CircRNA Information

General Information
circRNA Basic Information
CircID chr17:44351412|44351675
Strand -
CircType exon
Host Gene ENSG00000030582.15;
Algorism CIRI2;
Sequence CTGCTGCCGTCTACAGTCGGGGGCCTGGGGCTGCTGCCCTTTTACCCAGGTACCCAGGGGTGGCGGGTGGGTGGGCTGAGCACAGTGTGGCAGGCAGCCGGGCCCCAGTGCCCACCTGCCCTTCTTCATCTGCCCTAGGCTGTGTGCTGTGAGGACCACATACACTGCTGTCCCGCGGGGTTTACGTGTGACACGCAGAAGGGTACCTGTGAACAGGGGCCCCACCAGGTGCCCTGGATGGAGAAGGCCCCAGCTCACCTCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:44351412|44351675 hsa-miR-27a-5p 0 0 1
chr17:44351412|44351675 hsa-miR-27a-3p 0 0 1
chr17:44351412|44351675 hsa-miR-27b-5p 0 0 1
chr17:44351412|44351675 hsa-miR-27b-3p 0 0 1
chr17:44351412|44351675 hsa-miR-136-5p 0 0 1
chr17:44351412|44351675 hsa-miR-136-3p 0 0 1
chr17:44351412|44351675 hsa-miR-555 0 0 1
chr17:44351412|44351675 hsa-miR-558 0 0 1
chr17:44351412|44351675 hsa-miR-567 0 0 1
chr17:44351412|44351675 hsa-miR-597-5p 0 0 1
chr17:44351412|44351675 hsa-miR-597-3p 0 0 1
chr17:44351412|44351675 hsa-miR-619-5p 0 0 1
chr17:44351412|44351675 hsa-miR-619-3p 0 0 1
chr17:44351412|44351675 hsa-miR-541-5p 0 0 1
chr17:44351412|44351675 hsa-miR-541-3p 0 0 1
chr17:44351412|44351675 hsa-miR-297 0 0 1
chr17:44351412|44351675 hsa-miR-1183 0 0 1
chr17:44351412|44351675 hsa-miR-1237-5p 0 0 1
chr17:44351412|44351675 hsa-miR-1237-3p 0 0 1
chr17:44351412|44351675 hsa-miR-296-5p 1 0 1
chr17:44351412|44351675 hsa-miR-299-3p 0 0 1
chr17:44351412|44351675 hsa-miR-1225-5p 0 0 1
chr17:44351412|44351675 hsa-miR-654-5p 0 0 1
chr17:44351412|44351675 hsa-miR-483-5p 0 0 1
chr17:44351412|44351675 hsa-miR-331-3p 0 1 1
chr17:44351412|44351675 hsa-miR-513a-5p 0 0 1
chr17:44351412|44351675 hsa-miR-515-5p 0 0 1
chr17:44351412|44351675 hsa-miR-1274b 0 0 1
chr17:44351412|44351675 hsa-miR-220c 0 0 1
chr17:44351412|44351675 hsa-miR-636 1 0 0
chr17:44351412|44351675 hsa-miR-637 1 0 0
chr17:44351412|44351675 hsa-miR-661 1 0 0
chr17:44351412|44351675 hsa-miR-762 1 0 0
chr17:44351412|44351675 hsa-miR-663b 1 0 0
chr17:44351412|44351675 hsa-miR-1291 1 0 0
chr17:44351412|44351675 hsa-miR-1538 1 1 0
chr17:44351412|44351675 hsa-miR-2861 1 0 0
chr17:44351412|44351675 hsa-miR-3132 0 1 0
chr17:44351412|44351675 hsa-miR-3141 1 1 0
chr17:44351412|44351675 hsa-miR-3154 1 1 0
chr17:44351412|44351675 hsa-miR-3185 1 1 0
chr17:44351412|44351675 hsa-miR-4258 0 1 0
chr17:44351412|44351675 hsa-miR-3943 1 0 0
chr17:44351412|44351675 hsa-miR-4456 0 1 0
chr17:44351412|44351675 hsa-miR-4516 1 0 0
chr17:44351412|44351675 hsa-miR-4688 1 0 0
chr17:44351412|44351675 hsa-miR-4689 1 0 0
chr17:44351412|44351675 hsa-miR-4739 1 0 0
chr17:44351412|44351675 hsa-miR-4767 1 0 0
chr17:44351412|44351675 hsa-miR-5090 0 1 0
chr17:44351412|44351675 hsa-miR-5685 0 1 0
chr17:44351412|44351675 hsa-miR-8078 0 1 0
chr17:44351412|44351675 hsa-miR-8089 1 0 0
chr17:44351412|44351675 hsa-miR-203a-5p 1 1 0
chr17:44351412|44351675 hsa-miR-4747-3p 1 0 0
chr17:44351412|44351675 hsa-miR-214-5p 0 1 0
chr17:44351412|44351675 hsa-miR-92a-2-5p 0 1 0
chr17:44351412|44351675 hsa-miR-128-1-5p 1 0 0
chr17:44351412|44351675 hsa-miR-3194-3p 1 0 0
chr17:44351412|44351675 hsa-miR-4665-3p 1 0 0
chr17:44351412|44351675 hsa-miR-6861-5p 1 1 0
chr17:44351412|44351675 hsa-miR-210-5p 0 1 0
chr17:44351412|44351675 hsa-miR-1227-5p 0 1 0
chr17:44351412|44351675 hsa-miR-6867-5p 1 0 0
chr17:44351412|44351675 hsa-miR-4709-3p 1 0 0
chr17:44351412|44351675 hsa-miR-4722-5p 1 0 0
chr17:44351412|44351675 hsa-miR-7160-5p 0 1 0
chr17:44351412|44351675 hsa-miR-6721-5p 0 1 0
chr17:44351412|44351675 hsa-miR-197-5p 1 1 0
chr17:44351412|44351675 hsa-miR-656-5p 1 0 0
chr17:44351412|44351675 hsa-miR-6765-3p 0 1 0
chr17:44351412|44351675 hsa-miR-6882-3p 0 1 0
chr17:44351412|44351675 hsa-miR-615-5p 1 0 0
chr17:44351412|44351675 hsa-miR-1226-5p 1 0 0
chr17:44351412|44351675 hsa-miR-4763-5p 1 0 0
chr17:44351412|44351675 hsa-miR-7108-3p 0 1 0
chr17:44351412|44351675 hsa-miR-3944-3p 1 0 0
chr17:44351412|44351675 hsa-miR-1908-3p 1 0 0
chr17:44351412|44351675 hsa-miR-6894-3p 0 1 0
chr17:44351412|44351675 hsa-miR-1266-3p 0 1 0
chr17:44351412|44351675 hsa-miR-941 1 1 0
chr17:44351412|44351675 hsa-miR-6499-3p 0 1 0
chr17:44351412|44351675 hsa-miR-330-3p 1 1 0
chr17:44351412|44351675 hsa-miR-1296-5p 1 0 0
chr17:44351412|44351675 hsa-miR-1914-5p 0 1 0
chr17:44351412|44351675 hsa-miR-4763-3p 1 0 0
chr17:44351412|44351675 hsa-miR-6812-5p 1 1 0
chr17:44351412|44351675 hsa-miR-6726-5p 1 0 0
chr17:44351412|44351675 hsa-miR-6743-5p 1 0 0
chr17:44351412|44351675 hsa-miR-6756-5p 1 0 0
chr17:44351412|44351675 hsa-miR-6851-5p 1 1 0
chr17:44351412|44351675 hsa-miR-6808-5p 1 0 0
chr17:44351412|44351675 hsa-miR-6879-5p 0 1 0
chr17:44351412|44351675 hsa-miR-320a-5p 0 1 0
chr17:44351412|44351675 hsa-miR-3620-5p 1 0 0
chr17:44351412|44351675 hsa-miR-1909-3p 1 0 0
chr17:44351412|44351675 hsa-miR-4632-5p 1 1 0
chr17:44351412|44351675 hsa-miR-4685-5p 0 1 0
chr17:44351412|44351675 hsa-miR-4745-3p 1 1 0
chr17:44351412|44351675 hsa-miR-6735-5p 1 1 0
chr17:44351412|44351675 hsa-miR-6848-5p 1 0 0
chr17:44351412|44351675 hsa-miR-4436b-3p 0 1 0
chr17:44351412|44351675 hsa-miR-939-5p 1 0 0
chr17:44351412|44351675 hsa-miR-4758-5p 1 0 0
chr17:44351412|44351675 hsa-miR-10396a-3p 1 1 0
chr17:44351412|44351675 hsa-miR-10396b-3p 1 1 0
chr17:44351412|44351675 hsa-miR-7843-5p 0 1 0
chr17:44351412|44351675 hsa-miR-6736-5p 1 0 0
chr17:44351412|44351675 hsa-miR-6791-5p 1 1 0
chr17:44351412|44351675 hsa-miR-6762-5p 1 0 0
chr17:44351412|44351675 hsa-miR-6727-3p 0 1 0
chr17:44351412|44351675 hsa-miR-6893-3p 1 0 0
chr17:44351412|44351675 hsa-miR-6862-3p 0 1 0
chr17:44351412|44351675 hsa-miR-3085-3p 1 0 0
chr17:44351412|44351675 hsa-miR-3619-5p 1 0 0
chr17:44351412|44351675 hsa-miR-6737-3p 0 1 0
chr17:44351412|44351675 hsa-miR-3064-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:44351412|44351675
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence LLPSTVGGLGLLPFYPGTQGWRVGGLSTVWQAAGPQCPPALLHLP
Nucleotide Sequence CTGCTGCCGTCTACAGTCGGGGGCCTGGGGCTGCTGCCCTTTTACCCAGGTACCCAGGGGTGGCGGGTGGGTGGGCTGAGCACAGTGTGGCAGGCAGCCGGGCCCCAGTGCCCACCTGCCCTTCTTCATCTGCCCTAG
CircID chr17:44351412|44351675
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MPFFICPRLCAVRTTYTAVPRGLRVTRRRVPVNRGPTRCPGWRRPQLTS
Nucleotide Sequence CTGCCCTTCTTCATCTGCCCTAGGCTGTGTGCTGTGAGGACCACATACACTGCTGTCCCGCGGGGTTTACGTGTGACACGCAGAAGGGTACCTGTGAACAGGGGCCCCACCAGGTGCCCTGGATGGAGAAGGCCCCAGCTCACCTCA
CircID chr17:44351412|44351675
ORF Type ORF3
Protein Length 76
Nucleotide Length 228
Protein Sequence MVGPLFTGTLLRVTRKPRGTAVYVVLTAHSLGQMKKGRWALGPGCLPHCAQPTHPPPLGTWVKGQQPQAPDCRRQQ
Nucleotide Sequence CTGGTGGGGCCCCTGTTCACAGGTACCCTTCTGCGTGTCACACGTAAACCCCGCGGGACAGCAGTGTATGTGGTCCTCACAGCACACAGCCTAGGGCAGATGAAGAAGGGCAGGTGGGCACTGGGGCCCGGCTGCCTGCCACACTGTGCTCAGCCCACCCACCCGCCACCCCTGGGTACCTGGGTAAAAGGGCAGCAGCCCCAGGCCCCCGACTGTAGACGGCAGCAG
CircID chr17:44351412|44351675
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MPATLCSAHPPATPGYLGKRAAAPGPRL
Nucleotide Sequence CTGCCTGCCACACTGTGCTCAGCCCACCCACCCGCCACCCCTGGGTACCTGGGTAAAAGGGCAGCAGCCCCAGGCCCCCGACTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab