CircRNA Information

General Information
circRNA Basic Information
CircID chr17:48141531|48141747
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CACACCTCGCTGATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGTCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCTGCCTCGGTCTCCCAAAGTACTGGGAATACAGGCATGAGCCACTGTGCCTGGCCACCCCTTAACTTCTTAACAAAGTAGACAAGGCCCTGCATGACCCAGTCCCACTCACTGTTCAGCATTGTTA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:48141531|48141747 hsa-miR-193b-5p 0 0 1
chr17:48141531|48141747 hsa-miR-193b-3p 0 0 1
chr17:48141531|48141747 hsa-miR-608 1 1 1
chr17:48141531|48141747 hsa-miR-630 0 0 1
chr17:48141531|48141747 hsa-miR-934 0 0 1
chr17:48141531|48141747 hsa-miR-940 0 0 1
chr17:48141531|48141747 hsa-miR-1827 0 1 1
chr17:48141531|48141747 hsa-miR-770-5p 0 0 1
chr17:48141531|48141747 hsa-miR-193a-3p 0 1 1
chr17:48141531|48141747 hsa-miR-548c-3p 0 0 1
chr17:48141531|48141747 hsa-miR-128 0 0 1
chr17:48141531|48141747 hsa-miR-24 0 0 1
chr17:48141531|48141747 hsa-miR-762 1 0 0
chr17:48141531|48141747 hsa-miR-1182 1 0 0
chr17:48141531|48141747 hsa-miR-663b 1 0 0
chr17:48141531|48141747 hsa-miR-2861 1 0 0
chr17:48141531|48141747 hsa-miR-544b 0 1 0
chr17:48141531|48141747 hsa-miR-3138 1 0 0
chr17:48141531|48141747 hsa-miR-4269 0 1 0
chr17:48141531|48141747 hsa-miR-3936 0 1 0
chr17:48141531|48141747 hsa-miR-4463 1 0 0
chr17:48141531|48141747 hsa-miR-4481 1 1 0
chr17:48141531|48141747 hsa-miR-4489 1 0 0
chr17:48141531|48141747 hsa-miR-4498 1 0 0
chr17:48141531|48141747 hsa-miR-4507 1 0 0
chr17:48141531|48141747 hsa-miR-4508 1 0 0
chr17:48141531|48141747 hsa-miR-4517 0 1 0
chr17:48141531|48141747 hsa-miR-4648 0 1 0
chr17:48141531|48141747 hsa-miR-4651 1 0 0
chr17:48141531|48141747 hsa-miR-4656 1 0 0
chr17:48141531|48141747 hsa-miR-4663 1 0 0
chr17:48141531|48141747 hsa-miR-4673 1 0 0
chr17:48141531|48141747 hsa-miR-4688 1 0 0
chr17:48141531|48141747 hsa-miR-4736 0 1 0
chr17:48141531|48141747 hsa-miR-5693 0 1 0
chr17:48141531|48141747 hsa-miR-5787 1 0 0
chr17:48141531|48141747 hsa-miR-6085 1 0 0
chr17:48141531|48141747 hsa-miR-6132 1 0 0
chr17:48141531|48141747 hsa-miR-8089 1 0 0
chr17:48141531|48141747 hsa-miR-12115 1 0 0
chr17:48141531|48141747 hsa-miR-4433a-3p 0 1 0
chr17:48141531|48141747 hsa-miR-93-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6861-5p 1 0 0
chr17:48141531|48141747 hsa-miR-1972 0 1 0
chr17:48141531|48141747 hsa-miR-3622a-5p 0 1 0
chr17:48141531|48141747 hsa-miR-6089 1 1 0
chr17:48141531|48141747 hsa-miR-4653-3p 0 1 0
chr17:48141531|48141747 hsa-miR-3677-5p 1 0 0
chr17:48141531|48141747 hsa-miR-7160-5p 1 0 0
chr17:48141531|48141747 hsa-miR-4474-3p 1 0 0
chr17:48141531|48141747 hsa-miR-6806-5p 1 0 0
chr17:48141531|48141747 hsa-miR-4655-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6716-5p 1 0 0
chr17:48141531|48141747 hsa-miR-3151-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6748-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6732-5p 1 1 0
chr17:48141531|48141747 hsa-miR-6805-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6782-5p 1 1 0
chr17:48141531|48141747 hsa-miR-6850-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6514-3p 0 1 0
chr17:48141531|48141747 hsa-miR-6771-5p 1 0 0
chr17:48141531|48141747 hsa-miR-4787-5p 1 0 0
chr17:48141531|48141747 hsa-miR-149-3p 1 0 0
chr17:48141531|48141747 hsa-miR-4742-3p 0 1 0
chr17:48141531|48141747 hsa-miR-216a-3p 0 1 0
chr17:48141531|48141747 hsa-miR-6847-3p 0 1 0
chr17:48141531|48141747 hsa-miR-155-5p 0 1 0
chr17:48141531|48141747 hsa-miR-1233-5p 1 1 0
chr17:48141531|48141747 hsa-miR-1273h-5p 1 1 0
chr17:48141531|48141747 hsa-miR-4763-3p 1 0 0
chr17:48141531|48141747 hsa-miR-6778-5p 1 1 0
chr17:48141531|48141747 hsa-miR-6816-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6775-5p 1 0 0
chr17:48141531|48141747 hsa-miR-5001-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6737-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6752-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6756-5p 1 1 0
chr17:48141531|48141747 hsa-miR-6803-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6813-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6819-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6842-5p 1 0 0
chr17:48141531|48141747 hsa-miR-10401-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6722-3p 1 0 0
chr17:48141531|48141747 hsa-miR-6751-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6779-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6808-5p 0 1 0
chr17:48141531|48141747 hsa-miR-7111-5p 1 0 0
chr17:48141531|48141747 hsa-miR-3620-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6836-5p 1 1 0
chr17:48141531|48141747 hsa-miR-10396a-5p 1 0 0
chr17:48141531|48141747 hsa-miR-10396b-5p 1 0 0
chr17:48141531|48141747 hsa-miR-328-5p 1 0 0
chr17:48141531|48141747 hsa-miR-4685-5p 1 0 0
chr17:48141531|48141747 hsa-miR-4745-5p 1 1 0
chr17:48141531|48141747 hsa-miR-4749-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6738-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6794-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6846-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6848-5p 1 0 0
chr17:48141531|48141747 hsa-miR-1238-5p 0 1 0
chr17:48141531|48141747 hsa-miR-4758-5p 1 1 0
chr17:48141531|48141747 hsa-miR-6718-5p 1 0 0
chr17:48141531|48141747 hsa-miR-6715b-5p 0 1 0
chr17:48141531|48141747 hsa-miR-3622b-3p 0 1 0
chr17:48141531|48141747 hsa-miR-6771-3p 0 1 0
chr17:48141531|48141747 hsa-miR-3681-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:48141531|48141747
ORF Type ORF1
Protein Length 53
Nucleotide Length 162
Protein Sequence MIFVFLVEMGFHHIGQSGLELLTSGDLPASVSQSTGNTGMSHCAWPPLNFLTK
Nucleotide Sequence CTGATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGTCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCTGCCTCGGTCTCCCAAAGTACTGGGAATACAGGCATGAGCCACTGTGCCTGGCCACCCCTTAACTTCTTAACAAAGTAG
CircID chr17:48141531|48141747
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MYSQYFGRPRQADHLRSGVQDQTGQYGETPSLLKIQKSARC
Nucleotide Sequence CTGTATTCCCAGTACTTTGGGAGACCGAGGCAGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGACTGGCCAATATGGTGAAACCCCATCTCTACTAAAAATACAAAAATCAGCGAGGTGT
CircID chr17:48141531|48141747
ORF Type ORF3
Protein Length 56
Nucleotide Length 171
Protein Sequence MLNSEWDWVMQGLVYFVKKLRGGQAQWLMPVFPVLWETEAGRSPEVRSSRPDWPIW
Nucleotide Sequence ATGCTGAACAGTGAGTGGGACTGGGTCATGCAGGGCCTTGTCTACTTTGTTAAGAAGTTAAGGGGTGGCCAGGCACAGTGGCTCATGCCTGTATTCCCAGTACTTTGGGAGACCGAGGCAGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGACTGGCCAATATGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab