CircRNA Information

General Information
circRNA Basic Information
CircID chr17:47975877|47976037
Strand +
CircType exon
Host Gene ENSG00000108465.13;
Algorism CIRI2;
Sequence AGCTCATCACAAGGCCCATCTTACCGCATCTTCTGCCACCTGCTCAGGAAGCTCCTCGAGGTGGGGTCGTTCCACCACAGAGGGCTCTGTCCCTGTCCTCCACTCGTACACCGTTGAGTTTCCCCGCTTCTGCACGAACCGCAGCATTGGCAACACCTGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:47975877|47976037 hsa-miR-95-5p 0 0 1
chr17:47975877|47976037 hsa-miR-95-3p 0 0 1
chr17:47975877|47976037 hsa-miR-517-5p 0 0 1
chr17:47975877|47976037 hsa-miR-517a-3p 0 0 1
chr17:47975877|47976037 hsa-miR-517b-3p 0 0 1
chr17:47975877|47976037 hsa-miR-517c-3p 0 0 1
chr17:47975877|47976037 hsa-miR-611 0 0 1
chr17:47975877|47976037 hsa-miR-765 0 0 1
chr17:47975877|47976037 hsa-miR-298 1 1 1
chr17:47975877|47976037 hsa-miR-708-5p 0 0 1
chr17:47975877|47976037 hsa-miR-708-3p 0 0 1
chr17:47975877|47976037 hsa-miR-1200 0 0 1
chr17:47975877|47976037 hsa-miR-1224-3p 0 0 1
chr17:47975877|47976037 hsa-miR-28-5p 0 0 1
chr17:47975877|47976037 hsa-miR-556-5p 0 0 1
chr17:47975877|47976037 hsa-miR-516a-3p 0 0 1
chr17:47975877|47976037 hsa-miR-151-5p 0 0 1
chr17:47975877|47976037 hsa-miR-1233 0 0 1
chr17:47975877|47976037 hsa-miR-151b 0 1 0
chr17:47975877|47976037 hsa-miR-3131 1 0 0
chr17:47975877|47976037 hsa-miR-3665 1 1 0
chr17:47975877|47976037 hsa-miR-4467 1 0 0
chr17:47975877|47976037 hsa-miR-4647 1 1 0
chr17:47975877|47976037 hsa-miR-4706 1 1 0
chr17:47975877|47976037 hsa-miR-6165 1 0 0
chr17:47975877|47976037 hsa-miR-6745 1 0 0
chr17:47975877|47976037 hsa-miR-6860 1 0 0
chr17:47975877|47976037 hsa-miR-12115 1 1 0
chr17:47975877|47976037 hsa-miR-211-3p 0 1 0
chr17:47975877|47976037 hsa-miR-4433b-3p 1 0 0
chr17:47975877|47976037 hsa-miR-504-3p 1 0 0
chr17:47975877|47976037 hsa-miR-6765-5p 1 0 0
chr17:47975877|47976037 hsa-miR-6894-5p 1 1 0
chr17:47975877|47976037 hsa-miR-6089 1 0 0
chr17:47975877|47976037 hsa-miR-6880-5p 1 1 0
chr17:47975877|47976037 hsa-miR-7847-3p 1 1 0
chr17:47975877|47976037 hsa-miR-4695-5p 1 0 0
chr17:47975877|47976037 hsa-miR-6721-5p 1 0 0
chr17:47975877|47976037 hsa-miR-7845-5p 1 1 0
chr17:47975877|47976037 hsa-miR-6732-5p 1 0 0
chr17:47975877|47976037 hsa-miR-2467-3p 1 1 0
chr17:47975877|47976037 hsa-miR-6782-5p 1 0 0
chr17:47975877|47976037 hsa-miR-6810-5p 1 0 0
chr17:47975877|47976037 hsa-miR-1226-5p 1 0 0
chr17:47975877|47976037 hsa-miR-6501-5p 1 1 0
chr17:47975877|47976037 hsa-miR-6800-5p 1 0 0
chr17:47975877|47976037 hsa-miR-7112-5p 1 0 0
chr17:47975877|47976037 hsa-miR-6869-5p 1 0 0
chr17:47975877|47976037 hsa-miR-3158-3p 1 0 0
chr17:47975877|47976037 hsa-miR-5004-5p 0 1 0
chr17:47975877|47976037 hsa-miR-1244 1 0 0
chr17:47975877|47976037 hsa-miR-10400-5p 1 0 0
chr17:47975877|47976037 hsa-miR-4763-3p 1 0 0
chr17:47975877|47976037 hsa-miR-6812-5p 1 0 0
chr17:47975877|47976037 hsa-miR-6865-5p 1 1 0
chr17:47975877|47976037 hsa-miR-6893-5p 1 0 0
chr17:47975877|47976037 hsa-miR-1343-5p 1 0 0
chr17:47975877|47976037 hsa-miR-6743-5p 1 0 0
chr17:47975877|47976037 hsa-miR-6815-5p 1 1 0
chr17:47975877|47976037 hsa-miR-6851-5p 1 0 0
chr17:47975877|47976037 hsa-miR-6788-5p 1 0 0
chr17:47975877|47976037 hsa-miR-6797-5p 1 0 0
chr17:47975877|47976037 hsa-miR-6879-5p 1 0 0
chr17:47975877|47976037 hsa-miR-7111-5p 1 0 0
chr17:47975877|47976037 hsa-miR-3620-5p 1 0 0
chr17:47975877|47976037 hsa-miR-5189-5p 1 0 0
chr17:47975877|47976037 hsa-miR-6780b-5p 1 0 0
chr17:47975877|47976037 hsa-miR-328-5p 1 0 0
chr17:47975877|47976037 hsa-miR-4749-5p 1 1 0
chr17:47975877|47976037 hsa-miR-675-5p 1 0 0
chr17:47975877|47976037 hsa-miR-6777-5p 1 0 0
chr17:47975877|47976037 hsa-miR-6794-5p 1 0 0
chr17:47975877|47976037 hsa-miR-6795-5p 1 0 0
chr17:47975877|47976037 hsa-miR-3187-5p 1 0 0
chr17:47975877|47976037 hsa-miR-4758-5p 1 0 0
chr17:47975877|47976037 hsa-miR-6511a-5p 1 0 0
chr17:47975877|47976037 hsa-miR-7843-5p 1 0 0
chr17:47975877|47976037 hsa-miR-10392-3p 1 1 0
chr17:47975877|47976037 hsa-miR-3150b-5p 0 1 0
chr17:47975877|47976037 hsa-miR-6500-5p 1 0 0
chr17:47975877|47976037 hsa-miR-151a-5p 0 1 0
chr17:47975877|47976037 hsa-miR-4781-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:47975877|47976037
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MLRKLLEVGSFHHRGLCPCPPLVHR
Nucleotide Sequence CTGCTCAGGAAGCTCCTCGAGGTGGGGTCGTTCCACCACAGAGGGCTCTGTCCCTGTCCTCCACTCGTACACCGTTGA
CircID chr17:47975877|47976037
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MPPAQEAPRGGVVPPQRALSLSSTRTPLSFPASARTAALATPA
Nucleotide Sequence CTGCCACCTGCTCAGGAAGCTCCTCGAGGTGGGGTCGTTCCACCACAGAGGGCTCTGTCCCTGTCCTCCACTCGTACACCGTTGAGTTTCCCCGCTTCTGCACGAACCGCAGCATTGGCAACACCTGCT
CircID chr17:47975877|47976037
ORF Type ORF3
Protein Length 48
Nucleotide Length 147
Protein Sequence MPMLRFVQKRGNSTVYEWRTGTEPSVVERPHLEELPEQVAEDAVRWAL
Nucleotide Sequence TTGCCAATGCTGCGGTTCGTGCAGAAGCGGGGAAACTCAACGGTGTACGAGTGGAGGACAGGGACAGAGCCCTCTGTGGTGGAACGACCCCACCTCGAGGAGCTTCCTGAGCAGGTGGCAGAAGATGCGGTAAGATGGGCCTTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab