CircRNA Information

General Information
circRNA Basic Information
CircID chr17:4718270|4718662
Strand -
CircType exon
Host Gene ENSG00000141480.16;
Algorism CIRI2;
Sequence CATGGGGAGCCCCTCAATGTAAATGTCCACGTCACCAACAACTCCACCAAGACCGTCAAGAAGATCAAAGTCTCTGGTAGGAGGTGGGGTTTGGAAGGGGGTCTTCGGGGAGGGCGTTACTGCACAGGTGGCTCCTGGTGTGATCTCAGCCCAGGCCATTTCCCAGTGCGGGAGACCCACCAGGGCTCAAAGAATTTAGGTTGTTCCATAATGATACGGGGAGCCTCGGTGTTTACTGCTTCAGTGGGGAGCATGGGGGGGCCACGCCACGGGGTCTGGAGTTGTGGTGTGGTGGTGGCTTGTGCTCCATCCAGAGCTGCCTGACCCCGTCCCACCCCACAGTGAGACAGTACGCCGACATCTGCCTCTTCAGCACCGCCCAGTACAAGTGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:4718270|4718662 hsa-miR-30a-5p 0 0 1
chr17:4718270|4718662 hsa-miR-30a-3p 0 0 1
chr17:4718270|4718662 hsa-miR-30d-5p 0 0 1
chr17:4718270|4718662 hsa-miR-30d-3p 0 0 1
chr17:4718270|4718662 hsa-miR-30b-5p 0 0 1
chr17:4718270|4718662 hsa-miR-30b-3p 0 0 1
chr17:4718270|4718662 hsa-miR-30e-5p 0 0 1
chr17:4718270|4718662 hsa-miR-30e-3p 0 0 1
chr17:4718270|4718662 hsa-miR-526b-5p 0 0 1
chr17:4718270|4718662 hsa-miR-526b-3p 0 0 1
chr17:4718270|4718662 hsa-miR-608 1 1 1
chr17:4718270|4718662 hsa-miR-614 0 0 1
chr17:4718270|4718662 hsa-miR-661 0 0 1
chr17:4718270|4718662 hsa-miR-541-5p 0 0 1
chr17:4718270|4718662 hsa-miR-541-3p 0 0 1
chr17:4718270|4718662 hsa-miR-665 0 0 1
chr17:4718270|4718662 hsa-miR-1228-5p 0 0 1
chr17:4718270|4718662 hsa-miR-1228-3p 0 0 1
chr17:4718270|4718662 hsa-miR-663b 0 1 1
chr17:4718270|4718662 hsa-miR-1204 0 1 1
chr17:4718270|4718662 hsa-miR-1208 0 0 1
chr17:4718270|4718662 hsa-miR-1250-5p 0 0 1
chr17:4718270|4718662 hsa-miR-1250-3p 0 0 1
chr17:4718270|4718662 hsa-miR-1827 0 0 1
chr17:4718270|4718662 hsa-miR-1225-3p 0 0 1
chr17:4718270|4718662 hsa-miR-491-5p 0 0 1
chr17:4718270|4718662 hsa-miR-193a-5p 0 0 1
chr17:4718270|4718662 hsa-miR-423-5p 0 0 1
chr17:4718270|4718662 hsa-miR-654-5p 0 0 1
chr17:4718270|4718662 hsa-miR-508-5p 0 1 1
chr17:4718270|4718662 hsa-miR-1224-3p 0 1 1
chr17:4718270|4718662 hsa-miR-342-5p 0 0 1
chr17:4718270|4718662 hsa-miR-220b 0 0 1
chr17:4718270|4718662 hsa-miR-1233 0 0 1
chr17:4718270|4718662 hsa-miR-30c 0 0 1
chr17:4718270|4718662 hsa-miR-220a 0 0 1
chr17:4718270|4718662 hsa-miR-1826 0 0 1
chr17:4718270|4718662 hsa-miR-762 1 0 0
chr17:4718270|4718662 hsa-miR-1293 1 0 0
chr17:4718270|4718662 hsa-miR-1469 1 0 0
chr17:4718270|4718662 hsa-miR-3138 0 1 0
chr17:4718270|4718662 hsa-miR-4290 0 1 0
chr17:4718270|4718662 hsa-miR-3907 1 0 0
chr17:4718270|4718662 hsa-miR-378g 0 1 0
chr17:4718270|4718662 hsa-miR-3135b 1 0 0
chr17:4718270|4718662 hsa-miR-3689c 1 0 0
chr17:4718270|4718662 hsa-miR-4486 1 1 0
chr17:4718270|4718662 hsa-miR-4492 1 0 0
chr17:4718270|4718662 hsa-miR-4506 1 0 0
chr17:4718270|4718662 hsa-miR-4514 0 1 0
chr17:4718270|4718662 hsa-miR-1587 1 0 0
chr17:4718270|4718662 hsa-miR-4651 1 1 0
chr17:4718270|4718662 hsa-miR-4656 1 1 0
chr17:4718270|4718662 hsa-miR-4660 0 1 0
chr17:4718270|4718662 hsa-miR-4675 1 0 0
chr17:4718270|4718662 hsa-miR-4689 1 0 0
chr17:4718270|4718662 hsa-miR-4692 0 1 0
chr17:4718270|4718662 hsa-miR-4741 1 0 0
chr17:4718270|4718662 hsa-miR-5090 1 0 0
chr17:4718270|4718662 hsa-miR-5093 0 1 0
chr17:4718270|4718662 hsa-miR-6860 1 0 0
chr17:4718270|4718662 hsa-miR-8075 0 1 0
chr17:4718270|4718662 hsa-miR-187-3p 1 0 0
chr17:4718270|4718662 hsa-miR-143-5p 0 1 0
chr17:4718270|4718662 hsa-miR-6765-5p 1 0 0
chr17:4718270|4718662 hsa-miR-6836-3p 1 0 0
chr17:4718270|4718662 hsa-miR-1233-3p 1 1 0
chr17:4718270|4718662 hsa-miR-6799-5p 1 0 0
chr17:4718270|4718662 hsa-miR-4695-5p 1 0 0
chr17:4718270|4718662 hsa-miR-4709-3p 1 1 0
chr17:4718270|4718662 hsa-miR-296-5p 1 0 0
chr17:4718270|4718662 hsa-miR-6742-5p 1 1 0
chr17:4718270|4718662 hsa-miR-6796-5p 0 1 0
chr17:4718270|4718662 hsa-miR-2467-5p 0 1 0
chr17:4718270|4718662 hsa-miR-2467-3p 1 0 0
chr17:4718270|4718662 hsa-miR-4793-3p 1 1 0
chr17:4718270|4718662 hsa-miR-6821-5p 1 0 0
chr17:4718270|4718662 hsa-miR-4707-3p 1 0 0
chr17:4718270|4718662 hsa-miR-7161-3p 1 0 0
chr17:4718270|4718662 hsa-miR-4671-5p 0 1 0
chr17:4718270|4718662 hsa-miR-92b-5p 0 1 0
chr17:4718270|4718662 hsa-miR-6878-3p 0 1 0
chr17:4718270|4718662 hsa-miR-4640-3p 0 1 0
chr17:4718270|4718662 hsa-miR-6500-3p 0 1 0
chr17:4718270|4718662 hsa-miR-6769a-3p 1 0 0
chr17:4718270|4718662 hsa-let-7i-5p 1 0 0
chr17:4718270|4718662 hsa-miR-4758-3p 0 1 0
chr17:4718270|4718662 hsa-miR-4746-3p 1 0 0
chr17:4718270|4718662 hsa-miR-4750-5p 1 0 0
chr17:4718270|4718662 hsa-miR-6886-3p 1 0 0
chr17:4718270|4718662 hsa-miR-382-5p 0 1 0
chr17:4718270|4718662 hsa-miR-4749-3p 1 1 0
chr17:4718270|4718662 hsa-miR-328-3p 1 1 0
chr17:4718270|4718662 hsa-miR-518c-5p 0 1 0
chr17:4718270|4718662 hsa-miR-4717-5p 0 1 0
chr17:4718270|4718662 hsa-miR-1249-3p 1 0 0
chr17:4718270|4718662 hsa-miR-5009-3p 0 1 0
chr17:4718270|4718662 hsa-miR-4714-3p 0 1 0
chr17:4718270|4718662 hsa-miR-3689b-3p 1 0 0
chr17:4718270|4718662 hsa-miR-4763-3p 1 0 0
chr17:4718270|4718662 hsa-miR-6812-5p 1 1 0
chr17:4718270|4718662 hsa-miR-6816-5p 0 1 0
chr17:4718270|4718662 hsa-miR-6893-5p 1 0 0
chr17:4718270|4718662 hsa-miR-6743-5p 1 0 0
chr17:4718270|4718662 hsa-miR-6756-5p 1 1 0
chr17:4718270|4718662 hsa-miR-6819-5p 0 1 0
chr17:4718270|4718662 hsa-miR-11181-3p 1 0 0
chr17:4718270|4718662 hsa-miR-6722-3p 1 0 0
chr17:4718270|4718662 hsa-miR-6808-5p 1 0 0
chr17:4718270|4718662 hsa-miR-3127-3p 0 1 0
chr17:4718270|4718662 hsa-miR-3620-5p 1 1 0
chr17:4718270|4718662 hsa-miR-5189-5p 1 0 0
chr17:4718270|4718662 hsa-miR-10396b-5p 1 0 0
chr17:4718270|4718662 hsa-miR-675-5p 1 0 0
chr17:4718270|4718662 hsa-miR-6858-5p 1 0 0
chr17:4718270|4718662 hsa-miR-3187-5p 1 0 0
chr17:4718270|4718662 hsa-miR-6511a-5p 1 1 0
chr17:4718270|4718662 hsa-miR-6855-5p 0 1 0
chr17:4718270|4718662 hsa-miR-4646-5p 0 1 0
chr17:4718270|4718662 hsa-miR-6756-3p 0 1 0
chr17:4718270|4718662 hsa-miR-6862-3p 1 0 0
chr17:4718270|4718662 hsa-miR-6810-3p 1 0 0
chr17:4718270|4718662 hsa-miR-619-5p 0 1 0
chr17:4718270|4718662 hsa-miR-6771-3p 0 1 0
chr17:4718270|4718662 hsa-miR-30c-5p 0 1 0
chr17:4718270|4718662 hsa-miR-181b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:4718270|4718662
ORF Type ORF1
Protein Length 77
Nucleotide Length 234
Protein Sequence MEGGLRGGRYCTGGSWCDLSPGHFPVRETHQGSKNLGCSIMIRGASVFTASVGSMGGPRHGVWSCGVVVACAPSRAA
Nucleotide Sequence TTGGAAGGGGGTCTTCGGGGAGGGCGTTACTGCACAGGTGGCTCCTGGTGTGATCTCAGCCCAGGCCATTTCCCAGTGCGGGAGACCCACCAGGGCTCAAAGAATTTAGGTTGTTCCATAATGATACGGGGAGCCTCGGTGTTTACTGCTTCAGTGGGGAGCATGGGGGGGCCACGCCACGGGGTCTGGAGTTGTGGTGTGGTGGTGGCTTGTGCTCCATCCAGAGCTGCCTGA
CircID chr17:4718270|4718662
ORF Type ORF2
Protein Length 58
Nucleotide Length 177
Protein Sequence MSTSPTTPPRPSRRSKSLVGGGVWKGVFGEGVTAQVAPGVISAQAISQCGRPTRAQRI
Nucleotide Sequence ATGTCCACGTCACCAACAACTCCACCAAGACCGTCAAGAAGATCAAAGTCTCTGGTAGGAGGTGGGGTTTGGAAGGGGGTCTTCGGGGAGGGCGTTACTGCACAGGTGGCTCCTGGTGTGATCTCAGCCCAGGCCATTTCCCAGTGCGGGAGACCCACCAGGGCTCAAAGAATTTAG
CircID chr17:4718270|4718662
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MLQWGAWGGHATGSGVVVWWWLVLHPELPDPVPPHSETVRRHLPLQHRPVQV
Nucleotide Sequence CTGCTTCAGTGGGGAGCATGGGGGGGCCACGCCACGGGGTCTGGAGTTGTGGTGTGGTGGTGGCTTGTGCTCCATCCAGAGCTGCCTGACCCCGTCCCACCCCACAGTGAGACAGTACGCCGACATCTGCCTCTTCAGCACCGCCCAGTACAAGTG
CircID chr17:4718270|4718662
ORF Type ORF4
Protein Length 64
Nucleotide Length 192
Protein Sequence MFHNDTGSLGVYCFSGEHGGATPRGLELWCGGGLCSIQSCLTPSHPTVRQYADICLFSTAQYKC
Nucleotide Sequence TTGTTCCATAATGATACGGGGAGCCTCGGTGTTTACTGCTTCAGTGGGGAGCATGGGGGGGCCACGCCACGGGGTCTGGAGTTGTGGTGTGGTGGTGGCTTGTGCTCCATCCAGAGCTGCCTGACCCCGTCCCACCCCACAGTGAGACAGTACGCCGACATCTGCCTCTTCAGCACCGCCCAGTACAAGTGT
CircID chr17:4718270|4718662
ORF Type ORF5
Protein Length 33
Nucleotide Length 102
Protein Sequence MWGGTGSGSSGWSTSHHHTTTPDPVAWPPHAPH
Nucleotide Sequence CTGTGGGGTGGGACGGGGTCAGGCAGCTCTGGATGGAGCACAAGCCACCACCACACCACAACTCCAGACCCCGTGGCGTGGCCCCCCCATGCTCCCCACTGA
CircID chr17:4718270|4718662
ORF Type ORF6
Protein Length 61
Nucleotide Length 183
Protein Sequence MVGLPHWEMAWAEITPGATCAVTPSPKTPFQTPPPTRDFDLLDGLGGVVGDVDIYIEGLPM
Nucleotide Sequence CTGGTGGGTCTCCCGCACTGGGAAATGGCCTGGGCTGAGATCACACCAGGAGCCACCTGTGCAGTAACGCCCTCCCCGAAGACCCCCTTCCAAACCCCACCTCCTACCAGAGACTTTGATCTTCTTGACGGTCTTGGTGGAGTTGTTGGTGACGTGGACATTTACATTGAGGGGCTCCCCATG
CircID chr17:4718270|4718662
ORF Type ORF7
Protein Length 88
Nucleotide Length 267
Protein Sequence MGGAEEADVGVLSHCGVGRGQAALDGAQATTTPQLQTPWRGPPMLPTEAVNTEAPRIIMEQPKFFEPWWVSRTGKWPGLRSHQEPPVQ
Nucleotide Sequence CTGGGCGGTGCTGAAGAGGCAGATGTCGGCGTACTGTCTCACTGTGGGGTGGGACGGGGTCAGGCAGCTCTGGATGGAGCACAAGCCACCACCACACCACAACTCCAGACCCCGTGGCGTGGCCCCCCCATGCTCCCCACTGAAGCAGTAAACACCGAGGCTCCCCGTATCATTATGGAACAACCTAAATTCTTTGAGCCCTGGTGGGTCTCCCGCACTGGGAAATGGCCTGGGCTGAGATCACACCAGGAGCCACCTGTGCAGTAA
CircID chr17:4718270|4718662
ORF Type ORF8
Protein Length 51
Nucleotide Length 156
Protein Sequence MYWAVLKRQMSAYCLTVGWDGVRQLWMEHKPPPHHNSRPRGVAPPCSPLKQ
Nucleotide Sequence TTGTACTGGGCGGTGCTGAAGAGGCAGATGTCGGCGTACTGTCTCACTGTGGGGTGGGACGGGGTCAGGCAGCTCTGGATGGAGCACAAGCCACCACCACACCACAACTCCAGACCCCGTGGCGTGGCCCCCCCATGCTCCCCACTGAAGCAGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab