CircRNA Information

General Information
circRNA Basic Information
CircID chr17:4895775|4896055
Strand +
CircType exon
Host Gene ENSG00000141503.14;
Algorism CIRI2;
Sequence CTCCACGGAGCTCTTGAGGGCGATGACCAGGAACTTAATCCGCTCGTATTTCACTGGGGGCGGGAGAGAAGAGGGATGCTGAGACTTCCCTTCTTGCGCCACGGGCGCCTCCCCGTGGTCTGTCACTACACTGCCCCACCCAGGCCCCAAGTCCCTGGCTCCCAGATCCATTTCTCTCTTCATGAACAAGTATGCGCTGGCCACTCTGTTGGGACATCCTCACCAACACGGTAGTGCCCGCAGCCCTCCATGTCCCCCACGGTGGTCCAGCCCTGCTTCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:4895775|4896055 hsa-miR-34a-5p 0 0 1
chr17:4895775|4896055 hsa-miR-34a-3p 0 0 1
chr17:4895775|4896055 hsa-miR-335-5p 0 0 1
chr17:4895775|4896055 hsa-miR-335-3p 0 0 1
chr17:4895775|4896055 hsa-miR-449a 0 1 1
chr17:4895775|4896055 hsa-miR-433-5p 0 0 1
chr17:4895775|4896055 hsa-miR-433-3p 0 0 1
chr17:4895775|4896055 hsa-miR-539-5p 0 0 1
chr17:4895775|4896055 hsa-miR-539-3p 0 0 1
chr17:4895775|4896055 hsa-miR-604 0 0 1
chr17:4895775|4896055 hsa-miR-625-5p 0 0 1
chr17:4895775|4896055 hsa-miR-625-3p 0 0 1
chr17:4895775|4896055 hsa-miR-661 0 0 1
chr17:4895775|4896055 hsa-miR-449b-5p 0 0 1
chr17:4895775|4896055 hsa-miR-449b-3p 0 0 1
chr17:4895775|4896055 hsa-miR-920 0 0 1
chr17:4895775|4896055 hsa-miR-942-5p 0 0 1
chr17:4895775|4896055 hsa-miR-942-3p 0 0 1
chr17:4895775|4896055 hsa-miR-1206 0 0 1
chr17:4895775|4896055 hsa-miR-1293 0 0 1
chr17:4895775|4896055 hsa-miR-1249-5p 0 0 1
chr17:4895775|4896055 hsa-miR-1249-3p 0 0 1
chr17:4895775|4896055 hsa-miR-1265 0 0 1
chr17:4895775|4896055 hsa-miR-1275 0 0 1
chr17:4895775|4896055 hsa-miR-486-3p 1 1 1
chr17:4895775|4896055 hsa-miR-324-5p 0 0 1
chr17:4895775|4896055 hsa-miR-361-3p 0 1 1
chr17:4895775|4896055 hsa-miR-34c-5p 1 1 1
chr17:4895775|4896055 hsa-miR-542-3p 0 0 1
chr17:4895775|4896055 hsa-miR-142-3p 0 0 1
chr17:4895775|4896055 hsa-miR-642 0 0 1
chr17:4895775|4896055 hsa-miR-1185 0 0 1
chr17:4895775|4896055 hsa-miR-608 0 1 0
chr17:4895775|4896055 hsa-miR-637 1 0 0
chr17:4895775|4896055 hsa-miR-663a 1 0 0
chr17:4895775|4896055 hsa-miR-658 1 0 0
chr17:4895775|4896055 hsa-miR-762 1 1 0
chr17:4895775|4896055 hsa-miR-760 1 0 0
chr17:4895775|4896055 hsa-miR-1182 1 0 0
chr17:4895775|4896055 hsa-miR-1268a 1 0 0
chr17:4895775|4896055 hsa-miR-1276 0 1 0
chr17:4895775|4896055 hsa-miR-2861 1 1 0
chr17:4895775|4896055 hsa-miR-3147 1 0 0
chr17:4895775|4896055 hsa-miR-3154 1 1 0
chr17:4895775|4896055 hsa-miR-3193 1 0 0
chr17:4895775|4896055 hsa-miR-3196 1 0 0
chr17:4895775|4896055 hsa-miR-3197 0 1 0
chr17:4895775|4896055 hsa-miR-4298 1 0 0
chr17:4895775|4896055 hsa-miR-4314 0 1 0
chr17:4895775|4896055 hsa-miR-4322 1 0 0
chr17:4895775|4896055 hsa-miR-4260 0 1 0
chr17:4895775|4896055 hsa-miR-4270 1 0 0
chr17:4895775|4896055 hsa-miR-1268b 1 0 0
chr17:4895775|4896055 hsa-miR-4462 1 0 0
chr17:4895775|4896055 hsa-miR-4466 1 0 0
chr17:4895775|4896055 hsa-miR-4488 1 0 0
chr17:4895775|4896055 hsa-miR-4492 1 0 0
chr17:4895775|4896055 hsa-miR-4498 1 0 0
chr17:4895775|4896055 hsa-miR-4508 1 0 0
chr17:4895775|4896055 hsa-miR-4656 1 0 0
chr17:4895775|4896055 hsa-miR-4675 1 0 0
chr17:4895775|4896055 hsa-miR-4682 1 0 0
chr17:4895775|4896055 hsa-miR-4688 1 0 0
chr17:4895775|4896055 hsa-miR-4689 1 0 0
chr17:4895775|4896055 hsa-miR-4721 1 1 0
chr17:4895775|4896055 hsa-miR-4734 1 1 0
chr17:4895775|4896055 hsa-miR-4741 1 0 0
chr17:4895775|4896055 hsa-miR-4767 1 0 0
chr17:4895775|4896055 hsa-miR-5090 1 0 0
chr17:4895775|4896055 hsa-miR-5698 1 0 0
chr17:4895775|4896055 hsa-miR-5739 1 0 0
chr17:4895775|4896055 hsa-miR-5787 1 0 0
chr17:4895775|4896055 hsa-miR-6081 1 0 0
chr17:4895775|4896055 hsa-miR-6085 1 0 0
chr17:4895775|4896055 hsa-miR-6090 1 0 0
chr17:4895775|4896055 hsa-miR-378j 1 0 0
chr17:4895775|4896055 hsa-miR-6132 1 1 0
chr17:4895775|4896055 hsa-miR-7515 0 1 0
chr17:4895775|4896055 hsa-miR-7974 1 0 0
chr17:4895775|4896055 hsa-miR-8060 1 0 0
chr17:4895775|4896055 hsa-miR-8085 1 0 0
chr17:4895775|4896055 hsa-miR-8089 1 0 0
chr17:4895775|4896055 hsa-miR-1843 0 1 0
chr17:4895775|4896055 hsa-miR-12115 1 0 0
chr17:4895775|4896055 hsa-miR-134-3p 1 0 0
chr17:4895775|4896055 hsa-miR-4435 0 1 0
chr17:4895775|4896055 hsa-miR-4731-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6747-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6765-5p 1 0 0
chr17:4895775|4896055 hsa-miR-125b-1-3p 1 1 0
chr17:4895775|4896055 hsa-miR-6825-5p 1 1 0
chr17:4895775|4896055 hsa-miR-6857-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6799-5p 1 0 0
chr17:4895775|4896055 hsa-miR-1227-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6515-5p 0 1 0
chr17:4895775|4896055 hsa-miR-6089 1 0 0
chr17:4895775|4896055 hsa-miR-7847-3p 1 0 0
chr17:4895775|4896055 hsa-miR-6746-5p 1 0 0
chr17:4895775|4896055 hsa-miR-4709-3p 1 1 0
chr17:4895775|4896055 hsa-miR-3677-5p 0 1 0
chr17:4895775|4896055 hsa-miR-505-5p 0 1 0
chr17:4895775|4896055 hsa-miR-6890-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6741-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6759-5p 1 0 0
chr17:4895775|4896055 hsa-miR-4655-5p 1 0 0
chr17:4895775|4896055 hsa-miR-197-5p 1 0 0
chr17:4895775|4896055 hsa-miR-8069 1 0 0
chr17:4895775|4896055 hsa-miR-6776-5p 0 1 0
chr17:4895775|4896055 hsa-miR-6873-3p 0 1 0
chr17:4895775|4896055 hsa-miR-7845-5p 1 1 0
chr17:4895775|4896055 hsa-miR-3151-5p 1 1 0
chr17:4895775|4896055 hsa-miR-3180-3p 1 0 0
chr17:4895775|4896055 hsa-miR-877-3p 0 1 0
chr17:4895775|4896055 hsa-miR-6829-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6827-5p 1 1 0
chr17:4895775|4896055 hsa-miR-7855-5p 0 1 0
chr17:4895775|4896055 hsa-miR-5006-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6786-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6835-5p 1 0 0
chr17:4895775|4896055 hsa-miR-5088-5p 1 0 0
chr17:4895775|4896055 hsa-miR-7109-5p 1 0 0
chr17:4895775|4896055 hsa-miR-1226-5p 1 0 0
chr17:4895775|4896055 hsa-miR-4786-3p 1 0 0
chr17:4895775|4896055 hsa-miR-1229-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6784-5p 1 0 0
chr17:4895775|4896055 hsa-miR-4640-5p 1 0 0
chr17:4895775|4896055 hsa-miR-1228-5p 1 0 0
chr17:4895775|4896055 hsa-miR-4717-3p 0 1 0
chr17:4895775|4896055 hsa-miR-6749-5p 1 0 0
chr17:4895775|4896055 hsa-miR-3202 1 0 0
chr17:4895775|4896055 hsa-miR-6809-3p 0 1 0
chr17:4895775|4896055 hsa-miR-3648 1 0 0
chr17:4895775|4896055 hsa-miR-4446-3p 0 1 0
chr17:4895775|4896055 hsa-miR-937-5p 1 0 0
chr17:4895775|4896055 hsa-miR-3162-5p 1 0 0
chr17:4895775|4896055 hsa-miR-7154-5p 1 0 0
chr17:4895775|4896055 hsa-miR-423-5p 1 0 0
chr17:4895775|4896055 hsa-miR-4707-5p 1 0 0
chr17:4895775|4896055 hsa-miR-490-5p 1 0 0
chr17:4895775|4896055 hsa-miR-3184-3p 0 1 0
chr17:4895775|4896055 hsa-miR-6789-3p 0 1 0
chr17:4895775|4896055 hsa-miR-4797-5p 0 1 0
chr17:4895775|4896055 hsa-miR-4738-5p 0 1 0
chr17:4895775|4896055 hsa-miR-1207-5p 1 0 0
chr17:4895775|4896055 hsa-miR-4763-3p 1 0 0
chr17:4895775|4896055 hsa-miR-6769b-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6816-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6870-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6775-5p 1 0 0
chr17:4895775|4896055 hsa-miR-5001-5p 1 1 0
chr17:4895775|4896055 hsa-miR-6726-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6743-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6752-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6756-5p 1 1 0
chr17:4895775|4896055 hsa-miR-6769a-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6803-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6813-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6819-5p 1 0 0
chr17:4895775|4896055 hsa-miR-7107-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6779-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6797-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6808-5p 1 0 0
chr17:4895775|4896055 hsa-miR-3620-5p 1 0 0
chr17:4895775|4896055 hsa-miR-4728-5p 1 0 0
chr17:4895775|4896055 hsa-miR-5189-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6862-5p 1 0 0
chr17:4895775|4896055 hsa-miR-10396b-5p 1 0 0
chr17:4895775|4896055 hsa-miR-1237-5p 1 0 0
chr17:4895775|4896055 hsa-miR-328-5p 1 1 0
chr17:4895775|4896055 hsa-miR-449c-5p 0 1 0
chr17:4895775|4896055 hsa-miR-4632-5p 1 0 0
chr17:4895775|4896055 hsa-miR-4685-5p 1 0 0
chr17:4895775|4896055 hsa-miR-4726-5p 1 0 0
chr17:4895775|4896055 hsa-miR-4745-5p 1 0 0
chr17:4895775|4896055 hsa-miR-4749-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6738-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6777-5p 1 1 0
chr17:4895775|4896055 hsa-miR-6794-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6795-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6846-5p 1 1 0
chr17:4895775|4896055 hsa-miR-6848-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6858-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6887-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6889-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6885-5p 1 0 0
chr17:4895775|4896055 hsa-miR-939-5p 1 0 0
chr17:4895775|4896055 hsa-miR-4758-5p 1 0 0
chr17:4895775|4896055 hsa-miR-365a-5p 1 1 0
chr17:4895775|4896055 hsa-miR-365b-5p 1 0 0
chr17:4895775|4896055 hsa-miR-4665-5p 1 1 0
chr17:4895775|4896055 hsa-miR-3679-5p 1 0 0
chr17:4895775|4896055 hsa-miR-4472 0 1 0
chr17:4895775|4896055 hsa-miR-6766-5p 1 1 0
chr17:4895775|4896055 hsa-miR-6785-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6849-5p 1 0 0
chr17:4895775|4896055 hsa-miR-6762-5p 1 0 0
chr17:4895775|4896055 hsa-miR-4756-5p 0 1 0
chr17:4895775|4896055 hsa-miR-4768-5p 0 1 0
chr17:4895775|4896055 hsa-miR-6833-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:4895775|4896055
ORF Type ORF1
Protein Length 52
Nucleotide Length 159
Protein Sequence MLRLPFLRHGRLPVVCHYTAPPRPQVPGSQIHFSLHEQVCAGHSVGTSSPTR
Nucleotide Sequence ATGCTGAGACTTCCCTTCTTGCGCCACGGGCGCCTCCCCGTGGTCTGTCACTACACTGCCCCACCCAGGCCCCAAGTCCCTGGCTCCCAGATCCATTTCTCTCTTCATGAACAAGTATGCGCTGGCCACTCTGTTGGGACATCCTCACCAACACGGTAG
CircID chr17:4895775|4896055
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MPHPGPKSLAPRSISLFMNKYALATLLGHPHQHGSARSPPCPPRWSSPAS
Nucleotide Sequence CTGCCCCACCCAGGCCCCAAGTCCCTGGCTCCCAGATCCATTTCTCTCTTCATGAACAAGTATGCGCTGGCCACTCTGTTGGGACATCCTCACCAACACGGTAGTGCCCGCAGCCCTCCATGTCCCCCACGGTGGTCCAGCCCTGCTTCT
CircID chr17:4895775|4896055
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence MGAGEKRDAETSLLAPRAPPRGLSLHCPTQAPSPWLPDPFLSS
Nucleotide Sequence CTGGGGGCGGGAGAGAAGAGGGATGCTGAGACTTCCCTTCTTGCGCCACGGGCGCCTCCCCGTGGTCTGTCACTACACTGCCCCACCCAGGCCCCAAGTCCCTGGCTCCCAGATCCATTTCTCTCTTCATGA
CircID chr17:4895775|4896055
ORF Type ORF4
Protein Length 30
Nucleotide Length 90
Protein Sequence MRWPLCWDILTNTVVPAALHVPHGGPALLL
Nucleotide Sequence ATGCGCTGGCCACTCTGTTGGGACATCCTCACCAACACGGTAGTGCCCGCAGCCCTCCATGTCCCCCACGGTGGTCCAGCCCTGCTTCTT
CircID chr17:4895775|4896055
ORF Type ORF5
Protein Length 63
Nucleotide Length 192
Protein Sequence MVRMSQQSGQRILVHEERNGSGSQGLGAWVGQCSDRPRGGARGARREVSASLFSPAPSEIRAD
Nucleotide Sequence TTGGTGAGGATGTCCCAACAGAGTGGCCAGCGCATACTTGTTCATGAAGAGAGAAATGGATCTGGGAGCCAGGGACTTGGGGCCTGGGTGGGGCAGTGTAGTGACAGACCACGGGGAGGCGCCCGTGGCGCAAGAAGGGAAGTCTCAGCATCCCTCTTCTCTCCCGCCCCCAGTGAAATACGAGCGGATTAA
CircID chr17:4895775|4896055
ORF Type ORF6
Protein Length 63
Nucleotide Length 189
Protein Sequence MFMKREMDLGARDLGPGWGSVVTDHGEAPVAQEGKSQHPSSLPPPVKYERIKFLVIALKSSVE
Nucleotide Sequence TTGTTCATGAAGAGAGAAATGGATCTGGGAGCCAGGGACTTGGGGCCTGGGTGGGGCAGTGTAGTGACAGACCACGGGGAGGCGCCCGTGGCGCAAGAAGGGAAGTCTCAGCATCCCTCTTCTCTCCCGCCCCCAGTGAAATACGAGCGGATTAAGTTCCTGGTCATCGCCCTCAAGAGCTCCGTGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab