CircRNA Information

General Information
circRNA Basic Information
CircID chr17:48050884|48051023
Strand +
CircType exon
Host Gene ENSG00000082641.14;
Algorism CIRI2;
Sequence CCTCCTCAGTGTCAAACCCCGTACCCCACCCTGGCAGAACACAAGGGATGAGCTCCCTGACGGCCCCAGAGGAAAGCACACCCTGTGGAGCCAAGGCCAAGGACACACTCCAGACCACATTCACTTTCCCTTCTCGACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:48050884|48051023 hsa-miR-122-5p 0 0 1
chr17:48050884|48051023 hsa-miR-122-3p 0 0 1
chr17:48050884|48051023 hsa-miR-326 0 1 1
chr17:48050884|48051023 hsa-miR-581 0 1 1
chr17:48050884|48051023 hsa-miR-623 0 0 1
chr17:48050884|48051023 hsa-miR-636 0 0 1
chr17:48050884|48051023 hsa-miR-637 0 0 1
chr17:48050884|48051023 hsa-miR-920 0 0 1
chr17:48050884|48051023 hsa-miR-1238-5p 0 0 1
chr17:48050884|48051023 hsa-miR-1238-3p 0 0 1
chr17:48050884|48051023 hsa-miR-1257 0 1 1
chr17:48050884|48051023 hsa-miR-574-5p 1 1 1
chr17:48050884|48051023 hsa-miR-188-5p 0 0 1
chr17:48050884|48051023 hsa-miR-330-5p 0 1 1
chr17:48050884|48051023 hsa-miR-220c 0 0 1
chr17:48050884|48051023 hsa-miR-218 0 0 1
chr17:48050884|48051023 hsa-miR-514 0 0 1
chr17:48050884|48051023 hsa-miR-516b 0 0 1
chr17:48050884|48051023 hsa-miR-658 1 0 0
chr17:48050884|48051023 hsa-miR-762 1 0 0
chr17:48050884|48051023 hsa-miR-760 1 0 0
chr17:48050884|48051023 hsa-miR-1293 1 0 0
chr17:48050884|48051023 hsa-miR-1265 1 0 0
chr17:48050884|48051023 hsa-miR-3141 1 0 0
chr17:48050884|48051023 hsa-miR-3153 0 1 0
chr17:48050884|48051023 hsa-miR-3154 0 1 0
chr17:48050884|48051023 hsa-miR-4270 1 0 0
chr17:48050884|48051023 hsa-miR-3909 0 1 0
chr17:48050884|48051023 hsa-miR-4466 1 0 0
chr17:48050884|48051023 hsa-miR-4488 1 0 0
chr17:48050884|48051023 hsa-miR-4491 1 0 0
chr17:48050884|48051023 hsa-miR-4651 1 0 0
chr17:48050884|48051023 hsa-miR-4657 1 0 0
chr17:48050884|48051023 hsa-miR-4658 1 1 0
chr17:48050884|48051023 hsa-miR-4741 1 0 0
chr17:48050884|48051023 hsa-miR-5194 1 0 0
chr17:48050884|48051023 hsa-miR-5787 1 0 0
chr17:48050884|48051023 hsa-miR-6085 1 0 0
chr17:48050884|48051023 hsa-miR-7515 0 1 0
chr17:48050884|48051023 hsa-miR-92a-2-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6734-5p 1 0 0
chr17:48050884|48051023 hsa-miR-212-5p 0 1 0
chr17:48050884|48051023 hsa-miR-29b-2-5p 0 1 0
chr17:48050884|48051023 hsa-miR-6890-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6742-5p 1 0 0
chr17:48050884|48051023 hsa-miR-491-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6716-5p 1 0 0
chr17:48050884|48051023 hsa-miR-3151-5p 1 0 0
chr17:48050884|48051023 hsa-miR-1292-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6796-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6881-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6782-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6821-5p 1 0 0
chr17:48050884|48051023 hsa-miR-5006-5p 1 1 0
chr17:48050884|48051023 hsa-miR-6786-5p 1 0 0
chr17:48050884|48051023 hsa-miR-4764-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6823-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6824-5p 1 0 0
chr17:48050884|48051023 hsa-miR-3162-5p 1 0 0
chr17:48050884|48051023 hsa-miR-1225-5p 1 0 0
chr17:48050884|48051023 hsa-miR-3670 0 1 0
chr17:48050884|48051023 hsa-miR-6769b-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6812-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6816-5p 1 0 0
chr17:48050884|48051023 hsa-miR-1343-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6737-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6752-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6754-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6756-5p 1 1 0
chr17:48050884|48051023 hsa-miR-6769a-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6819-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6722-3p 1 0 0
chr17:48050884|48051023 hsa-miR-5196-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6780b-5p 1 0 0
chr17:48050884|48051023 hsa-miR-1237-5p 1 0 0
chr17:48050884|48051023 hsa-miR-4685-5p 1 0 0
chr17:48050884|48051023 hsa-miR-4745-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6738-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6777-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6889-5p 1 0 0
chr17:48050884|48051023 hsa-miR-939-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6758-5p 1 0 0
chr17:48050884|48051023 hsa-miR-4665-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6855-5p 1 0 0
chr17:48050884|48051023 hsa-miR-4747-5p 1 1 0
chr17:48050884|48051023 hsa-miR-6766-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6790-5p 1 1 0
chr17:48050884|48051023 hsa-miR-6849-5p 1 1 0
chr17:48050884|48051023 hsa-miR-342-5p 1 0 0
chr17:48050884|48051023 hsa-miR-6753-3p 1 0 0
chr17:48050884|48051023 hsa-miR-3059-5p 0 1 0
chr17:48050884|48051023 hsa-miR-548az-5p 0 1 0
chr17:48050884|48051023 hsa-miR-549a-5p 0 1 0
chr17:48050884|48051023 hsa-miR-548t-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:48050884|48051023
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MSSLTAPEESTPCGAKAKDTLQTTFTFPSRH
Nucleotide Sequence ATGAGCTCCCTGACGGCCCCAGAGGAAAGCACACCCTGTGGAGCCAAGGCCAAGGACACACTCCAGACCACATTCACTTTCCCTTCTCGACAC
CircID chr17:48050884|48051023
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MECVLGLGSTGCAFLWGRQGAHPLCSARVGYGV
Nucleotide Sequence CTGGAGTGTGTCCTTGGCCTTGGCTCCACAGGGTGTGCTTTCCTCTGGGGCCGTCAGGGAGCTCATCCCTTGTGTTCTGCCAGGGTGGGGTACGGGGTTTGA
CircID chr17:48050884|48051023
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MALAPQGVLSSGAVRELIPCVLPGWGTGFDTEE
Nucleotide Sequence TTGGCCTTGGCTCCACAGGGTGTGCTTTCCTCTGGGGCCGTCAGGGAGCTCATCCCTTGTGTTCTGCCAGGGTGGGGTACGGGGTTTGACACTGAGGAG
CircID chr17:48050884|48051023
ORF Type ORF4
Protein Length 40
Nucleotide Length 120
Protein Sequence MWSGVCPWPWLHRVCFPLGPSGSSSLVFCQGGVRGLTLRR
Nucleotide Sequence ATGTGGTCTGGAGTGTGTCCTTGGCCTTGGCTCCACAGGGTGTGCTTTCCTCTGGGGCCGTCAGGGAGCTCATCCCTTGTGTTCTGCCAGGGTGGGGTACGGGGTTTGACACTGAGGAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab