CircRNA Information

General Information
circRNA Basic Information
CircID chr17:4671691|4671789
Strand -
CircType exon
Host Gene ENSG00000141456.13;
Algorism CIRI2;
Sequence CTTTTCCTGGAGAGCTTCGGCCTCTGTCTCTGTCTCCATCTCTTCTTCTGCAGGTGTCTCTGGTGGGGGCTGCACCTTGTCACTCCCATCCTCAGTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:4671691|4671789 hsa-miR-18a-5p 0 0 1
chr17:4671691|4671789 hsa-miR-18a-3p 0 0 1
chr17:4671691|4671789 hsa-miR-18b-5p 0 0 1
chr17:4671691|4671789 hsa-miR-18b-3p 0 0 1
chr17:4671691|4671789 hsa-miR-624-5p 0 0 1
chr17:4671691|4671789 hsa-miR-624-3p 0 0 1
chr17:4671691|4671789 hsa-miR-766-5p 0 0 1
chr17:4671691|4671789 hsa-miR-766-3p 0 0 1
chr17:4671691|4671789 hsa-miR-298 1 1 1
chr17:4671691|4671789 hsa-miR-665 0 0 1
chr17:4671691|4671789 hsa-miR-1185 0 0 1
chr17:4671691|4671789 hsa-miR-492 1 0 0
chr17:4671691|4671789 hsa-miR-620 0 1 0
chr17:4671691|4671789 hsa-miR-650 1 0 0
chr17:4671691|4671789 hsa-miR-765 1 0 0
chr17:4671691|4671789 hsa-miR-1303 1 0 0
chr17:4671691|4671789 hsa-miR-1270 1 1 0
chr17:4671691|4671789 hsa-miR-3125 1 1 0
chr17:4671691|4671789 hsa-miR-3154 1 0 0
chr17:4671691|4671789 hsa-miR-3185 1 0 0
chr17:4671691|4671789 hsa-miR-3193 1 0 0
chr17:4671691|4671789 hsa-miR-4298 1 0 0
chr17:4671691|4671789 hsa-miR-4257 1 0 0
chr17:4671691|4671789 hsa-miR-4271 1 0 0
chr17:4671691|4671789 hsa-miR-3916 1 1 0
chr17:4671691|4671789 hsa-miR-3943 0 1 0
chr17:4671691|4671789 hsa-miR-4428 1 0 0
chr17:4671691|4671789 hsa-miR-4463 1 0 0
chr17:4671691|4671789 hsa-miR-2392 1 1 0
chr17:4671691|4671789 hsa-miR-4513 1 0 0
chr17:4671691|4671789 hsa-miR-4516 1 0 0
chr17:4671691|4671789 hsa-miR-4534 0 1 0
chr17:4671691|4671789 hsa-miR-4644 1 1 0
chr17:4671691|4671789 hsa-miR-4689 1 0 0
chr17:4671691|4671789 hsa-miR-4784 1 0 0
chr17:4671691|4671789 hsa-miR-6086 1 0 0
chr17:4671691|4671789 hsa-miR-6088 1 0 0
chr17:4671691|4671789 hsa-miR-6165 1 0 0
chr17:4671691|4671789 hsa-miR-8089 1 0 0
chr17:4671691|4671789 hsa-miR-1273h-3p 1 0 0
chr17:4671691|4671789 hsa-miR-6894-5p 1 0 0
chr17:4671691|4671789 hsa-miR-6728-5p 1 0 0
chr17:4671691|4671789 hsa-miR-1236-5p 0 1 0
chr17:4671691|4671789 hsa-miR-6089 1 1 0
chr17:4671691|4671789 hsa-miR-6757-5p 1 0 0
chr17:4671691|4671789 hsa-miR-6880-5p 1 0 0
chr17:4671691|4671789 hsa-miR-4695-5p 1 0 0
chr17:4671691|4671789 hsa-miR-4709-3p 1 0 0
chr17:4671691|4671789 hsa-miR-4722-5p 1 0 0
chr17:4671691|4671789 hsa-miR-593-5p 1 0 0
chr17:4671691|4671789 hsa-miR-7845-5p 1 0 0
chr17:4671691|4671789 hsa-miR-3605-5p 1 1 0
chr17:4671691|4671789 hsa-miR-6871-5p 0 1 0
chr17:4671691|4671789 hsa-miR-6796-3p 0 1 0
chr17:4671691|4671789 hsa-miR-3126-5p 1 0 0
chr17:4671691|4671789 hsa-miR-2467-3p 1 1 0
chr17:4671691|4671789 hsa-miR-3150b-3p 1 0 0
chr17:4671691|4671789 hsa-miR-6810-5p 1 1 0
chr17:4671691|4671789 hsa-miR-6850-5p 1 0 0
chr17:4671691|4671789 hsa-miR-6753-5p 1 0 0
chr17:4671691|4671789 hsa-miR-296-3p 1 0 0
chr17:4671691|4671789 hsa-miR-92b-5p 1 0 0
chr17:4671691|4671789 hsa-miR-877-5p 1 0 0
chr17:4671691|4671789 hsa-miR-6847-5p 1 0 0
chr17:4671691|4671789 hsa-miR-4787-5p 1 0 0
chr17:4671691|4671789 hsa-miR-149-3p 1 0 0
chr17:4671691|4671789 hsa-miR-7156-3p 0 1 0
chr17:4671691|4671789 hsa-miR-3158-5p 1 1 0
chr17:4671691|4671789 hsa-miR-873-3p 0 1 0
chr17:4671691|4671789 hsa-miR-4524a-3p 0 1 0
chr17:4671691|4671789 hsa-miR-5197-3p 0 1 0
chr17:4671691|4671789 hsa-miR-6857-3p 1 0 0
chr17:4671691|4671789 hsa-miR-6778-5p 1 1 0
chr17:4671691|4671789 hsa-miR-5001-5p 1 0 0
chr17:4671691|4671789 hsa-miR-6756-5p 1 0 0
chr17:4671691|4671789 hsa-miR-1249-5p 1 0 0
chr17:4671691|4671789 hsa-miR-6875-5p 1 0 0
chr17:4671691|4671789 hsa-miR-4745-5p 1 0 0
chr17:4671691|4671789 hsa-miR-6858-5p 1 0 0
chr17:4671691|4671789 hsa-miR-6831-5p 1 0 0
chr17:4671691|4671789 hsa-miR-6845-5p 1 0 0
chr17:4671691|4671789 hsa-miR-6511a-5p 1 0 0
chr17:4671691|4671789 hsa-miR-6511b-5p 1 0 0
chr17:4671691|4671789 hsa-miR-4700-5p 1 1 0
chr17:4671691|4671789 hsa-miR-3679-5p 1 0 0
chr17:4671691|4671789 hsa-miR-6790-5p 1 0 0
chr17:4671691|4671789 hsa-miR-6859-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:4671691|4671789
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MESFGLCLCLHLFFCRCLWWGLHLVTPILSL
Nucleotide Sequence CTGGAGAGCTTCGGCCTCTGTCTCTGTCTCCATCTCTTCTTCTGCAGGTGTCTCTGGTGGGGGCTGCACCTTGTCACTCCCATCCTCAGTCTC
CircID chr17:4671691|4671789
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MSLSPSLLLQVSLVGAAPCHSHPQS
Nucleotide Sequence CTGTCTCTGTCTCCATCTCTTCTTCTGCAGGTGTCTCTGGTGGGGGCTGCACCTTGTCACTCCCATCCTCAGTCT
CircID chr17:4671691|4671789
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MRMGVTRCSPHQRHLQKKRWRQRQRPKLSRK
Nucleotide Sequence CTGAGGATGGGAGTGACAAGGTGCAGCCCCCACCAGAGACACCTGCAGAAGAAGAGATGGAGACAGAGACAGAGGCCGAAGCTCTCCAGGAAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab