CircRNA Information

General Information
circRNA Basic Information
CircID chr17:48057097|48057398
Strand -
CircType exon
Host Gene ENSG00000082641.14;
Algorism CIRI2;
Sequence CTGCCCCTTTGGGGAGAATGCTGAGGTGAGCAGGACTCCAGTGAGAGTCCACCAAGTGAGCAGGGCAGCCTGTACCTGGTGTGTCCCTCCATGGCTGAGGGGCCAGCTGTTGGTTCTGGCCTTATTCTGGCTGCTGGGGGTAAATGCAGAGGAAGGAAGAACAGAAACAGGTCCAGGTGGTAATCTCTGGGAGGAAAGCACAAGGTTTTTCCTTCCCCCTTGTTAAAGCCTCTGTGTTTTGCCCTAGTTTCCAGCAGACATTTCCAGCATAACAGAAGCAGTGCCTAGTGAGAGTGAGCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:48057097|48057398 hsa-miR-370-5p 0 0 1
chr17:48057097|48057398 hsa-miR-370-3p 0 0 1
chr17:48057097|48057398 hsa-miR-346 0 0 1
chr17:48057097|48057398 hsa-miR-492 0 0 1
chr17:48057097|48057398 hsa-miR-619-5p 0 0 1
chr17:48057097|48057398 hsa-miR-619-3p 0 0 1
chr17:48057097|48057398 hsa-miR-625-5p 0 0 1
chr17:48057097|48057398 hsa-miR-625-3p 0 0 1
chr17:48057097|48057398 hsa-miR-632 0 0 1
chr17:48057097|48057398 hsa-miR-636 0 0 1
chr17:48057097|48057398 hsa-miR-874-5p 0 0 1
chr17:48057097|48057398 hsa-miR-874-3p 0 0 1
chr17:48057097|48057398 hsa-miR-1178-5p 0 0 1
chr17:48057097|48057398 hsa-miR-1178-3p 0 0 1
chr17:48057097|48057398 hsa-miR-1179 0 1 1
chr17:48057097|48057398 hsa-miR-1238-5p 0 0 1
chr17:48057097|48057398 hsa-miR-1238-3p 0 0 1
chr17:48057097|48057398 hsa-miR-1287-5p 0 0 1
chr17:48057097|48057398 hsa-miR-1287-3p 0 0 1
chr17:48057097|48057398 hsa-miR-1252-5p 0 0 1
chr17:48057097|48057398 hsa-miR-1252-3p 0 0 1
chr17:48057097|48057398 hsa-miR-486-3p 0 0 1
chr17:48057097|48057398 hsa-miR-146b-3p 0 0 1
chr17:48057097|48057398 hsa-miR-1289 0 1 1
chr17:48057097|48057398 hsa-miR-361-3p 0 0 1
chr17:48057097|48057398 hsa-miR-1207-3p 0 1 1
chr17:48057097|48057398 hsa-miR-654-3p 0 1 1
chr17:48057097|48057398 hsa-miR-767-3p 0 1 1
chr17:48057097|48057398 hsa-miR-875-3p 0 0 1
chr17:48057097|48057398 hsa-miR-362-3p 0 0 1
chr17:48057097|48057398 hsa-miR-548d-3p 0 0 1
chr17:48057097|48057398 hsa-miR-218 0 0 1
chr17:48057097|48057398 hsa-miR-329 0 0 1
chr17:48057097|48057398 hsa-miR-612 1 1 0
chr17:48057097|48057398 hsa-miR-4271 0 1 0
chr17:48057097|48057398 hsa-miR-3135b 1 0 0
chr17:48057097|48057398 hsa-miR-4498 1 0 0
chr17:48057097|48057398 hsa-miR-5093 1 1 0
chr17:48057097|48057398 hsa-miR-8089 1 0 0
chr17:48057097|48057398 hsa-miR-12124 1 0 0
chr17:48057097|48057398 hsa-miR-12125 0 1 0
chr17:48057097|48057398 hsa-miR-150-3p 1 0 0
chr17:48057097|48057398 hsa-miR-6749-3p 1 0 0
chr17:48057097|48057398 hsa-miR-4687-3p 1 0 0
chr17:48057097|48057398 hsa-miR-27a-5p 1 0 0
chr17:48057097|48057398 hsa-miR-593-5p 1 0 0
chr17:48057097|48057398 hsa-miR-6875-3p 0 1 0
chr17:48057097|48057398 hsa-miR-3126-5p 0 1 0
chr17:48057097|48057398 hsa-miR-6765-3p 1 0 0
chr17:48057097|48057398 hsa-miR-939-3p 1 0 0
chr17:48057097|48057398 hsa-miR-7109-5p 1 0 0
chr17:48057097|48057398 hsa-miR-4640-5p 0 1 0
chr17:48057097|48057398 hsa-miR-3667-3p 0 1 0
chr17:48057097|48057398 hsa-miR-3614-5p 1 0 0
chr17:48057097|48057398 hsa-miR-4756-3p 0 1 0
chr17:48057097|48057398 hsa-miR-6780a-3p 0 1 0
chr17:48057097|48057398 hsa-miR-4638-3p 1 0 0
chr17:48057097|48057398 hsa-miR-6739-3p 0 1 0
chr17:48057097|48057398 hsa-miR-1304-3p 0 1 0
chr17:48057097|48057398 hsa-miR-4733-3p 0 1 0
chr17:48057097|48057398 hsa-miR-3922-5p 1 1 0
chr17:48057097|48057398 hsa-miR-1237-3p 1 0 0
chr17:48057097|48057398 hsa-miR-6813-3p 1 0 0
chr17:48057097|48057398 hsa-miR-6778-3p 0 1 0
chr17:48057097|48057398 hsa-miR-653-3p 0 1 0
chr17:48057097|48057398 hsa-miR-6794-3p 0 1 0
chr17:48057097|48057398 hsa-miR-3173-5p 0 1 0
chr17:48057097|48057398 hsa-miR-4639-3p 0 1 0
chr17:48057097|48057398 hsa-miR-6838-3p 0 1 0
chr17:48057097|48057398 hsa-miR-7158-5p 1 0 0
chr17:48057097|48057398 hsa-miR-4802-5p 0 1 0
chr17:48057097|48057398 hsa-miR-550b-3p 1 0 0
chr17:48057097|48057398 hsa-let-7g-3p 1 0 0
chr17:48057097|48057398 hsa-miR-6797-5p 0 1 0
chr17:48057097|48057398 hsa-miR-6875-5p 0 1 0
chr17:48057097|48057398 hsa-miR-7111-5p 0 1 0
chr17:48057097|48057398 hsa-miR-3620-5p 1 0 0
chr17:48057097|48057398 hsa-miR-6735-5p 0 1 0
chr17:48057097|48057398 hsa-miR-6795-5p 0 1 0
chr17:48057097|48057398 hsa-miR-3198 0 1 0
chr17:48057097|48057398 hsa-miR-7151-3p 0 1 0
chr17:48057097|48057398 hsa-miR-4747-5p 0 1 0
chr17:48057097|48057398 hsa-miR-4716-3p 0 1 0
chr17:48057097|48057398 hsa-miR-6805-3p 1 0 0
chr17:48057097|48057398 hsa-miR-6775-3p 1 0 0
chr17:48057097|48057398 hsa-miR-4701-5p 1 0 0
chr17:48057097|48057398 hsa-miR-520f-3p 0 1 0
chr17:48057097|48057398 hsa-miR-6744-3p 1 0 0
chr17:48057097|48057398 hsa-miR-6783-3p 1 0 0
chr17:48057097|48057398 hsa-miR-664b-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:48057097|48057398
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MYLVCPSMAEGPAVGSGLILAAGGKCRGRKNRNRSRW
Nucleotide Sequence CTGTACCTGGTGTGTCCCTCCATGGCTGAGGGGCCAGCTGTTGGTTCTGGCCTTATTCTGGCTGCTGGGGGTAAATGCAGAGGAAGGAAGAACAGAAACAGGTCCAGGTGGTAA
CircID chr17:48057097|48057398
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MGGKHKVFPSPLLKPLCFALVSSRHFQHNRSSA
Nucleotide Sequence CTGGGAGGAAAGCACAAGGTTTTTCCTTCCCCCTTGTTAAAGCCTCTGTGTTTTGCCCTAGTTTCCAGCAGACATTTCCAGCATAACAGAAGCAGTGCCTAG
CircID chr17:48057097|48057398
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence MRGQLLVLALFWLLGVNAEEGRTETGPGGNLWEESTRFFLPPC
Nucleotide Sequence CTGAGGGGCCAGCTGTTGGTTCTGGCCTTATTCTGGCTGCTGGGGGTAAATGCAGAGGAAGGAAGAACAGAAACAGGTCCAGGTGGTAATCTCTGGGAGGAAAGCACAAGGTTTTTCCTTCCCCCTTGTTAA
CircID chr17:48057097|48057398
ORF Type ORF4
Protein Length 42
Nucleotide Length 129
Protein Sequence MQRKEEQKQVQVVISGRKAQGFSFPLVKASVFCPSFQQTFPA
Nucleotide Sequence ATGCAGAGGAAGGAAGAACAGAAACAGGTCCAGGTGGTAATCTCTGGGAGGAAAGCACAAGGTTTTTCCTTCCCCCTTGTTAAAGCCTCTGTGTTTTGCCCTAGTTTCCAGCAGACATTTCCAGCATAA
CircID chr17:48057097|48057398
ORF Type ORF5
Protein Length 93
Nucleotide Length 279
Protein Sequence MLLLCWKCLLETRAKHRGFNKGEGKTLCFPPRDYHLDLFLFFLPLHLPPAARIRPEPTAGPSAMEGHTRYRLPCSLGGLSLESCSPQHSPQRG
Nucleotide Sequence CTGCTTCTGTTATGCTGGAAATGTCTGCTGGAAACTAGGGCAAAACACAGAGGCTTTAACAAGGGGGAAGGAAAAACCTTGTGCTTTCCTCCCAGAGATTACCACCTGGACCTGTTTCTGTTCTTCCTTCCTCTGCATTTACCCCCAGCAGCCAGAATAAGGCCAGAACCAACAGCTGGCCCCTCAGCCATGGAGGGACACACCAGGTACAGGCTGCCCTGCTCACTTGGTGGACTCTCACTGGAGTCCTGCTCACCTCAGCATTCTCCCCAAAGGGGC
CircID chr17:48057097|48057398
ORF Type ORF6
Protein Length 35
Nucleotide Length 105
Protein Sequence MAPQPWRDTPGTGCPAHLVDSHWSPAHLSILPKGA
Nucleotide Sequence CTGGCCCCTCAGCCATGGAGGGACACACCAGGTACAGGCTGCCCTGCTCACTTGGTGGACTCTCACTGGAGTCCTGCTCACCTCAGCATTCTCCCCAAAGGGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab