CircRNA Information

General Information
circRNA Basic Information
CircID chr17:47838336|47838583
Strand -
CircType exon
Host Gene ENSG00000141295.12;
Algorism CIRI2;
Sequence CTGAGTCTGGAATCGGGGCAGGGTCCGAACAGGGTCTTGTGCTCCAAAAGTGGGGGACAGCACCTGGGGGGCCTGGGCCACCCCCATCCCGAAGATGAAAGGTTTGAACACAGACCTAGAGGGGCACAGATGGAAGCACGGAGATATATCAGATCCTCTCTTCTCCCCAGCCTTCCCCACCCTCATTCTTCCCACCTGGATGGGTCTGGCGTGGCGGTAAGAAAGTGCACGCAGGGCTGCGTGGGATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:47838336|47838583 hsa-miR-10a-5p 0 0 1
chr17:47838336|47838583 hsa-miR-10a-3p 0 0 1
chr17:47838336|47838583 hsa-miR-10b-5p 0 0 1
chr17:47838336|47838583 hsa-miR-10b-3p 0 0 1
chr17:47838336|47838583 hsa-miR-504-5p 0 0 1
chr17:47838336|47838583 hsa-miR-504-3p 0 0 1
chr17:47838336|47838583 hsa-miR-608 0 0 1
chr17:47838336|47838583 hsa-miR-626 0 0 1
chr17:47838336|47838583 hsa-miR-662 0 0 1
chr17:47838336|47838583 hsa-miR-939-5p 0 0 1
chr17:47838336|47838583 hsa-miR-939-3p 0 0 1
chr17:47838336|47838583 hsa-miR-663b 1 0 1
chr17:47838336|47838583 hsa-miR-1253 0 0 1
chr17:47838336|47838583 hsa-miR-491-5p 0 0 1
chr17:47838336|47838583 hsa-miR-525-5p 0 0 1
chr17:47838336|47838583 hsa-miR-361-3p 0 1 1
chr17:47838336|47838583 hsa-miR-324-3p 0 0 1
chr17:47838336|47838583 hsa-miR-520a-5p 0 0 1
chr17:47838336|47838583 hsa-miR-516a-3p 0 0 1
chr17:47838336|47838583 hsa-miR-1274b 0 0 1
chr17:47838336|47838583 hsa-miR-768-5p 0 0 1
chr17:47838336|47838583 hsa-miR-1538 1 0 0
chr17:47838336|47838583 hsa-miR-3147 1 0 0
chr17:47838336|47838583 hsa-miR-3181 1 0 0
chr17:47838336|47838583 hsa-miR-4271 1 0 0
chr17:47838336|47838583 hsa-miR-4651 1 0 0
chr17:47838336|47838583 hsa-miR-4739 1 0 0
chr17:47838336|47838583 hsa-miR-5703 0 1 0
chr17:47838336|47838583 hsa-miR-5787 1 1 0
chr17:47838336|47838583 hsa-miR-6075 1 0 0
chr17:47838336|47838583 hsa-miR-6133 1 0 0
chr17:47838336|47838583 hsa-miR-6745 1 0 0
chr17:47838336|47838583 hsa-miR-8089 0 1 0
chr17:47838336|47838583 hsa-miR-4747-3p 1 0 0
chr17:47838336|47838583 hsa-miR-512-5p 0 1 0
chr17:47838336|47838583 hsa-miR-7106-5p 1 0 0
chr17:47838336|47838583 hsa-miR-6089 1 0 0
chr17:47838336|47838583 hsa-miR-6746-5p 1 0 0
chr17:47838336|47838583 hsa-miR-6748-5p 1 0 0
chr17:47838336|47838583 hsa-miR-4725-5p 0 1 0
chr17:47838336|47838583 hsa-miR-6732-5p 1 0 0
chr17:47838336|47838583 hsa-miR-6782-5p 1 0 0
chr17:47838336|47838583 hsa-miR-7109-5p 1 1 0
chr17:47838336|47838583 hsa-miR-6740-5p 1 0 0
chr17:47838336|47838583 hsa-miR-4787-5p 1 0 0
chr17:47838336|47838583 hsa-miR-149-3p 1 0 0
chr17:47838336|47838583 hsa-miR-6878-5p 0 1 0
chr17:47838336|47838583 hsa-miR-339-5p 1 0 0
chr17:47838336|47838583 hsa-miR-6889-3p 0 1 0
chr17:47838336|47838583 hsa-miR-1180-5p 1 0 0
chr17:47838336|47838583 hsa-miR-6752-3p 0 1 0
chr17:47838336|47838583 hsa-miR-3605-3p 1 0 0
chr17:47838336|47838583 hsa-miR-4749-3p 1 0 0
chr17:47838336|47838583 hsa-miR-5197-3p 0 1 0
chr17:47838336|47838583 hsa-miR-6769b-5p 1 0 0
chr17:47838336|47838583 hsa-miR-6812-5p 1 0 0
chr17:47838336|47838583 hsa-miR-6870-5p 1 0 0
chr17:47838336|47838583 hsa-miR-6752-5p 1 1 0
chr17:47838336|47838583 hsa-miR-6756-5p 1 1 0
chr17:47838336|47838583 hsa-miR-6803-5p 1 1 0
chr17:47838336|47838583 hsa-miR-6842-5p 0 1 0
chr17:47838336|47838583 hsa-miR-7110-5p 1 1 0
chr17:47838336|47838583 hsa-miR-6751-5p 1 1 0
chr17:47838336|47838583 hsa-miR-6763-5p 1 1 0
chr17:47838336|47838583 hsa-miR-6797-5p 1 0 0
chr17:47838336|47838583 hsa-miR-5196-5p 1 1 0
chr17:47838336|47838583 hsa-miR-6780b-5p 1 1 0
chr17:47838336|47838583 hsa-miR-328-5p 1 0 0
chr17:47838336|47838583 hsa-miR-4725-3p 0 1 0
chr17:47838336|47838583 hsa-miR-6795-5p 1 0 0
chr17:47838336|47838583 hsa-miR-6887-5p 1 0 0
chr17:47838336|47838583 hsa-miR-4723-5p 0 1 0
chr17:47838336|47838583 hsa-miR-10396a-3p 1 0 0
chr17:47838336|47838583 hsa-miR-6856-5p 0 1 0
chr17:47838336|47838583 hsa-miR-6799-3p 1 0 0
chr17:47838336|47838583 hsa-miR-5008-3p 1 0 0
chr17:47838336|47838583 hsa-miR-4700-5p 0 1 0
chr17:47838336|47838583 hsa-miR-4667-5p 1 1 0
chr17:47838336|47838583 hsa-miR-7107-3p 0 1 0
chr17:47838336|47838583 hsa-miR-6775-3p 1 0 0
chr17:47838336|47838583 hsa-miR-330-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:47838336|47838583
ORF Type ORF1
Protein Length 82
Nucleotide Length 246
Protein Sequence LSLESGQGPNRVLCSKSGGQHLGGLGHPHPEDERFEHRPRGAQMEARRYIRSSLLPSLPHPHSSHLDGSGVAVRKCTQGCVG
Nucleotide Sequence CTGAGTCTGGAATCGGGGCAGGGTCCGAACAGGGTCTTGTGCTCCAAAAGTGGGGGACAGCACCTGGGGGGCCTGGGCCACCCCCATCCCGAAGATGAAAGGTTTGAACACAGACCTAGAGGGGCACAGATGGAAGCACGGAGATATATCAGATCCTCTCTTCTCCCCAGCCTTCCCCACCCTCATTCTTCCCACCTGGATGGGTCTGGCGTGGCGGTAAGAAAGTGCACGCAGGGCTGCGTGGGA
CircID chr17:47838336|47838583
ORF Type ORF2
Protein Length 41
Nucleotide Length 126
Protein Sequence MKGLNTDLEGHRWKHGDISDPLFSPAFPTLILPTWMGLAWR
Nucleotide Sequence ATGAAAGGTTTGAACACAGACCTAGAGGGGCACAGATGGAAGCACGGAGATATATCAGATCCTCTCTTCTCCCCAGCCTTCCCCACCCTCATTCTTCCCACCTGGATGGGTCTGGCGTGGCGGTAA
CircID chr17:47838336|47838583
ORF Type ORF3
Protein Length 56
Nucleotide Length 168
Protein Sequence MGRREDLIYLRASICAPLGLCSNLSSSGWGWPRPPRCCPPLLEHKTLFGPCPDSRL
Nucleotide Sequence CTGGGGAGAAGAGAGGATCTGATATATCTCCGTGCTTCCATCTGTGCCCCTCTAGGTCTGTGTTCAAACCTTTCATCTTCGGGATGGGGGTGGCCCAGGCCCCCCAGGTGCTGTCCCCCACTTTTGGAGCACAAGACCCTGTTCGGACCCTGCCCCGATTCCAGACTC
CircID chr17:47838336|47838583
ORF Type ORF4
Protein Length 78
Nucleotide Length 234
Protein Sequence MRALSYRHARPIQVGRMRVGKAGEKRGSDISPCFHLCPSRSVFKPFIFGMGVAQAPQVLSPTFGAQDPVRTLPRFQTQ
Nucleotide Sequence CTGCGTGCACTTTCTTACCGCCACGCCAGACCCATCCAGGTGGGAAGAATGAGGGTGGGGAAGGCTGGGGAGAAGAGAGGATCTGATATATCTCCGTGCTTCCATCTGTGCCCCTCTAGGTCTGTGTTCAAACCTTTCATCTTCGGGATGGGGGTGGCCCAGGCCCCCCAGGTGCTGTCCCCCACTTTTGGAGCACAAGACCCTGTTCGGACCCTGCCCCGATTCCAGACTCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab