CircRNA Information

General Information
circRNA Basic Information
CircID chr17:48058701|48058962
Strand +
CircType exon
Host Gene ENSG00000082641.14;
Algorism CIRI2;
Sequence TCAGGCTGGTAGCCCACAGCACCCTCGGCCTCTTCCAGATCCAGGGTCTCAGAGTCAGAGCTGTAGCCAACCGCACCTTCCTCAGAAAAGGAGGAAGAGGCAGAGGAAGAAGCAGAGGAAGAAGAGGAAGAGGAGGAGGAAGAAGAGGAAGAACTGCCTTCAGAGCTGCTTAGGGAAGAAGGGCTATGGCTCGAGTCTAAGGAAAGGCCTGAGTCAGAGTCAAATTCCTCCTCCAGCTGGGAGGCCTGCACAGGGTTAAAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:48058701|48058962 hsa-miR-18a-5p 0 0 1
chr17:48058701|48058962 hsa-miR-18a-3p 0 0 1
chr17:48058701|48058962 hsa-miR-10a-5p 0 0 1
chr17:48058701|48058962 hsa-miR-10a-3p 0 0 1
chr17:48058701|48058962 hsa-miR-10b-5p 0 0 1
chr17:48058701|48058962 hsa-miR-10b-3p 0 0 1
chr17:48058701|48058962 hsa-miR-345-5p 0 0 1
chr17:48058701|48058962 hsa-miR-345-3p 0 0 1
chr17:48058701|48058962 hsa-miR-18b-5p 0 0 1
chr17:48058701|48058962 hsa-miR-18b-3p 0 0 1
chr17:48058701|48058962 hsa-miR-504-5p 0 0 1
chr17:48058701|48058962 hsa-miR-504-3p 0 0 1
chr17:48058701|48058962 hsa-miR-510-5p 0 0 1
chr17:48058701|48058962 hsa-miR-510-3p 0 0 1
chr17:48058701|48058962 hsa-miR-634 0 0 1
chr17:48058701|48058962 hsa-miR-646 0 0 1
chr17:48058701|48058962 hsa-miR-765 0 0 1
chr17:48058701|48058962 hsa-miR-675-5p 0 0 1
chr17:48058701|48058962 hsa-miR-675-3p 0 0 1
chr17:48058701|48058962 hsa-miR-1236-5p 0 0 1
chr17:48058701|48058962 hsa-miR-1236-3p 0 0 1
chr17:48058701|48058962 hsa-miR-1299 0 0 1
chr17:48058701|48058962 hsa-miR-1248 0 0 1
chr17:48058701|48058962 hsa-miR-769-5p 0 0 1
chr17:48058701|48058962 hsa-miR-1207-3p 0 0 1
chr17:48058701|48058962 hsa-miR-875-3p 0 0 1
chr17:48058701|48058962 hsa-miR-7 0 0 1
chr17:48058701|48058962 hsa-miR-129-3p 0 0 1
chr17:48058701|48058962 hsa-miR-151-3p 0 0 1
chr17:48058701|48058962 hsa-miR-608 1 0 0
chr17:48058701|48058962 hsa-miR-3142 -7 1 0
chr17:48058701|48058962 hsa-miR-548v -9 1 0
chr17:48058701|48058962 hsa-miR-4296 0 1 0
chr17:48058701|48058962 hsa-miR-4322 0 1 0
chr17:48058701|48058962 hsa-miR-4326 1 0 0
chr17:48058701|48058962 hsa-miR-4265 0 1 0
chr17:48058701|48058962 hsa-miR-4268 1 0 0
chr17:48058701|48058962 hsa-miR-4277 -10 1 0
chr17:48058701|48058962 hsa-miR-4279 1 0 0
chr17:48058701|48058962 hsa-miR-4329 -3 1 0
chr17:48058701|48058962 hsa-miR-3921 -7 1 0
chr17:48058701|48058962 hsa-miR-4522 -13 1 0
chr17:48058701|48058962 hsa-miR-4660 -13 1 0
chr17:48058701|48058962 hsa-miR-5193 1 0 0
chr17:48058701|48058962 hsa-miR-7702 -9 1 0
chr17:48058701|48058962 hsa-miR-12119 -8 1 0
chr17:48058701|48058962 hsa-miR-134-3p -7 1 0
chr17:48058701|48058962 hsa-miR-103a-2-5p -14 1 0
chr17:48058701|48058962 hsa-miR-146a-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6749-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6881-3p 1 0 0
chr17:48058701|48058962 hsa-miR-766-5p -1 1 0
chr17:48058701|48058962 hsa-miR-6089 1 0 0
chr17:48058701|48058962 hsa-miR-6875-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6741-5p 1 0 0
chr17:48058701|48058962 hsa-miR-7110-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6845-3p 1 0 0
chr17:48058701|48058962 hsa-miR-4725-5p -13 1 0
chr17:48058701|48058962 hsa-miR-877-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6728-3p -14 1 0
chr17:48058701|48058962 hsa-miR-6882-3p 1 0 0
chr17:48058701|48058962 hsa-miR-4436b-5p 1 0 0
chr17:48058701|48058962 hsa-miR-5001-3p 1 0 0
chr17:48058701|48058962 hsa-miR-3667-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6818-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6809-3p 1 0 0
chr17:48058701|48058962 hsa-miR-7111-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6780a-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6830-3p 1 0 0
chr17:48058701|48058962 hsa-miR-1266-3p 1 0 0
chr17:48058701|48058962 hsa-miR-103b -9 1 0
chr17:48058701|48058962 hsa-miR-4778-3p 1 0 0
chr17:48058701|48058962 hsa-miR-1238-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6792-5p -4 1 0
chr17:48058701|48058962 hsa-miR-6886-3p -14 1 0
chr17:48058701|48058962 hsa-miR-5088-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6880-3p 1 0 0
chr17:48058701|48058962 hsa-miR-518c-5p 1 0 0
chr17:48058701|48058962 hsa-miR-5584-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6734-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6515-3p 1 0 0
chr17:48058701|48058962 hsa-miR-1249-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6732-3p 1 0 0
chr17:48058701|48058962 hsa-miR-4714-5p -11 1 0
chr17:48058701|48058962 hsa-miR-6885-3p 1 0 0
chr17:48058701|48058962 hsa-miR-4650-5p -4 1 0
chr17:48058701|48058962 hsa-miR-4763-3p 1 0 0
chr17:48058701|48058962 hsa-miR-11181-3p -9 1 0
chr17:48058701|48058962 hsa-miR-320a-5p 1 0 0
chr17:48058701|48058962 hsa-miR-6754-3p 1 0 0
chr17:48058701|48058962 hsa-miR-5196-5p 1 0 0
chr17:48058701|48058962 hsa-miR-4649-5p 1 0 0
chr17:48058701|48058962 hsa-miR-6731-5p -12 1 0
chr17:48058701|48058962 hsa-miR-2682-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6791-5p -13 1 0
chr17:48058701|48058962 hsa-miR-6756-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6792-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6829-3p 1 0 0
chr17:48058701|48058962 hsa-miR-3059-5p 1 0 0
chr17:48058701|48058962 hsa-miR-6529-3p -8 1 0
chr17:48058701|48058962 hsa-miR-6891-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6884-5p -12 1 0
chr17:48058701|48058962 hsa-miR-6781-3p -5 1 0
chr17:48058701|48058962 hsa-miR-196b-5p -10 1 0
chr17:48058701|48058962 hsa-miR-103a-1-5p -14 1 0
chr17:48058701|48058962 hsa-miR-6833-3p 1 0 0
chr17:48058701|48058962 hsa-miR-6811-5p -5 1 0
chr17:48058701|48058962 hsa-miR-6874-3p 1 0 0
chr17:48058701|48058962 hsa-miR-129-1-3p -13 1 0
chr17:48058701|48058962 hsa-miR-129-2-3p 1 0 0
chr17:48058701|48058962 hsa-miR-3121-5p -8 1 0
chr17:48058701|48058962 hsa-miR-301a-5p -6 1 0
chr17:48058701|48058962 hsa-miR-301b-5p -9 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:48058701|48058962
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MPSELLREEGLWLESKERPESESNSSSSWEACTGLK
Nucleotide Sequence CTGCCTTCAGAGCTGCTTAGGGAAGAAGGGCTATGGCTCGAGTCTAAGGAAAGGCCTGAGTCAGAGTCAAATTCCTCCTCCAGCTGGGAGGCCTGCACAGGGTTAAAG
CircID chr17:48058701|48058962
ORF Type ORF2
Protein Length 55
Nucleotide Length 168
Protein Sequence MVAHSTLGLFQIQGLRVRAVANRTFLRKGGRGRGRSRGRRGRGGGRRGRTAFRAA
Nucleotide Sequence CTGGTAGCCCACAGCACCCTCGGCCTCTTCCAGATCCAGGGTCTCAGAGTCAGAGCTGTAGCCAACCGCACCTTCCTCAGAAAAGGAGGAAGAGGCAGAGGAAGAAGCAGAGGAAGAAGAGGAAGAGGAGGAGGAAGAAGAGGAAGAACTGCCTTCAGAGCTGCTTAG
CircID chr17:48058701|48058962
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MKAVLPLLPPPLPLLPLLLPLPLPPFLRKVRLATALTLRPWIWKRPRVLWATSL
Nucleotide Sequence CTGAAGGCAGTTCTTCCTCTTCTTCCTCCTCCTCTTCCTCTTCTTCCTCTGCTTCTTCCTCTGCCTCTTCCTCCTTTTCTGAGGAAGGTGCGGTTGGCTACAGCTCTGACTCTGAGACCCTGGATCTGGAAGAGGCCGAGGGTGCTGTGGGCTACCAGCCTG
CircID chr17:48058701|48058962
ORF Type ORF4
Protein Length 78
Nucleotide Length 234
Protein Sequence MEEEFDSDSGLSLDSSHSPSSLSSSEGSSSSSSSSSSSSSSASSSASSSFSEEGAVGYSSDSETLDLEEAEGAVGYQP
Nucleotide Sequence CTGGAGGAGGAATTTGACTCTGACTCAGGCCTTTCCTTAGACTCGAGCCATAGCCCTTCTTCCCTAAGCAGCTCTGAAGGCAGTTCTTCCTCTTCTTCCTCCTCCTCTTCCTCTTCTTCCTCTGCTTCTTCCTCTGCCTCTTCCTCCTTTTCTGAGGAAGGTGCGGTTGGCTACAGCTCTGACTCTGAGACCCTGGATCTGGAAGAGGCCGAGGGTGCTGTGGGCTACCAGCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab