CircRNA Information

General Information
circRNA Basic Information
CircID chr17:44352523|44352816
Strand -
CircType exon
Host Gene ENSG00000030582.15;
Algorism CIRI2;
Sequence CTGCTGCCGAGACAACCGACAGGGCTGGGCCTGCTGTCCCTACCGCCAGGTCAGTGCCAACCCCCATCCTGGGGCTGGGTATGGCCAGGGACCAGGTCCCACCTCGTCCAACCCTCTCGCCCCCCTCTGACCATCCAGGGCGTCTGTTGTGCTGATCGGCGCCACTGCTGTCCTGCTGGCTTCCGCTGCGCAGCCAGGGGTACCAAGTGTTTGCGCAGGGAGGCCCCGCGCTGGGACGCCCCTTTGAGGGACCCAGCCTTGAGACAGCTGCTGTGAGGGACAGTACTGAAGACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:44352523|44352816 hsa-miR-96-5p 0 0 1
chr17:44352523|44352816 hsa-miR-96-3p 0 0 1
chr17:44352523|44352816 hsa-miR-214-5p 0 0 1
chr17:44352523|44352816 hsa-miR-214-3p 0 0 1
chr17:44352523|44352816 hsa-miR-492 0 0 1
chr17:44352523|44352816 hsa-miR-604 0 0 1
chr17:44352523|44352816 hsa-miR-626 0 0 1
chr17:44352523|44352816 hsa-miR-631 0 1 1
chr17:44352523|44352816 hsa-miR-646 0 1 1
chr17:44352523|44352816 hsa-miR-647 0 0 1
chr17:44352523|44352816 hsa-miR-1271-5p 0 0 1
chr17:44352523|44352816 hsa-miR-1271-3p 0 0 1
chr17:44352523|44352816 hsa-miR-744-5p 0 0 1
chr17:44352523|44352816 hsa-miR-744-3p 0 0 1
chr17:44352523|44352816 hsa-miR-1286 0 0 1
chr17:44352523|44352816 hsa-miR-1263 0 1 1
chr17:44352523|44352816 hsa-miR-1278 0 1 1
chr17:44352523|44352816 hsa-miR-1307-5p 0 0 1
chr17:44352523|44352816 hsa-miR-1307-3p 0 0 1
chr17:44352523|44352816 hsa-miR-513c-5p 0 0 1
chr17:44352523|44352816 hsa-miR-513c-3p 0 0 1
chr17:44352523|44352816 hsa-miR-671-5p 1 1 1
chr17:44352523|44352816 hsa-miR-296-3p 0 1 1
chr17:44352523|44352816 hsa-miR-146b-3p 0 0 1
chr17:44352523|44352816 hsa-miR-339-5p 0 0 1
chr17:44352523|44352816 hsa-miR-566 0 0 1
chr17:44352523|44352816 hsa-miR-331-3p 0 1 1
chr17:44352523|44352816 hsa-miR-453 0 0 1
chr17:44352523|44352816 hsa-miR-575 0 1 0
chr17:44352523|44352816 hsa-miR-608 1 0 0
chr17:44352523|44352816 hsa-miR-638 1 0 0
chr17:44352523|44352816 hsa-miR-661 1 0 0
chr17:44352523|44352816 hsa-miR-663a 1 0 0
chr17:44352523|44352816 hsa-miR-658 1 1 0
chr17:44352523|44352816 hsa-miR-762 1 0 0
chr17:44352523|44352816 hsa-miR-761 0 1 0
chr17:44352523|44352816 hsa-miR-1248 0 1 0
chr17:44352523|44352816 hsa-miR-3138 1 0 0
chr17:44352523|44352816 hsa-miR-3141 1 0 0
chr17:44352523|44352816 hsa-miR-1193 0 1 0
chr17:44352523|44352816 hsa-miR-3196 1 0 0
chr17:44352523|44352816 hsa-miR-4298 1 0 0
chr17:44352523|44352816 hsa-miR-3649 0 1 0
chr17:44352523|44352816 hsa-miR-3661 0 1 0
chr17:44352523|44352816 hsa-miR-4436a 0 1 0
chr17:44352523|44352816 hsa-miR-4479 1 0 0
chr17:44352523|44352816 hsa-miR-4488 1 0 0
chr17:44352523|44352816 hsa-miR-2392 0 1 0
chr17:44352523|44352816 hsa-miR-4507 1 1 0
chr17:44352523|44352816 hsa-miR-4519 0 1 0
chr17:44352523|44352816 hsa-miR-4530 0 1 0
chr17:44352523|44352816 hsa-miR-4651 1 0 0
chr17:44352523|44352816 hsa-miR-4688 1 0 0
chr17:44352523|44352816 hsa-miR-5194 1 0 0
chr17:44352523|44352816 hsa-miR-5693 0 1 0
chr17:44352523|44352816 hsa-miR-5787 1 1 0
chr17:44352523|44352816 hsa-miR-6090 1 0 0
chr17:44352523|44352816 hsa-miR-6131 1 0 0
chr17:44352523|44352816 hsa-miR-8072 1 0 0
chr17:44352523|44352816 hsa-miR-8085 1 0 0
chr17:44352523|44352816 hsa-miR-150-3p 1 0 0
chr17:44352523|44352816 hsa-miR-6720-5p 0 1 0
chr17:44352523|44352816 hsa-miR-1233-3p 1 0 0
chr17:44352523|44352816 hsa-miR-6799-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6728-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6089 1 0 0
chr17:44352523|44352816 hsa-miR-4722-5p 1 0 0
chr17:44352523|44352816 hsa-miR-3064-5p 0 1 0
chr17:44352523|44352816 hsa-miR-197-5p 1 0 0
chr17:44352523|44352816 hsa-miR-8069 1 1 0
chr17:44352523|44352816 hsa-miR-874-3p 1 0 0
chr17:44352523|44352816 hsa-let-7i-3p 0 1 0
chr17:44352523|44352816 hsa-miR-6776-5p 1 0 0
chr17:44352523|44352816 hsa-miR-7845-5p 0 1 0
chr17:44352523|44352816 hsa-miR-6742-5p 1 0 0
chr17:44352523|44352816 hsa-miR-3180-3p 1 0 0
chr17:44352523|44352816 hsa-miR-6732-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6805-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6798-5p 1 1 0
chr17:44352523|44352816 hsa-miR-6782-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6786-5p 1 0 0
chr17:44352523|44352816 hsa-miR-2277-3p 1 0 0
chr17:44352523|44352816 hsa-miR-4786-3p 0 1 0
chr17:44352523|44352816 hsa-miR-6771-5p 1 0 0
chr17:44352523|44352816 hsa-miR-3614-5p 0 1 0
chr17:44352523|44352816 hsa-miR-4783-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6749-5p 1 0 0
chr17:44352523|44352816 hsa-miR-4787-5p 1 0 0
chr17:44352523|44352816 hsa-miR-149-3p 1 0 0
chr17:44352523|44352816 hsa-miR-6789-5p 1 1 0
chr17:44352523|44352816 hsa-miR-6781-5p 1 0 0
chr17:44352523|44352816 hsa-miR-3190-5p 0 1 0
chr17:44352523|44352816 hsa-miR-423-5p 1 0 0
chr17:44352523|44352816 hsa-miR-7152-3p 0 1 0
chr17:44352523|44352816 hsa-miR-6778-3p 0 1 0
chr17:44352523|44352816 hsa-miR-6801-5p 1 1 0
chr17:44352523|44352816 hsa-miR-6779-3p 0 1 0
chr17:44352523|44352816 hsa-miR-3617-3p 0 1 0
chr17:44352523|44352816 hsa-miR-5003-5p 0 1 0
chr17:44352523|44352816 hsa-miR-4763-3p 1 0 0
chr17:44352523|44352816 hsa-miR-6769b-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6778-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6787-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6812-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6816-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6870-5p 1 0 0
chr17:44352523|44352816 hsa-miR-1343-5p 1 0 0
chr17:44352523|44352816 hsa-miR-5001-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6743-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6752-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6756-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6803-5p 1 1 0
chr17:44352523|44352816 hsa-miR-6815-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6842-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6851-5p 1 0 0
chr17:44352523|44352816 hsa-miR-7110-5p 1 0 0
chr17:44352523|44352816 hsa-miR-1249-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6751-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6779-5p 1 0 0
chr17:44352523|44352816 hsa-miR-7111-5p 1 0 0
chr17:44352523|44352816 hsa-miR-3620-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6836-5p 1 0 0
chr17:44352523|44352816 hsa-miR-10526-3p 1 0 0
chr17:44352523|44352816 hsa-miR-1237-5p 1 0 0
chr17:44352523|44352816 hsa-miR-328-5p 1 1 0
chr17:44352523|44352816 hsa-miR-4632-5p 1 0 0
chr17:44352523|44352816 hsa-miR-4649-5p 1 1 0
chr17:44352523|44352816 hsa-miR-4685-5p 1 0 0
chr17:44352523|44352816 hsa-miR-4726-5p 1 0 0
chr17:44352523|44352816 hsa-miR-4745-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6729-5p 1 1 0
chr17:44352523|44352816 hsa-miR-6794-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6795-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6846-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6848-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6887-5p 1 0 0
chr17:44352523|44352816 hsa-miR-4697-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6885-5p 1 0 0
chr17:44352523|44352816 hsa-miR-4758-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6785-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6718-5p 1 0 0
chr17:44352523|44352816 hsa-miR-6775-3p 1 0 0
chr17:44352523|44352816 hsa-miR-10392-3p 1 0 0
chr17:44352523|44352816 hsa-miR-3619-5p 0 1 0
chr17:44352523|44352816 hsa-miR-6504-5p 0 1 0
chr17:44352523|44352816 hsa-miR-6838-5p 1 0 0
chr17:44352523|44352816 hsa-miR-193a-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:44352523|44352816
ORF Type ORF1
Protein Length 91
Nucleotide Length 276
Protein Sequence LLPRQPTGLGLLSLPPGQCQPPSWGWVWPGTRSHLVQPSRPPLTIQGVCCADRRHCCPAGFRCAARGTKCLRREAPRWDAPLRDPALRQLL
Nucleotide Sequence CTGCTGCCGAGACAACCGACAGGGCTGGGCCTGCTGTCCCTACCGCCAGGTCAGTGCCAACCCCCATCCTGGGGCTGGGTATGGCCAGGGACCAGGTCCCACCTCGTCCAACCCTCTCGCCCCCCTCTGACCATCCAGGGCGTCTGTTGTGCTGATCGGCGCCACTGCTGTCCTGCTGGCTTCCGCTGCGCAGCCAGGGGTACCAAGTGTTTGCGCAGGGAGGCCCCGCGCTGGGACGCCCCTTTGAGGGACCCAGCCTTGAGACAGCTGCTGTGA
CircID chr17:44352523|44352816
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MIGATAVLLASAAQPGVPSVCAGRPRAGTPL
Nucleotide Sequence CTGATCGGCGCCACTGCTGTCCTGCTGGCTTCCGCTGCGCAGCCAGGGGTACCAAGTGTTTGCGCAGGGAGGCCCCGCGCTGGGACGCCCCTTTGA
CircID chr17:44352523|44352816
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MGLGMARDQVPPRPTLSPPSDHPGRLLC
Nucleotide Sequence CTGGGGCTGGGTATGGCCAGGGACCAGGTCCCACCTCGTCCAACCCTCTCGCCCCCCTCTGACCATCCAGGGCGTCTGTTGTGCTGA
CircID chr17:44352523|44352816
ORF Type ORF4
Protein Length 43
Nucleotide Length 129
Protein Sequence MLSCWLPLRSQGYQVFAQGGPALGRPFEGPSLETAAVRDSTED
Nucleotide Sequence CTGCTGTCCTGCTGGCTTCCGCTGCGCAGCCAGGGGTACCAAGTGTTTGCGCAGGGAGGCCCCGCGCTGGGACGCCCCTTTGAGGGACCCAGCCTTGAGACAGCTGCTGTGAGGGACAGTACTGAAGAC
CircID chr17:44352523|44352816
ORF Type ORF5
Protein Length 75
Nucleotide Length 228
Protein Sequence MSQGWVPQRGVPARGLPAQTLGTPGCAAEASRTAVAPISTTDALDGQRGARGLDEVGPGPWPYPAPGWGLALTWR
Nucleotide Sequence CTGTCTCAAGGCTGGGTCCCTCAAAGGGGCGTCCCAGCGCGGGGCCTCCCTGCGCAAACACTTGGTACCCCTGGCTGCGCAGCGGAAGCCAGCAGGACAGCAGTGGCGCCGATCAGCACAACAGACGCCCTGGATGGTCAGAGGGGGGCGAGAGGGTTGGACGAGGTGGGACCTGGTCCCTGGCCATACCCAGCCCCAGGATGGGGGTTGGCACTGACCTGGCGGTAG
CircID chr17:44352523|44352816
ORF Type ORF6
Protein Length 55
Nucleotide Length 168
Protein Sequence MRKHLVPLAAQRKPAGQQWRRSAQQTPWMVRGGREGWTRWDLVPGHTQPQDGGWH
Nucleotide Sequence CTGCGCAAACACTTGGTACCCCTGGCTGCGCAGCGGAAGCCAGCAGGACAGCAGTGGCGCCGATCAGCACAACAGACGCCCTGGATGGTCAGAGGGGGGCGAGAGGGTTGGACGAGGTGGGACCTGGTCCCTGGCCATACCCAGCCCCAGGATGGGGGTTGGCACTGA
CircID chr17:44352523|44352816
ORF Type ORF7
Protein Length 94
Nucleotide Length 282
Protein Sequence MSLTAAVSRLGPSKGRPSAGPPCANTWYPWLRSGSQQDSSGADQHNRRPGWSEGGERVGRGGTWSLAIPSPRMGVGTDLAVGTAGPALSVVSAA
Nucleotide Sequence CTGTCCCTCACAGCAGCTGTCTCAAGGCTGGGTCCCTCAAAGGGGCGTCCCAGCGCGGGGCCTCCCTGCGCAAACACTTGGTACCCCTGGCTGCGCAGCGGAAGCCAGCAGGACAGCAGTGGCGCCGATCAGCACAACAGACGCCCTGGATGGTCAGAGGGGGGCGAGAGGGTTGGACGAGGTGGGACCTGGTCCCTGGCCATACCCAGCCCCAGGATGGGGGTTGGCACTGACCTGGCGGTAGGGACAGCAGGCCCAGCCCTGTCGGTTGTCTCGGCAGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab