPGGTGGWWEEKGQWGSVPGLFPSQIQLPAGPSNSSMPQSTHLLLPHPSPSSQEPGSGAPGGCGPARRLCCSAQPAAPGPAGSPAPAPGC
Nucleotide Sequence TTGAGGCCACAGAGTCGTGCGTCTCCAGGAGGGACTGGGGGGTGGTGGGAAGAGAAGGGACAATGGGGCAGTGTCCCGGGTCTCTTCCCATCCCAGATCCAACTTCCTGCTGGCCCATCCAACAGCAGCATGCCCCAGTCCACCCACCTCCTGCTCCCTCACCCCAGCCCTAGCAGCCAGGAACCTGGAAGTGGGGCTCCTGGAGGATGTGGGCCAGCTCGGCGGCTGTGCTGCTCTGCTCAGCCAGCTGCGCCAGGTCCCGCAGGATCTCCTGCACCAGCTCCAGGTTGT
CircID chr17:43883015|43883310
ORF Type ORF8
Protein Length 86
Nucleotide Length 258
Protein Sequence MGGGGKRRDNGAVSRVSSHPRSNFLLAHPTAACPSPPTSCSLTPALAARNLEVGLLEDVGQLGGCAALLSQLRQVPQDLLHQLQVV
Nucleotide Sequence CTGGGGGGTGGTGGGAAGAGAAGGGACAATGGGGCAGTGTCCCGGGTCTCTTCCCATCCCAGATCCAACTTCCTGCTGGCCCATCCAACAGCAGCATGCCCCAGTCCACCCACCTCCTGCTCCCTCACCCCAGCCCTAGCAGCCAGGAACCTGGAAGTGGGGCTCCTGGAGGATGTGGGCCAGCTCGGCGGCTGTGCTGCTCTGCTCAGCCAGCTGCGCCAGGTCCCGCAGGATCTCCTGCACCAGCTCCAGGTTGTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab