CircRNA Information

General Information
circRNA Basic Information
CircID chr17:48050877|48051006
Strand +
CircType exon
Host Gene ENSG00000082641.14;
Algorism CIRI2;
Sequence CCCGTACCCCACCCTGGCAGAACACAAGGGATGAGCTCCCTGACGGCCCCAGAGGAAAGCACACCCTGTGGAGCCAAGGCCAAGGACACACTCCAGACCACATTCACTTTCCCTTCTCGACACCTCACCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:48050877|48051006 hsa-miR-122-5p 0 0 1
chr17:48050877|48051006 hsa-miR-122-3p 0 0 1
chr17:48050877|48051006 hsa-miR-326 0 1 1
chr17:48050877|48051006 hsa-miR-581 0 1 1
chr17:48050877|48051006 hsa-miR-623 0 0 1
chr17:48050877|48051006 hsa-miR-636 0 0 1
chr17:48050877|48051006 hsa-miR-637 0 0 1
chr17:48050877|48051006 hsa-miR-920 0 0 1
chr17:48050877|48051006 hsa-miR-1238-5p 0 0 1
chr17:48050877|48051006 hsa-miR-1238-3p 0 0 1
chr17:48050877|48051006 hsa-miR-1294 0 0 1
chr17:48050877|48051006 hsa-miR-1257 0 1 1
chr17:48050877|48051006 hsa-miR-574-5p 1 1 1
chr17:48050877|48051006 hsa-miR-188-5p 0 0 1
chr17:48050877|48051006 hsa-miR-330-5p 0 1 1
chr17:48050877|48051006 hsa-miR-220c 0 0 1
chr17:48050877|48051006 hsa-miR-218 0 0 1
chr17:48050877|48051006 hsa-miR-516b 0 0 1
chr17:48050877|48051006 hsa-miR-658 1 0 0
chr17:48050877|48051006 hsa-miR-760 1 0 0
chr17:48050877|48051006 hsa-miR-1293 1 0 0
chr17:48050877|48051006 hsa-miR-1265 1 0 0
chr17:48050877|48051006 hsa-miR-3153 0 1 0
chr17:48050877|48051006 hsa-miR-3154 0 1 0
chr17:48050877|48051006 hsa-miR-4270 1 0 0
chr17:48050877|48051006 hsa-miR-3909 0 1 0
chr17:48050877|48051006 hsa-miR-4491 1 0 0
chr17:48050877|48051006 hsa-miR-4657 1 0 0
chr17:48050877|48051006 hsa-miR-4658 1 1 0
chr17:48050877|48051006 hsa-miR-4710 1 0 0
chr17:48050877|48051006 hsa-miR-4741 1 0 0
chr17:48050877|48051006 hsa-miR-5572 1 0 0
chr17:48050877|48051006 hsa-miR-6085 1 0 0
chr17:48050877|48051006 hsa-miR-7515 0 1 0
chr17:48050877|48051006 hsa-miR-6734-5p 1 0 0
chr17:48050877|48051006 hsa-miR-6747-5p 1 0 0
chr17:48050877|48051006 hsa-miR-212-5p 0 1 0
chr17:48050877|48051006 hsa-miR-6825-5p 1 0 0
chr17:48050877|48051006 hsa-miR-219a-1-3p 1 0 0
chr17:48050877|48051006 hsa-miR-29b-2-5p 0 1 0
chr17:48050877|48051006 hsa-miR-6799-5p 1 0 0
chr17:48050877|48051006 hsa-miR-6796-5p 1 0 0
chr17:48050877|48051006 hsa-miR-5006-5p 0 1 0
chr17:48050877|48051006 hsa-miR-4764-5p 1 0 0
chr17:48050877|48051006 hsa-miR-7854-3p 1 0 0
chr17:48050877|48051006 hsa-miR-425-3p 1 0 0
chr17:48050877|48051006 hsa-miR-6824-5p 1 0 0
chr17:48050877|48051006 hsa-miR-3162-5p 1 0 0
chr17:48050877|48051006 hsa-miR-3670 0 1 0
chr17:48050877|48051006 hsa-miR-6812-5p 1 1 0
chr17:48050877|48051006 hsa-miR-1343-5p 1 0 0
chr17:48050877|48051006 hsa-miR-6737-5p 1 0 0
chr17:48050877|48051006 hsa-miR-6752-5p 1 0 0
chr17:48050877|48051006 hsa-miR-6819-5p 1 0 0
chr17:48050877|48051006 hsa-miR-7110-5p 1 0 0
chr17:48050877|48051006 hsa-miR-1249-5p 1 0 0
chr17:48050877|48051006 hsa-miR-6763-5p 1 0 0
chr17:48050877|48051006 hsa-miR-5196-5p 1 0 0
chr17:48050877|48051006 hsa-miR-6780b-5p 1 0 0
chr17:48050877|48051006 hsa-miR-4745-5p 1 0 0
chr17:48050877|48051006 hsa-miR-6777-5p 1 0 0
chr17:48050877|48051006 hsa-miR-6889-5p 1 0 0
chr17:48050877|48051006 hsa-miR-939-5p 1 0 0
chr17:48050877|48051006 hsa-miR-4769-5p 1 0 0
chr17:48050877|48051006 hsa-miR-6758-5p 1 0 0
chr17:48050877|48051006 hsa-miR-4747-5p 1 1 0
chr17:48050877|48051006 hsa-miR-6891-5p 1 0 0
chr17:48050877|48051006 hsa-miR-6790-5p 1 1 0
chr17:48050877|48051006 hsa-miR-6849-5p 1 1 0
chr17:48050877|48051006 hsa-miR-6753-3p 1 0 0
chr17:48050877|48051006 hsa-miR-3059-5p 0 1 0
chr17:48050877|48051006 hsa-miR-548az-5p 0 1 0
chr17:48050877|48051006 hsa-miR-549a-5p 0 1 0
chr17:48050877|48051006 hsa-miR-548t-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:48050877|48051006
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MSSLTAPEESTPCGAKAKDTLQTTFTFPSRHLT
Nucleotide Sequence ATGAGCTCCCTGACGGCCCCAGAGGAAAGCACACCCTGTGGAGCCAAGGCCAAGGACACACTCCAGACCACATTCACTTTCCCTTCTCGACACCTCACC
CircID chr17:48050877|48051006
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MWSGVCPWPWLHRVCFPLGPSGSSSLVFCQGGVR
Nucleotide Sequence ATGTGGTCTGGAGTGTGTCCTTGGCCTTGGCTCCACAGGGTGTGCTTTCCTCTGGGGCCGTCAGGGAGCTCATCCCTTGTGTTCTGCCAGGGTGGGGTACGG
CircID chr17:48050877|48051006
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MECVLGLGSTGCAFLWGRQGAHPLCSARVGYG
Nucleotide Sequence CTGGAGTGTGTCCTTGGCCTTGGCTCCACAGGGTGTGCTTTCCTCTGGGGCCGTCAGGGAGCTCATCCCTTGTGTTCTGCCAGGGTGGGGTACGGG
CircID chr17:48050877|48051006
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MALAPQGVLSSGAVRELIPCVLPGWGT
Nucleotide Sequence TTGGCCTTGGCTCCACAGGGTGTGCTTTCCTCTGGGGCCGTCAGGGAGCTCATCCCTTGTGTTCTGCCAGGGTGGGGTACG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab