CircRNA Information

General Information
circRNA Basic Information
CircID chr17:4892411|4892768
Strand +
CircType exon
Host Gene ENSG00000141503.14;
Algorism CIRI2;
Sequence CTCCCACGCGGTTCCGCTCCAGTGAGCCAGCCTGGGGGAGGTGCCCGTGAGAGGCTGGAAGGACGCTGTCCGAGCGTTCCCAGCCAGGGTCGCTCCTCCTGAGGTCGGGGTTACTGTTGGGGGGGCAGAGTCAGGGTCAGGGAGGCACGGTGCTCCCTTCTCTGGGGTGCTGAGCTGCACTGCAGAGGGAGCCATCACCAGGGAAGCGGGTGGCAGAAGTGAGAGGTGAGAGTGAGTTGGGGGACAACTCTATTACCTAGAGGCGTTGGGCGGGCCAGGGGGCTGAGCAGGGGGCCCTGGAGGCTTTGGGGTGCCCCGCTCTGCCCGCCTTTGCAGATAGATTTGCCAGGCGGAGTTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:4892411|4892768 hsa-miR-148a-5p 0 0 1
chr17:4892411|4892768 hsa-miR-148a-3p 0 0 1
chr17:4892411|4892768 hsa-miR-152-5p 0 0 1
chr17:4892411|4892768 hsa-miR-152-3p 0 0 1
chr17:4892411|4892768 hsa-miR-149-5p 0 0 1
chr17:4892411|4892768 hsa-miR-149-3p 0 0 1
chr17:4892411|4892768 hsa-miR-148b-5p 0 0 1
chr17:4892411|4892768 hsa-miR-148b-3p 0 0 1
chr17:4892411|4892768 hsa-miR-345-5p 0 0 1
chr17:4892411|4892768 hsa-miR-345-3p 0 0 1
chr17:4892411|4892768 hsa-miR-527 0 0 1
chr17:4892411|4892768 hsa-miR-504-5p 0 0 1
chr17:4892411|4892768 hsa-miR-504-3p 0 0 1
chr17:4892411|4892768 hsa-miR-614 0 0 1
chr17:4892411|4892768 hsa-miR-1301-5p 0 0 1
chr17:4892411|4892768 hsa-miR-1301-3p 0 0 1
chr17:4892411|4892768 hsa-miR-765 0 0 1
chr17:4892411|4892768 hsa-miR-744-5p 0 0 1
chr17:4892411|4892768 hsa-miR-744-3p 0 0 1
chr17:4892411|4892768 hsa-miR-1229-5p 0 0 1
chr17:4892411|4892768 hsa-miR-1229-3p 0 0 1
chr17:4892411|4892768 hsa-miR-1205 0 0 1
chr17:4892411|4892768 hsa-miR-1292-5p 0 0 1
chr17:4892411|4892768 hsa-miR-1292-3p 0 0 1
chr17:4892411|4892768 hsa-miR-296-5p 0 1 1
chr17:4892411|4892768 hsa-miR-1184 0 0 1
chr17:4892411|4892768 hsa-miR-361-3p 1 1 1
chr17:4892411|4892768 hsa-miR-331-3p 0 1 1
chr17:4892411|4892768 hsa-miR-767-3p 0 1 1
chr17:4892411|4892768 hsa-miR-324-3p 0 0 1
chr17:4892411|4892768 hsa-miR-125a-5p 0 0 1
chr17:4892411|4892768 hsa-miR-518a-5p 0 0 1
chr17:4892411|4892768 hsa-miR-1274a 0 0 1
chr17:4892411|4892768 hsa-miR-125b 0 0 1
chr17:4892411|4892768 hsa-miR-642 0 0 1
chr17:4892411|4892768 hsa-miR-24 0 0 1
chr17:4892411|4892768 hsa-miR-572 1 0 0
chr17:4892411|4892768 hsa-miR-596 1 0 0
chr17:4892411|4892768 hsa-miR-663a 0 1 0
chr17:4892411|4892768 hsa-miR-663b 1 0 0
chr17:4892411|4892768 hsa-miR-1291 1 0 0
chr17:4892411|4892768 hsa-miR-1913 1 1 0
chr17:4892411|4892768 hsa-miR-718 1 0 0
chr17:4892411|4892768 hsa-miR-4313 1 1 0
chr17:4892411|4892768 hsa-miR-3943 1 1 0
chr17:4892411|4892768 hsa-miR-4469 0 1 0
chr17:4892411|4892768 hsa-miR-4484 0 1 0
chr17:4892411|4892768 hsa-miR-4522 0 1 0
chr17:4892411|4892768 hsa-miR-5787 0 1 0
chr17:4892411|4892768 hsa-miR-7515 0 1 0
chr17:4892411|4892768 hsa-miR-9899 1 0 0
chr17:4892411|4892768 hsa-miR-12125 0 1 0
chr17:4892411|4892768 hsa-miR-143-5p 0 1 0
chr17:4892411|4892768 hsa-miR-17-3p 0 1 0
chr17:4892411|4892768 hsa-miR-6749-3p 1 0 0
chr17:4892411|4892768 hsa-miR-6879-3p 1 1 0
chr17:4892411|4892768 hsa-miR-4665-3p 1 0 0
chr17:4892411|4892768 hsa-miR-6836-3p 1 1 0
chr17:4892411|4892768 hsa-miR-6720-5p 1 1 0
chr17:4892411|4892768 hsa-miR-3663-3p 0 1 0
chr17:4892411|4892768 hsa-miR-3189-5p 1 0 0
chr17:4892411|4892768 hsa-miR-6849-3p 0 1 0
chr17:4892411|4892768 hsa-miR-4728-3p 1 0 0
chr17:4892411|4892768 hsa-miR-1915-5p 1 0 0
chr17:4892411|4892768 hsa-miR-4725-5p 1 1 0
chr17:4892411|4892768 hsa-miR-6770-5p 0 1 0
chr17:4892411|4892768 hsa-miR-6514-5p 0 1 0
chr17:4892411|4892768 hsa-miR-4713-5p 1 0 0
chr17:4892411|4892768 hsa-miR-4436b-5p 1 0 0
chr17:4892411|4892768 hsa-miR-7109-3p 0 1 0
chr17:4892411|4892768 hsa-miR-939-3p 1 0 0
chr17:4892411|4892768 hsa-miR-6772-3p 1 0 0
chr17:4892411|4892768 hsa-miR-4763-5p 1 1 0
chr17:4892411|4892768 hsa-miR-6763-3p 1 0 0
chr17:4892411|4892768 hsa-miR-7108-3p 0 1 0
chr17:4892411|4892768 hsa-miR-4707-3p 1 1 0
chr17:4892411|4892768 hsa-miR-2277-3p 0 1 0
chr17:4892411|4892768 hsa-miR-1908-3p 1 0 0
chr17:4892411|4892768 hsa-miR-4715-3p 0 1 0
chr17:4892411|4892768 hsa-miR-5580-5p 0 1 0
chr17:4892411|4892768 hsa-miR-7113-3p 1 1 0
chr17:4892411|4892768 hsa-miR-3679-3p 1 0 0
chr17:4892411|4892768 hsa-miR-1304-3p 0 1 0
chr17:4892411|4892768 hsa-miR-4640-3p 1 0 0
chr17:4892411|4892768 hsa-miR-1306-5p 0 1 0
chr17:4892411|4892768 hsa-miR-7112-5p 0 1 0
chr17:4892411|4892768 hsa-miR-7160-3p 0 1 0
chr17:4892411|4892768 hsa-miR-1237-3p 1 0 0
chr17:4892411|4892768 hsa-miR-7106-3p 1 1 0
chr17:4892411|4892768 hsa-miR-4687-5p 1 0 0
chr17:4892411|4892768 hsa-miR-4732-3p 0 1 0
chr17:4892411|4892768 hsa-miR-3944-5p 0 1 0
chr17:4892411|4892768 hsa-miR-4758-3p 1 0 0
chr17:4892411|4892768 hsa-miR-6793-3p 1 1 0
chr17:4892411|4892768 hsa-miR-6778-3p 1 1 0
chr17:4892411|4892768 hsa-miR-1224-3p 1 0 0
chr17:4892411|4892768 hsa-miR-2276-5p 0 1 0
chr17:4892411|4892768 hsa-miR-6871-3p 0 1 0
chr17:4892411|4892768 hsa-miR-6869-3p 1 0 0
chr17:4892411|4892768 hsa-miR-6872-3p 1 0 0
chr17:4892411|4892768 hsa-miR-653-3p 0 1 0
chr17:4892411|4892768 hsa-miR-6738-3p 0 1 0
chr17:4892411|4892768 hsa-miR-4749-3p 1 0 0
chr17:4892411|4892768 hsa-miR-328-3p 1 1 0
chr17:4892411|4892768 hsa-miR-6794-3p 0 1 0
chr17:4892411|4892768 hsa-miR-1227-3p 1 1 0
chr17:4892411|4892768 hsa-miR-3664-3p 0 1 0
chr17:4892411|4892768 hsa-miR-4750-3p 1 1 0
chr17:4892411|4892768 hsa-miR-4639-3p 0 1 0
chr17:4892411|4892768 hsa-miR-6729-3p 1 0 0
chr17:4892411|4892768 hsa-miR-4727-5p 1 1 0
chr17:4892411|4892768 hsa-miR-7158-5p 1 0 0
chr17:4892411|4892768 hsa-miR-6800-3p 0 1 0
chr17:4892411|4892768 hsa-miR-6732-3p 0 1 0
chr17:4892411|4892768 hsa-miR-6750-3p 0 1 0
chr17:4892411|4892768 hsa-miR-4709-5p 0 1 0
chr17:4892411|4892768 hsa-miR-1343-5p 0 1 0
chr17:4892411|4892768 hsa-miR-5001-5p 1 1 0
chr17:4892411|4892768 hsa-miR-4685-3p 1 0 0
chr17:4892411|4892768 hsa-miR-10396a-5p 0 1 0
chr17:4892411|4892768 hsa-miR-4745-3p 1 0 0
chr17:4892411|4892768 hsa-miR-4745-5p 0 1 0
chr17:4892411|4892768 hsa-miR-6791-3p 1 0 0
chr17:4892411|4892768 hsa-miR-4700-5p 0 1 0
chr17:4892411|4892768 hsa-miR-10398-5p 0 1 0
chr17:4892411|4892768 hsa-miR-6727-3p 1 0 0
chr17:4892411|4892768 hsa-miR-6511a-3p 1 0 0
chr17:4892411|4892768 hsa-miR-6784-3p 0 1 0
chr17:4892411|4892768 hsa-miR-6792-3p 0 1 0
chr17:4892411|4892768 hsa-miR-6862-3p 1 0 0
chr17:4892411|4892768 hsa-miR-6801-3p 0 1 0
chr17:4892411|4892768 hsa-miR-6805-3p 1 0 0
chr17:4892411|4892768 hsa-miR-6810-3p 1 1 0
chr17:4892411|4892768 hsa-miR-6829-3p 1 0 0
chr17:4892411|4892768 hsa-miR-6775-3p 1 1 0
chr17:4892411|4892768 hsa-miR-10392-3p 1 0 0
chr17:4892411|4892768 hsa-miR-4723-3p 1 1 0
chr17:4892411|4892768 hsa-miR-6511b-3p 1 0 0
chr17:4892411|4892768 hsa-miR-6512-3p 0 1 0
chr17:4892411|4892768 hsa-miR-6819-3p 0 1 0
chr17:4892411|4892768 hsa-miR-4769-3p 1 0 0
chr17:4892411|4892768 hsa-miR-3059-3p 0 1 0
chr17:4892411|4892768 hsa-miR-4781-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:4892411|4892768
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MSRGPWRLWGAPLCPPLQIDLPGGV
Nucleotide Sequence CTGAGCAGGGGGCCCTGGAGGCTTTGGGGTGCCCCGCTCTGCCCGCCTTTGCAGATAGATTTGCCAGGCGGAGTT
CircID chr17:4892411|4892768
ORF Type ORF2
Protein Length 65
Nucleotide Length 198
Protein Sequence MGEVPVRGWKDAVRAFPARVAPPEVGVTVGGAESGSGRHGAPFSGVLSCTAEGAITREAGGRSER
Nucleotide Sequence CTGGGGGAGGTGCCCGTGAGAGGCTGGAAGGACGCTGTCCGAGCGTTCCCAGCCAGGGTCGCTCCTCCTGAGGTCGGGGTTACTGTTGGGGGGGCAGAGTCAGGGTCAGGGAGGCACGGTGCTCCCTTCTCTGGGGTGCTGAGCTGCACTGCAGAGGGAGCCATCACCAGGGAAGCGGGTGGCAGAAGTGAGAGGTGA
CircID chr17:4892411|4892768
ORF Type ORF3
Protein Length 35
Nucleotide Length 108
Protein Sequence MSERSQPGSLLLRSGLLLGGQSQGQGGTVLPSLGC
Nucleotide Sequence CTGTCCGAGCGTTCCCAGCCAGGGTCGCTCCTCCTGAGGTCGGGGTTACTGTTGGGGGGGCAGAGTCAGGGTCAGGGAGGCACGGTGCTCCCTTCTCTGGGGTGCTGA
CircID chr17:4892411|4892768
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MQREPSPGKRVAEVRGESELGDNSIT
Nucleotide Sequence CTGCAGAGGGAGCCATCACCAGGGAAGCGGGTGGCAGAAGTGAGAGGTGAGAGTGAGTTGGGGGACAACTCTATTACCTAG
CircID chr17:4892411|4892768
ORF Type ORF5
Protein Length 30
Nucleotide Length 93
Protein Sequence MANLSAKAGRAGHPKASRAPCSAPWPAQRL
Nucleotide Sequence CTGGCAAATCTATCTGCAAAGGCGGGCAGAGCGGGGCACCCCAAAGCCTCCAGGGCCCCCTGCTCAGCCCCCTGGCCCGCCCAACGCCTCTAG
CircID chr17:4892411|4892768
ORF Type ORF6
Protein Length 36
Nucleotide Length 111
Protein Sequence MSPNSLSPLTSATRFPGDGSLCSAAQHPREGSTVPP
Nucleotide Sequence TTGTCCCCCAACTCACTCTCACCTCTCACTTCTGCCACCCGCTTCCCTGGTGATGGCTCCCTCTGCAGTGCAGCTCAGCACCCCAGAGAAGGGAGCACCGTGCCTCCCTGA
CircID chr17:4892411|4892768
ORF Type ORF7
Protein Length 27
Nucleotide Length 84
Protein Sequence MQRRAERGTPKPPGPPAQPPGPPNASR
Nucleotide Sequence CTGCAAAGGCGGGCAGAGCGGGGCACCCCAAAGCCTCCAGGGCCCCCTGCTCAGCCCCCTGGCCCGCCCAACGCCTCTAGGTAA
CircID chr17:4892411|4892768
ORF Type ORF8
Protein Length 72
Nucleotide Length 216
Protein Sequence MPPASLVMAPSAVQLSTPEKGAPCLPDPDSAPPTVTPTSGGATLAGNARTASFQPLTGTSPRLAHWSGTAWE
Nucleotide Sequence CTGCCACCCGCTTCCCTGGTGATGGCTCCCTCTGCAGTGCAGCTCAGCACCCCAGAGAAGGGAGCACCGTGCCTCCCTGACCCTGACTCTGCCCCCCCAACAGTAACCCCGACCTCAGGAGGAGCGACCCTGGCTGGGAACGCTCGGACAGCGTCCTTCCAGCCTCTCACGGGCACCTCCCCCAGGCTGGCTCACTGGAGCGGAACCGCGTGGGAG
CircID chr17:4892411|4892768
ORF Type ORF9
Protein Length 31
Nucleotide Length 96
Protein Sequence MLSPLARPTPLGNRVVPQLTLTSHFCHPLPW
Nucleotide Sequence CTGCTCAGCCCCCTGGCCCGCCCAACGCCTCTAGGTAATAGAGTTGTCCCCCAACTCACTCTCACCTCTCACTTCTGCCACCCGCTTCCCTGGTGA
CircID chr17:4892411|4892768
ORF Type ORF10
Protein Length 27
Nucleotide Length 81
Protein Sequence MGTLGQRPSSLSRAPPPGWLTGAEPRG
Nucleotide Sequence CTGGGAACGCTCGGACAGCGTCCTTCCAGCCTCTCACGGGCACCTCCCCCAGGCTGGCTCACTGGAGCGGAACCGCGTGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab