CircRNA Information

General Information
circRNA Basic Information
CircID chr17:4890670|4891045
Strand -
CircType exon
Host Gene ENSG00000141503.14;
Algorism CIRI2;
Sequence AGGAAGCCCCTGTACCATTATGGTCGGGGCATGAATCCCGCTGACAAACCAGCCTGGGCCCGAGAGGTACTCACTGCCTCCTTTGCCTCCTGAGACTGCAGTCCCACTGCCTGAGGCCTGGAGAGCCACAAGAAGTAGTAGTTCACAGTAGCAGGCACCAAGTAGGGGAAAGGAGCACACAGCACAGAGCATAGGGCGGGAGTAGTTAGGGCAGGTGGGACCCTCAGTTTTGAGAACAGGGAGGCAAGAGCTGGCCTGCTTGACATCCCTTCACATCACAGGTAGAAGAGAGAACAAGGATGAACAAGCAGCAGAACTCTCCCTTGGCCAAGAGCAAGCCAGGCAGCACGGGGCCTGAGCCCCCCATCCCCCAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:4890670|4891045 hsa-miR-34a-5p 0 0 1
chr17:4890670|4891045 hsa-miR-34a-3p 0 0 1
chr17:4890670|4891045 hsa-miR-449a 0 0 1
chr17:4890670|4891045 hsa-miR-578 0 1 1
chr17:4890670|4891045 hsa-miR-581 0 0 1
chr17:4890670|4891045 hsa-miR-588 0 0 1
chr17:4890670|4891045 hsa-miR-606 0 0 1
chr17:4890670|4891045 hsa-miR-625-5p 0 0 1
chr17:4890670|4891045 hsa-miR-625-3p 0 0 1
chr17:4890670|4891045 hsa-miR-637 1 1 1
chr17:4890670|4891045 hsa-miR-650 0 1 1
chr17:4890670|4891045 hsa-miR-661 1 0 1
chr17:4890670|4891045 hsa-miR-449b-5p 0 0 1
chr17:4890670|4891045 hsa-miR-449b-3p 0 0 1
chr17:4890670|4891045 hsa-miR-1323 0 1 1
chr17:4890670|4891045 hsa-miR-766-5p 0 0 1
chr17:4890670|4891045 hsa-miR-766-3p 0 0 1
chr17:4890670|4891045 hsa-miR-892a 0 0 1
chr17:4890670|4891045 hsa-miR-890 0 0 1
chr17:4890670|4891045 hsa-miR-760 0 0 1
chr17:4890670|4891045 hsa-miR-1236-5p 0 0 1
chr17:4890670|4891045 hsa-miR-1236-3p 0 0 1
chr17:4890670|4891045 hsa-miR-1206 0 0 1
chr17:4890670|4891045 hsa-miR-548e-5p 0 0 1
chr17:4890670|4891045 hsa-miR-548e-3p 0 0 1
chr17:4890670|4891045 hsa-miR-548o-3p 0 0 1
chr17:4890670|4891045 hsa-miR-1266-5p 0 0 1
chr17:4890670|4891045 hsa-miR-1266-3p 0 0 1
chr17:4890670|4891045 hsa-miR-1275 0 0 1
chr17:4890670|4891045 hsa-miR-1288-5p 0 0 1
chr17:4890670|4891045 hsa-miR-1288-3p 0 0 1
chr17:4890670|4891045 hsa-miR-513c-5p 0 0 1
chr17:4890670|4891045 hsa-miR-513c-3p 0 0 1
chr17:4890670|4891045 hsa-miR-1827 0 0 1
chr17:4890670|4891045 hsa-miR-548o 0 0 1
chr17:4890670|4891045 hsa-miR-339-5p 0 0 1
chr17:4890670|4891045 hsa-miR-1224-3p 1 1 1
chr17:4890670|4891045 hsa-miR-362-5p 0 0 1
chr17:4890670|4891045 hsa-miR-34c-5p 0 1 1
chr17:4890670|4891045 hsa-miR-509-3-5p 0 0 1
chr17:4890670|4891045 hsa-miR-509-5p 0 1 1
chr17:4890670|4891045 hsa-miR-548a-3p 0 0 1
chr17:4890670|4891045 hsa-miR-516a-3p 0 0 1
chr17:4890670|4891045 hsa-miR-371-5p 0 0 1
chr17:4890670|4891045 hsa-miR-1260 0 0 1
chr17:4890670|4891045 hsa-miR-1274a 0 0 1
chr17:4890670|4891045 hsa-miR-1280 0 0 1
chr17:4890670|4891045 hsa-miR-550 0 0 1
chr17:4890670|4891045 hsa-miR-1274b 0 0 1
chr17:4890670|4891045 hsa-miR-548f 0 0 1
chr17:4890670|4891045 hsa-miR-1254 0 0 1
chr17:4890670|4891045 hsa-miR-24 0 0 1
chr17:4890670|4891045 hsa-miR-923 0 0 1
chr17:4890670|4891045 hsa-miR-596 1 0 0
chr17:4890670|4891045 hsa-miR-608 1 0 0
chr17:4890670|4891045 hsa-miR-636 1 0 0
chr17:4890670|4891045 hsa-miR-638 1 0 0
chr17:4890670|4891045 hsa-miR-762 1 0 0
chr17:4890670|4891045 hsa-miR-2113 1 0 0
chr17:4890670|4891045 hsa-miR-665 1 0 0
chr17:4890670|4891045 hsa-miR-1538 1 1 0
chr17:4890670|4891045 hsa-miR-1913 1 0 0
chr17:4890670|4891045 hsa-miR-1976 1 0 0
chr17:4890670|4891045 hsa-miR-3135a 1 1 0
chr17:4890670|4891045 hsa-miR-3155a 1 0 0
chr17:4890670|4891045 hsa-miR-3181 1 1 0
chr17:4890670|4891045 hsa-miR-3197 1 0 0
chr17:4890670|4891045 hsa-miR-4298 1 0 0
chr17:4890670|4891045 hsa-miR-3612 0 1 0
chr17:4890670|4891045 hsa-miR-3615 0 1 0
chr17:4890670|4891045 hsa-miR-3909 1 0 0
chr17:4890670|4891045 hsa-miR-4418 0 1 0
chr17:4890670|4891045 hsa-miR-4430 1 0 0
chr17:4890670|4891045 hsa-miR-4437 0 1 0
chr17:4890670|4891045 hsa-miR-3155b 1 0 0
chr17:4890670|4891045 hsa-miR-4488 1 0 0
chr17:4890670|4891045 hsa-miR-4512 1 0 0
chr17:4890670|4891045 hsa-miR-4648 1 1 0
chr17:4890670|4891045 hsa-miR-4656 1 0 0
chr17:4890670|4891045 hsa-miR-4692 0 1 0
chr17:4890670|4891045 hsa-miR-4739 1 0 0
chr17:4890670|4891045 hsa-miR-5691 0 1 0
chr17:4890670|4891045 hsa-miR-5698 0 1 0
chr17:4890670|4891045 hsa-miR-5787 1 0 0
chr17:4890670|4891045 hsa-miR-6075 1 0 0
chr17:4890670|4891045 hsa-miR-6125 1 0 0
chr17:4890670|4891045 hsa-miR-7974 1 0 0
chr17:4890670|4891045 hsa-miR-8052 1 1 0
chr17:4890670|4891045 hsa-miR-8089 1 0 0
chr17:4890670|4891045 hsa-miR-12115 1 0 0
chr17:4890670|4891045 hsa-miR-12118 0 1 0
chr17:4890670|4891045 hsa-miR-29b-1-5p 0 1 0
chr17:4890670|4891045 hsa-miR-26b-3p 0 1 0
chr17:4890670|4891045 hsa-miR-4747-3p 1 0 0
chr17:4890670|4891045 hsa-miR-18a-3p 1 1 0
chr17:4890670|4891045 hsa-miR-6840-3p 1 0 0
chr17:4890670|4891045 hsa-miR-6765-5p 1 0 0
chr17:4890670|4891045 hsa-miR-6836-3p 1 0 0
chr17:4890670|4891045 hsa-miR-6894-5p 1 0 0
chr17:4890670|4891045 hsa-miR-6857-5p 0 1 0
chr17:4890670|4891045 hsa-miR-1227-5p 1 0 0
chr17:4890670|4891045 hsa-miR-6757-5p 1 1 0
chr17:4890670|4891045 hsa-miR-4695-5p 1 1 0
chr17:4890670|4891045 hsa-miR-4722-5p 1 0 0
chr17:4890670|4891045 hsa-miR-6842-3p 1 0 0
chr17:4890670|4891045 hsa-miR-3187-3p 1 0 0
chr17:4890670|4891045 hsa-miR-3189-5p 1 0 0
chr17:4890670|4891045 hsa-miR-5589-5p 1 0 0
chr17:4890670|4891045 hsa-miR-7110-3p 1 0 0
chr17:4890670|4891045 hsa-miR-1915-5p 1 0 0
chr17:4890670|4891045 hsa-miR-4697-3p 0 1 0
chr17:4890670|4891045 hsa-miR-6732-5p 1 0 0
chr17:4890670|4891045 hsa-miR-6798-5p 1 0 0
chr17:4890670|4891045 hsa-miR-2467-3p 1 0 0
chr17:4890670|4891045 hsa-miR-6782-5p 1 0 0
chr17:4890670|4891045 hsa-miR-6765-3p 1 0 0
chr17:4890670|4891045 hsa-miR-6728-3p 1 0 0
chr17:4890670|4891045 hsa-miR-6735-3p 1 0 0
chr17:4890670|4891045 hsa-miR-6882-3p 0 1 0
chr17:4890670|4891045 hsa-miR-3934-3p 1 1 0
chr17:4890670|4891045 hsa-miR-6772-3p 1 0 0
chr17:4890670|4891045 hsa-miR-7109-5p 0 1 0
chr17:4890670|4891045 hsa-miR-4763-5p 1 0 0
chr17:4890670|4891045 hsa-miR-7108-3p 1 0 0
chr17:4890670|4891045 hsa-miR-1247-5p 1 0 0
chr17:4890670|4891045 hsa-miR-3944-3p 1 0 0
chr17:4890670|4891045 hsa-miR-4640-5p 1 0 0
chr17:4890670|4891045 hsa-miR-7113-3p 1 0 0
chr17:4890670|4891045 hsa-miR-6771-5p 1 0 0
chr17:4890670|4891045 hsa-miR-4690-5p 0 1 0
chr17:4890670|4891045 hsa-miR-6749-5p 1 1 0
chr17:4890670|4891045 hsa-miR-7111-3p 1 0 0
chr17:4890670|4891045 hsa-miR-6739-3p 0 1 0
chr17:4890670|4891045 hsa-miR-149-3p 1 0 0
chr17:4890670|4891045 hsa-miR-194-3p 0 1 0
chr17:4890670|4891045 hsa-miR-4740-5p 1 0 0
chr17:4890670|4891045 hsa-miR-5010-5p 0 1 0
chr17:4890670|4891045 hsa-miR-6864-5p 0 1 0
chr17:4890670|4891045 hsa-miR-664b-5p 1 0 0
chr17:4890670|4891045 hsa-miR-4776-3p 1 0 0
chr17:4890670|4891045 hsa-miR-6743-3p 1 0 0
chr17:4890670|4891045 hsa-miR-1250-5p 1 0 0
chr17:4890670|4891045 hsa-miR-6811-3p 1 0 0
chr17:4890670|4891045 hsa-miR-6889-3p 1 0 0
chr17:4890670|4891045 hsa-miR-7106-3p 1 0 0
chr17:4890670|4891045 hsa-miR-4758-3p 1 0 0
chr17:4890670|4891045 hsa-miR-208a-5p 1 0 0
chr17:4890670|4891045 hsa-miR-6778-3p 1 1 0
chr17:4890670|4891045 hsa-miR-6752-3p 1 1 0
chr17:4890670|4891045 hsa-miR-6814-5p 1 1 0
chr17:4890670|4891045 hsa-miR-3605-3p 1 1 0
chr17:4890670|4891045 hsa-miR-4632-3p 1 0 0
chr17:4890670|4891045 hsa-miR-214-3p 1 0 0
chr17:4890670|4891045 hsa-miR-671-3p 1 0 0
chr17:4890670|4891045 hsa-miR-4649-3p 1 0 0
chr17:4890670|4891045 hsa-miR-4283 0 1 0
chr17:4890670|4891045 hsa-miR-3664-3p 0 1 0
chr17:4890670|4891045 hsa-miR-4433a-5p 1 1 0
chr17:4890670|4891045 hsa-miR-1229-3p 1 0 0
chr17:4890670|4891045 hsa-miR-4433b-5p 1 0 0
chr17:4890670|4891045 hsa-miR-19b-1-5p 0 1 0
chr17:4890670|4891045 hsa-miR-1228-3p 1 0 0
chr17:4890670|4891045 hsa-miR-18b-3p 1 1 0
chr17:4890670|4891045 hsa-miR-3152-5p 0 1 0
chr17:4890670|4891045 hsa-miR-4423-5p 0 1 0
chr17:4890670|4891045 hsa-miR-4650-5p 0 1 0
chr17:4890670|4891045 hsa-miR-4693-5p 0 1 0
chr17:4890670|4891045 hsa-miR-1233-5p 1 0 0
chr17:4890670|4891045 hsa-miR-6778-5p 1 0 0
chr17:4890670|4891045 hsa-miR-6816-5p 1 0 0
chr17:4890670|4891045 hsa-miR-6865-5p 1 0 0
chr17:4890670|4891045 hsa-miR-5001-5p 1 0 0
chr17:4890670|4891045 hsa-miR-6803-5p 1 1 0
chr17:4890670|4891045 hsa-miR-6813-5p 1 1 0
chr17:4890670|4891045 hsa-miR-6751-5p 1 0 0
chr17:4890670|4891045 hsa-miR-6774-5p 1 0 0
chr17:4890670|4891045 hsa-miR-6797-5p 1 0 0
chr17:4890670|4891045 hsa-miR-3127-3p 1 0 0
chr17:4890670|4891045 hsa-miR-4685-3p 1 0 0
chr17:4890670|4891045 hsa-miR-328-5p 1 0 0
chr17:4890670|4891045 hsa-miR-449c-5p 0 1 0
chr17:4890670|4891045 hsa-miR-4649-5p 1 0 0
chr17:4890670|4891045 hsa-miR-4685-5p 1 0 0
chr17:4890670|4891045 hsa-miR-6848-5p 1 0 0
chr17:4890670|4891045 hsa-miR-939-5p 1 0 0
chr17:4890670|4891045 hsa-miR-3199 1 1 0
chr17:4890670|4891045 hsa-miR-34b-5p 0 1 0
chr17:4890670|4891045 hsa-miR-10396a-3p 1 0 0
chr17:4890670|4891045 hsa-miR-10396b-3p 1 0 0
chr17:4890670|4891045 hsa-miR-1271-3p 1 1 0
chr17:4890670|4891045 hsa-miR-5008-3p 1 0 0
chr17:4890670|4891045 hsa-miR-4665-5p 0 1 0
chr17:4890670|4891045 hsa-miR-6791-3p 1 1 0
chr17:4890670|4891045 hsa-miR-6891-5p 0 1 0
chr17:4890670|4891045 hsa-miR-6724-5p 1 0 0
chr17:4890670|4891045 hsa-miR-6805-3p 1 0 0
chr17:4890670|4891045 hsa-miR-6775-3p 1 0 0
chr17:4890670|4891045 hsa-miR-6769b-3p 1 0 0
chr17:4890670|4891045 hsa-miR-6744-3p 1 0 0
chr17:4890670|4891045 hsa-miR-6876-3p 1 0 0
chr17:4890670|4891045 hsa-miR-2682-5p 0 1 0
chr17:4890670|4891045 hsa-miR-6737-3p 1 0 0
chr17:4890670|4891045 hsa-miR-7156-5p 0 1 0
chr17:4890670|4891045 hsa-miR-6874-3p 0 1 0
chr17:4890670|4891045 hsa-miR-373-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:4890670|4891045
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MYHYGRGMNPADKPAWAREVLTASFAS
Nucleotide Sequence CTGTACCATTATGGTCGGGGCATGAATCCCGCTGACAAACCAGCCTGGGCCCGAGAGGTACTCACTGCCTCCTTTGCCTCCTGA
CircID chr17:4890670|4891045
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MTNQPGPERYSLPPLPPETAVPLPEAWRATRSSSSQ
Nucleotide Sequence CTGACAAACCAGCCTGGGCCCGAGAGGTACTCACTGCCTCCTTTGCCTCCTGAGACTGCAGTCCCACTGCCTGAGGCCTGGAGAGCCACAAGAAGTAGTAGTTCACAGTAG
CircID chr17:4890670|4891045
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MRTGRQELACLTSLHITGRRENKDEQAAELSLGQEQARQHGA
Nucleotide Sequence TTGAGAACAGGGAGGCAAGAGCTGGCCTGCTTGACATCCCTTCACATCACAGGTAGAAGAGAGAACAAGGATGAACAAGCAGCAGAACTCTCCCTTGGCCAAGAGCAAGCCAGGCAGCACGGGGCCTGA
CircID chr17:4890670|4891045
ORF Type ORF4
Protein Length 46
Nucleotide Length 141
Protein Sequence MGPRGTHCLLCLLRLQSHCLRPGEPQEVVVHSSRHQVGERSTQHRA
Nucleotide Sequence CTGGGCCCGAGAGGTACTCACTGCCTCCTTTGCCTCCTGAGACTGCAGTCCCACTGCCTGAGGCCTGGAGAGCCACAAGAAGTAGTAGTTCACAGTAGCAGGCACCAAGTAGGGGAAAGGAGCACACAGCACAGAGCATAG
CircID chr17:4890670|4891045
ORF Type ORF5
Protein Length 25
Nucleotide Length 75
Protein Sequence MNKQQNSPLAKSKPGSTGPEPPIPQ
Nucleotide Sequence ATGAACAAGCAGCAGAACTCTCCCTTGGCCAAGAGCAAGCCAGGCAGCACGGGGCCTGAGCCCCCCATCCCCCAG
CircID chr17:4890670|4891045
ORF Type ORF6
Protein Length 47
Nucleotide Length 144
Protein Sequence MGGSGPVLPGLLLAKGEFCCLFILVLSSTCDVKGCQAGQLLPPCSQN
Nucleotide Sequence ATGGGGGGCTCAGGCCCCGTGCTGCCTGGCTTGCTCTTGGCCAAGGGAGAGTTCTGCTGCTTGTTCATCCTTGTTCTCTCTTCTACCTGTGATGTGAAGGGATGTCAAGCAGGCCAGCTCTTGCCTCCCTGTTCTCAAAACTGA
CircID chr17:4890670|4891045
ORF Type ORF7
Protein Length 64
Nucleotide Length 192
Protein Sequence MLCAVCSFPLLGACYCELLLLVALQASGSGTAVSGGKGGSEYLSGPGWFVSGIHAPTIMVQGLP
Nucleotide Sequence ATGCTCTGTGCTGTGTGCTCCTTTCCCCTACTTGGTGCCTGCTACTGTGAACTACTACTTCTTGTGGCTCTCCAGGCCTCAGGCAGTGGGACTGCAGTCTCAGGAGGCAAAGGAGGCAGTGAGTACCTCTCGGGCCCAGGCTGGTTTGTCAGCGGGATTCATGCCCCGACCATAATGGTACAGGGGCTTCCT
CircID chr17:4890670|4891045
ORF Type ORF8
Protein Length 32
Nucleotide Length 99
Protein Sequence LGDGGLRPRAAWLALGQGRVLLLVHPCSLFYL
Nucleotide Sequence CTGGGGGATGGGGGGCTCAGGCCCCGTGCTGCCTGGCTTGCTCTTGGCCAAGGGAGAGTTCTGCTGCTTGTTCATCCTTGTTCTCTCTTCTACCTGTGA
CircID chr17:4890670|4891045
ORF Type ORF9
Protein Length 82
Nucleotide Length 249
Protein Sequence MSSRPALASLFSKLRVPPALTTPALCSVLCAPFPYLVPATVNYYFLWLSRPQAVGLQSQEAKEAVSTSRAQAGLSAGFMPRP
Nucleotide Sequence ATGTCAAGCAGGCCAGCTCTTGCCTCCCTGTTCTCAAAACTGAGGGTCCCACCTGCCCTAACTACTCCCGCCCTATGCTCTGTGCTGTGTGCTCCTTTCCCCTACTTGGTGCCTGCTACTGTGAACTACTACTTCTTGTGGCTCTCCAGGCCTCAGGCAGTGGGACTGCAGTCTCAGGAGGCAAAGGAGGCAGTGAGTACCTCTCGGGCCCAGGCTGGTTTGTCAGCGGGATTCATGCCCCGACCATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab