CircRNA Information

General Information
circRNA Basic Information
CircID chr17:44091429|44091740
Strand -
CircType exon
Host Gene ENSG00000108840.14;
Algorism CIRI2;
Sequence CCTGCCGCAGGGACTGGAGGGCCTGCCTCTCGGCCTCCTGCTGTGTCGACAGCTTCGGGGAGGCCTGGGGGGTGAAGGGAGGGGCTTATACAGCCTCAGTCCTGCCAACTTTGGACTAGCATCCCCATCTACCCACTATCTACCCCCCAAGCTCTGGGTAGGGCCAACAGATCTCCCTTAGGGCCTTGGAAGGGGAAAACCCCAGCTGGGGGCATGCAGGACCTGTGACCTCAACACCAGAGGGAAGATGGGGTATATGCCCTGTACTTACAGTGAGGTGTGAGTTGGTGACAGTGACCGTGGCCTGCAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:44091429|44091740 hsa-miR-214-5p 0 0 1
chr17:44091429|44091740 hsa-miR-214-3p 0 0 1
chr17:44091429|44091740 hsa-miR-328-5p 0 0 1
chr17:44091429|44091740 hsa-miR-328-3p 0 0 1
chr17:44091429|44091740 hsa-miR-412-5p 0 0 1
chr17:44091429|44091740 hsa-miR-412-3p 0 0 1
chr17:44091429|44091740 hsa-miR-554 0 0 1
chr17:44091429|44091740 hsa-miR-568 0 0 1
chr17:44091429|44091740 hsa-miR-940 0 1 1
chr17:44091429|44091740 hsa-miR-1228-5p 0 0 1
chr17:44091429|44091740 hsa-miR-1228-3p 0 0 1
chr17:44091429|44091740 hsa-miR-1205 0 0 1
chr17:44091429|44091740 hsa-miR-1208 0 0 1
chr17:44091429|44091740 hsa-miR-1286 0 1 1
chr17:44091429|44091740 hsa-miR-1291 0 0 1
chr17:44091429|44091740 hsa-miR-1267 0 0 1
chr17:44091429|44091740 hsa-miR-1275 0 0 1
chr17:44091429|44091740 hsa-miR-1827 0 0 1
chr17:44091429|44091740 hsa-miR-485-5p 0 0 1
chr17:44091429|44091740 hsa-miR-361-3p 0 1 1
chr17:44091429|44091740 hsa-miR-1207-3p 0 0 1
chr17:44091429|44091740 hsa-miR-513a-5p 0 0 1
chr17:44091429|44091740 hsa-miR-1207-5p 0 0 1
chr17:44091429|44091740 hsa-miR-342-3p 0 0 1
chr17:44091429|44091740 hsa-miR-642 0 0 1
chr17:44091429|44091740 hsa-miR-220c 0 0 1
chr17:44091429|44091740 hsa-miR-220a 0 0 1
chr17:44091429|44091740 hsa-miR-3132 0 1 0
chr17:44091429|44091740 hsa-miR-3138 1 0 0
chr17:44091429|44091740 hsa-miR-3142 0 1 0
chr17:44091429|44091740 hsa-miR-3169 0 1 0
chr17:44091429|44091740 hsa-miR-4290 0 1 0
chr17:44091429|44091740 hsa-miR-4453 0 1 0
chr17:44091429|44091740 hsa-miR-4683 0 1 0
chr17:44091429|44091740 hsa-miR-4734 1 1 0
chr17:44091429|44091740 hsa-miR-6165 0 1 0
chr17:44091429|44091740 hsa-miR-8086 0 1 0
chr17:44091429|44091740 hsa-miR-141-5p 0 1 0
chr17:44091429|44091740 hsa-miR-4747-3p 1 0 0
chr17:44091429|44091740 hsa-miR-4700-3p 1 0 0
chr17:44091429|44091740 hsa-miR-6861-5p 1 1 0
chr17:44091429|44091740 hsa-miR-1972 0 1 0
chr17:44091429|44091740 hsa-miR-6822-3p 1 0 0
chr17:44091429|44091740 hsa-miR-6510-5p 0 1 0
chr17:44091429|44091740 hsa-miR-6089 0 1 0
chr17:44091429|44091740 hsa-miR-4695-5p 0 1 0
chr17:44091429|44091740 hsa-miR-4722-5p 0 1 0
chr17:44091429|44091740 hsa-miR-4761-3p 0 1 0
chr17:44091429|44091740 hsa-miR-197-5p 1 1 0
chr17:44091429|44091740 hsa-miR-3189-5p 1 1 0
chr17:44091429|44091740 hsa-miR-6798-5p 1 0 0
chr17:44091429|44091740 hsa-miR-7109-3p 0 1 0
chr17:44091429|44091740 hsa-miR-6835-5p 0 1 0
chr17:44091429|44091740 hsa-miR-7109-5p 0 1 0
chr17:44091429|44091740 hsa-miR-1229-5p 0 1 0
chr17:44091429|44091740 hsa-miR-1304-3p 0 1 0
chr17:44091429|44091740 hsa-miR-6769a-3p 0 1 0
chr17:44091429|44091740 hsa-miR-3922-5p 1 0 0
chr17:44091429|44091740 hsa-miR-2114-5p 0 1 0
chr17:44091429|44091740 hsa-miR-6887-3p 0 1 0
chr17:44091429|44091740 hsa-miR-4727-3p 0 1 0
chr17:44091429|44091740 hsa-miR-6778-3p 0 1 0
chr17:44091429|44091740 hsa-miR-6886-3p 0 1 0
chr17:44091429|44091740 hsa-miR-4749-3p 0 1 0
chr17:44091429|44091740 hsa-miR-4649-3p 0 1 0
chr17:44091429|44091740 hsa-miR-875-5p 0 1 0
chr17:44091429|44091740 hsa-miR-6760-3p 0 1 0
chr17:44091429|44091740 hsa-miR-6802-3p 0 1 0
chr17:44091429|44091740 hsa-miR-4717-5p 0 1 0
chr17:44091429|44091740 hsa-miR-6750-3p 0 1 0
chr17:44091429|44091740 hsa-miR-6803-5p 1 0 0
chr17:44091429|44091740 hsa-miR-3127-3p 0 1 0
chr17:44091429|44091740 hsa-miR-4685-3p 0 1 0
chr17:44091429|44091740 hsa-miR-4755-5p 0 1 0
chr17:44091429|44091740 hsa-miR-6754-3p 0 1 0
chr17:44091429|44091740 hsa-miR-6836-5p 1 0 0
chr17:44091429|44091740 hsa-miR-4649-5p 0 1 0
chr17:44091429|44091740 hsa-miR-4685-5p 1 1 0
chr17:44091429|44091740 hsa-miR-939-5p 1 0 0
chr17:44091429|44091740 hsa-miR-6756-3p 1 1 0
chr17:44091429|44091740 hsa-miR-6837-5p 1 0 0
chr17:44091429|44091740 hsa-miR-6819-3p 0 1 0
chr17:44091429|44091740 hsa-miR-6891-3p 0 1 0
chr17:44091429|44091740 hsa-miR-10394-5p 0 1 0
chr17:44091429|44091740 hsa-miR-4691-5p 0 1 0
chr17:44091429|44091740 hsa-miR-3619-5p 0 1 0
chr17:44091429|44091740 hsa-miR-5006-3p 0 1 0
chr17:44091429|44091740 hsa-miR-6824-3p 0 1 0
chr17:44091429|44091740 hsa-miR-370-5p 0 1 0
chr17:44091429|44091740 hsa-miR-6811-5p 0 1 0
chr17:44091429|44091740 hsa-miR-1912-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:44091429|44091740
ORF Type ORF1
Protein Length 59
Nucleotide Length 180
Protein Sequence LPQGLEGLPLGLLLCRQLRGGLGGEGRGLYSLSPANFGLASPSTHYLPPKLWVGPTDLP
Nucleotide Sequence CTGCCGCAGGGACTGGAGGGCCTGCCTCTCGGCCTCCTGCTGTGTCGACAGCTTCGGGGAGGCCTGGGGGGTGAAGGGAGGGGCTTATACAGCCTCAGTCCTGCCAACTTTGGACTAGCATCCCCATCTACCCACTATCTACCCCCCAAGCTCTGGGTAGGGCCAACAGATCTCCCTTAG
CircID chr17:44091429|44091740
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MGACRTCDLNTRGKMGYMPCTYSEV
Nucleotide Sequence CTGGGGGCATGCAGGACCTGTGACCTCAACACCAGAGGGAAGATGGGGTATATGCCCTGTACTTACAGTGAGGTGTGA
CircID chr17:44091429|44091740
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MEGENPSWGHAGPVTSTPEGRWGICPVLTVRCELVTVTVACS
Nucleotide Sequence TTGGAAGGGGAAAACCCCAGCTGGGGGCATGCAGGACCTGTGACCTCAACACCAGAGGGAAGATGGGGTATATGCCCTGTACTTACAGTGAGGTGTGAGTTGGTGACAGTGACCGTGGCCTGCAGC
CircID chr17:44091429|44091740
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MAGLRLYKPLPSPPRPPRSCRHSRRPRGRPSSPCGR
Nucleotide Sequence TTGGCAGGACTGAGGCTGTATAAGCCCCTCCCTTCACCCCCCAGGCCTCCCCGAAGCTGTCGACACAGCAGGAGGCCGAGAGGCAGGCCCTCCAGTCCCTGCGGCAGG
CircID chr17:44091429|44091740
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MPPAGVFPFQGPKGDLLALPRAWGVDSG
Nucleotide Sequence ATGCCCCCAGCTGGGGTTTTCCCCTTCCAAGGCCCTAAGGGAGATCTGTTGGCCCTACCCAGAGCTTGGGGGGTAGATAGTGGGTAG
CircID chr17:44091429|44091740
ORF Type ORF6
Protein Length 56
Nucleotide Length 171
Protein Sequence LQATVTVTNSHLTVSTGHIPHLPSGVEVTGPACPQLGFSPSKALREICWPYPELGG
Nucleotide Sequence CTGCAGGCCACGGTCACTGTCACCAACTCACACCTCACTGTAAGTACAGGGCATATACCCCATCTTCCCTCTGGTGTTGAGGTCACAGGTCCTGCATGCCCCCAGCTGGGGTTTTCCCCTTCCAAGGCCCTAAGGGAGATCTGTTGGCCCTACCCAGAGCTTGGGGGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab