CircRNA Information

General Information
circRNA Basic Information
CircID chr17:44351389|44351619
Strand +
CircType exon
Host Gene ENSG00000030582.15;
Algorism CIRI2;
Sequence AGGTACCCTTCTGCGTGTCACACGTAAACCCCGCGGGACAGCAGTGTATGTGGTCCTCACAGCACACAGCCTAGGGCAGATGAAGAAGGGCAGGTGGGCACTGGGGCCCGGCTGCCTGCCACACTGTGCTCAGCCCACCCACCCGCCACCCCTGGGTACCTGGGTAAAAGGGCAGCAGCCCCAGGCCCCCGACTGTAGACGGCAGCAGGTATAGCCATCTGGGCAGCTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:44351389|44351619 hsa-miR-22-5p 0 0 1
chr17:44351389|44351619 hsa-miR-22-3p 0 0 1
chr17:44351389|44351619 hsa-miR-370-5p 0 0 1
chr17:44351389|44351619 hsa-miR-370-3p 0 0 1
chr17:44351389|44351619 hsa-miR-558 -8 0 1
chr17:44351389|44351619 hsa-miR-608 -16 1 1
chr17:44351389|44351619 hsa-miR-626 -6 0 1
chr17:44351389|44351619 hsa-miR-629-5p 0 0 1
chr17:44351389|44351619 hsa-miR-629-3p 0 0 1
chr17:44351389|44351619 hsa-miR-645 -11 1 1
chr17:44351389|44351619 hsa-miR-661 -3 1 1
chr17:44351389|44351619 hsa-miR-298 0 0 1
chr17:44351389|44351619 hsa-miR-541-5p 0 0 1
chr17:44351389|44351619 hsa-miR-541-3p 0 0 1
chr17:44351389|44351619 hsa-miR-938 -6 0 1
chr17:44351389|44351619 hsa-miR-1293 -10 0 1
chr17:44351389|44351619 hsa-miR-1294 -14 0 1
chr17:44351389|44351619 hsa-miR-1248 -7 1 1
chr17:44351389|44351619 hsa-miR-1825 -15 1 1
chr17:44351389|44351619 hsa-miR-139-5p -5 0 1
chr17:44351389|44351619 hsa-miR-296-5p -9 0 1
chr17:44351389|44351619 hsa-miR-1224-5p -5 0 1
chr17:44351389|44351619 hsa-miR-654-5p -10 1 1
chr17:44351389|44351619 hsa-miR-1224-3p -4 1 1
chr17:44351389|44351619 hsa-miR-875-5p -1 0 1
chr17:44351389|44351619 hsa-miR-299-5p 0 0 1
chr17:44351389|44351619 hsa-miR-1207-5p -9 0 1
chr17:44351389|44351619 hsa-miR-324-3p -9 0 1
chr17:44351389|44351619 hsa-miR-542-3p 0 0 1
chr17:44351389|44351619 hsa-miR-128 0 0 1
chr17:44351389|44351619 hsa-miR-644 0 0 1
chr17:44351389|44351619 hsa-miR-886-3p 0 0 1
chr17:44351389|44351619 hsa-miR-663 0 0 1
chr17:44351389|44351619 hsa-miR-2861 -7 1 0
chr17:44351389|44351619 hsa-miR-4302 -9 1 0
chr17:44351389|44351619 hsa-miR-1587 -11 1 0
chr17:44351389|44351619 hsa-miR-4651 -21 1 0
chr17:44351389|44351619 hsa-miR-4656 -18 1 0
chr17:44351389|44351619 hsa-miR-4663 -7 1 0
chr17:44351389|44351619 hsa-miR-4686 -13 1 0
chr17:44351389|44351619 hsa-miR-4692 -6 1 0
chr17:44351389|44351619 hsa-miR-4751 -13 1 0
chr17:44351389|44351619 hsa-miR-7974 -14 1 0
chr17:44351389|44351619 hsa-miR-18a-3p -10 1 0
chr17:44351389|44351619 hsa-miR-4726-3p -10 1 0
chr17:44351389|44351619 hsa-miR-6762-3p -9 1 0
chr17:44351389|44351619 hsa-miR-6832-3p -8 1 0
chr17:44351389|44351619 hsa-miR-7108-5p -19 1 0
chr17:44351389|44351619 hsa-miR-6748-5p -16 1 0
chr17:44351389|44351619 hsa-miR-185-3p -6 1 0
chr17:44351389|44351619 hsa-miR-6829-5p -16 1 0
chr17:44351389|44351619 hsa-miR-6782-5p -19 1 0
chr17:44351389|44351619 hsa-miR-6852-5p -8 1 0
chr17:44351389|44351619 hsa-miR-6749-5p -16 1 0
chr17:44351389|44351619 hsa-miR-4778-3p -6 1 0
chr17:44351389|44351619 hsa-miR-6886-3p -14 1 0
chr17:44351389|44351619 hsa-miR-5088-3p -12 1 0
chr17:44351389|44351619 hsa-miR-3157-3p -10 1 0
chr17:44351389|44351619 hsa-miR-4677-3p -7 1 0
chr17:44351389|44351619 hsa-miR-6769b-5p -21 1 0
chr17:44351389|44351619 hsa-miR-6756-5p -22 1 0
chr17:44351389|44351619 hsa-miR-6769a-5p -14 1 0
chr17:44351389|44351619 hsa-miR-6803-5p -3 1 0
chr17:44351389|44351619 hsa-miR-6722-3p -20 1 0
chr17:44351389|44351619 hsa-miR-1915-3p -15 1 0
chr17:44351389|44351619 hsa-miR-3620-5p -19 1 0
chr17:44351389|44351619 hsa-miR-3187-5p -9 1 0
chr17:44351389|44351619 hsa-miR-6766-5p -10 1 0
chr17:44351389|44351619 hsa-miR-6893-3p -16 1 0
chr17:44351389|44351619 hsa-miR-485-3p -8 1 0
chr17:44351389|44351619 hsa-miR-487b-5p -9 1 0
chr17:44351389|44351619 hsa-miR-3144-3p -9 1 0
chr17:44351389|44351619 hsa-miR-487a-5p -15 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr17:44351389|44351619
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MPATLCSAHPPATPGYLGKRAAAPGPRL
Nucleotide Sequence CTGCCTGCCACACTGTGCTCAGCCCACCCACCCGCCACCCCTGGGTACCTGGGTAAAAGGGCAGCAGCCCCAGGCCCCCGACTGTAG

CircID chr17:44351389|44351619
ORF Type ORF2
Protein Length 67
Nucleotide Length 204
Protein Sequence MRVTRKPRGTAVYVVLTAHSLGQMKKGRWALGPGCLPHCAQPTHPPPLGTWVKGQQPQAPDCRRQQV
Nucleotide Sequence CTGCGTGTCACACGTAAACCCCGCGGGACAGCAGTGTATGTGGTCCTCACAGCACACAGCCTAGGGCAGATGAAGAAGGGCAGGTGGGCACTGGGGCCCGGCTGCCTGCCACACTGTGCTCAGCCCACCCACCCGCCACCCCTGGGTACCTGGGTAAAAGGGCAGCAGCCCCAGGCCCCCGACTGTAGACGGCAGCAGGTATAG

CircID chr17:44351389|44351619
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MPFFICPRLCAVRTTYTAVPRGLRVTRRRVP
Nucleotide Sequence CTGCCCTTCTTCATCTGCCCTAGGCTGTGTGCTGTGAGGACCACATACACTGCTGTCCCGCGGGGTTTACGTGTGACACGCAGAAGGGTACCT

CircID chr17:44351389|44351619
ORF Type ORF4
Protein Length 53
Nucleotide Length 162
Protein Sequence MAIPAAVYSRGPGAAALLPRYPGVAGGWAEHSVAGSRAPVPTCPSSSALGCVL
Nucleotide Sequence ATGGCTATACCTGCTGCCGTCTACAGTCGGGGGCCTGGGGCTGCTGCCCTTTTACCCAGGTACCCAGGGGTGGCGGGTGGGTGGGCTGAGCACAGTGTGGCAGGCAGCCGGGCCCCAGTGCCCACCTGCCCTTCTTCATCTGCCCTAGGCTGTGTGCTGTGA

CircID chr17:44351389|44351619
ORF Type ORF5
Protein Length 51
Nucleotide Length 156
Protein Sequence MPRWLYLLPSTVGGLGLLPFYPGTQGWRVGGLSTVWQAAGPQCPPALLHLP
Nucleotide Sequence CTGCCCAGATGGCTATACCTGCTGCCGTCTACAGTCGGGGGCCTGGGGCTGCTGCCCTTTTACCCAGGTACCCAGGGGTGGCGGGTGGGTGGGCTGAGCACAGTGTGGCAGGCAGCCGGGCCCCAGTGCCCACCTGCCCTTCTTCATCTGCCCTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites