CircRNA Information

General Information
circRNA Basic Information
CircID chr17:4944558|4944843
Strand +
CircType exon
Host Gene ENSG00000108523.14;
Algorism CIRI2;
Sequence CCTCCTCTTGCCCTTGAGTTTCTTCCTCTTGGTCTTCGTCCCCAGGACCCCGATGAACAGGCTGCTTGCAAATGGGGCAGGTCTTCCGGGTCTGAGTGAGCCAGGGGTCCACGCAGCGGCTGTGGTAGGCTGCAGAGAGGAACAAGGTGAAGCACCTGGTGGCTGCTGGTGGCAGAGGGGCATGGGCAGGCAGTGAGGGCCTCACCATGAGCACAGGGGAGTACCCGCAGCTTGTCCCCATCCTCATATTCATCCAGGCAAATGGCACAGACATCATACTGGTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:4944558|4944843 hsa-miR-31-5p 0 0 1
chr17:4944558|4944843 hsa-miR-31-3p 0 0 1
chr17:4944558|4944843 hsa-miR-149-5p 0 0 1
chr17:4944558|4944843 hsa-miR-149-3p 0 0 1
chr17:4944558|4944843 hsa-miR-412-5p 0 0 1
chr17:4944558|4944843 hsa-miR-412-3p 0 0 1
chr17:4944558|4944843 hsa-miR-634 -4 0 1
chr17:4944558|4944843 hsa-miR-661 -10 0 1
chr17:4944558|4944843 hsa-miR-1226-5p 0 0 1
chr17:4944558|4944843 hsa-miR-1226-3p 0 0 1
chr17:4944558|4944843 hsa-miR-1227-5p 0 0 1
chr17:4944558|4944843 hsa-miR-1227-3p 0 0 1
chr17:4944558|4944843 hsa-miR-1205 -6 0 1
chr17:4944558|4944843 hsa-miR-1206 0 0 1
chr17:4944558|4944843 hsa-miR-1255a 2 0 1
chr17:4944558|4944843 hsa-miR-1272 -6 0 1
chr17:4944558|4944843 hsa-miR-1322 -7 0 1
chr17:4944558|4944843 hsa-miR-615-5p -13 1 1
chr17:4944558|4944843 hsa-miR-1184 -11 0 1
chr17:4944558|4944843 hsa-miR-331-3p -7 0 1
chr17:4944558|4944843 hsa-miR-654-3p -10 1 1
chr17:4944558|4944843 hsa-miR-140-3p 0 0 1
chr17:4944558|4944843 hsa-miR-324-3p -10 0 1
chr17:4944558|4944843 hsa-miR-450b-5p -3 0 1
chr17:4944558|4944843 hsa-miR-1255b 0 0 1
chr17:4944558|4944843 hsa-miR-7 0 0 1
chr17:4944558|4944843 hsa-miR-1254 0 0 1
chr17:4944558|4944843 hsa-miR-24 0 0 1
chr17:4944558|4944843 hsa-miR-886-3p 0 0 1
chr17:4944558|4944843 hsa-miR-1185 0 0 1
chr17:4944558|4944843 hsa-miR-596 -15 1 0
chr17:4944558|4944843 hsa-miR-764 -22 1 0
chr17:4944558|4944843 hsa-miR-1262 -4 1 0
chr17:4944558|4944843 hsa-miR-1913 -16 1 0
chr17:4944558|4944843 hsa-miR-3183 -13 1 0
chr17:4944558|4944843 hsa-miR-4312 -13 1 0
chr17:4944558|4944843 hsa-miR-4284 -10 1 0
chr17:4944558|4944843 hsa-miR-3916 -10 1 0
chr17:4944558|4944843 hsa-miR-4476 -12 1 0
chr17:4944558|4944843 hsa-miR-4496 -12 1 0
chr17:4944558|4944843 hsa-miR-2392 -10 1 0
chr17:4944558|4944843 hsa-miR-4641 -14 1 0
chr17:4944558|4944843 hsa-miR-8089 -21 1 0
chr17:4944558|4944843 hsa-miR-9986 -13 1 0
chr17:4944558|4944843 hsa-miR-7-5p -7 1 0
chr17:4944558|4944843 hsa-miR-6857-5p -11 1 0
chr17:4944558|4944843 hsa-miR-4786-5p -9 1 0
chr17:4944558|4944843 hsa-miR-4753-5p -13 1 0
chr17:4944558|4944843 hsa-miR-3189-5p -19 1 0
chr17:4944558|4944843 hsa-miR-3605-5p -3 1 0
chr17:4944558|4944843 hsa-miR-6810-5p -15 1 0
chr17:4944558|4944843 hsa-miR-7855-5p -8 1 0
chr17:4944558|4944843 hsa-miR-5008-5p -9 1 0
chr17:4944558|4944843 hsa-miR-6852-5p -14 1 0
chr17:4944558|4944843 hsa-miR-4763-5p -21 1 0
chr17:4944558|4944843 hsa-miR-6894-3p -9 1 0
chr17:4944558|4944843 hsa-miR-4715-3p -9 1 0
chr17:4944558|4944843 hsa-miR-7113-3p -16 1 0
chr17:4944558|4944843 hsa-miR-7111-3p -9 1 0
chr17:4944558|4944843 hsa-miR-4733-3p -8 1 0
chr17:4944558|4944843 hsa-miR-7156-3p -14 1 0
chr17:4944558|4944843 hsa-miR-3191-3p -17 1 0
chr17:4944558|4944843 hsa-miR-3120-5p -15 1 0
chr17:4944558|4944843 hsa-miR-2276-5p -13 1 0
chr17:4944558|4944843 hsa-miR-6872-3p -14 1 0
chr17:4944558|4944843 hsa-miR-6837-3p -16 1 0
chr17:4944558|4944843 hsa-miR-4749-3p -14 1 0
chr17:4944558|4944843 hsa-miR-328-3p -13 1 0
chr17:4944558|4944843 hsa-miR-6847-3p -7 1 0
chr17:4944558|4944843 hsa-miR-6890-3p -9 1 0
chr17:4944558|4944843 hsa-miR-6754-3p -20 1 0
chr17:4944558|4944843 hsa-miR-5008-3p -11 1 0
chr17:4944558|4944843 hsa-miR-3116 -6 1 0
chr17:4944558|4944843 hsa-miR-4700-5p -17 1 0
chr17:4944558|4944843 hsa-miR-4667-5p -13 1 0
chr17:4944558|4944843 hsa-miR-3059-5p -17 1 0
chr17:4944558|4944843 hsa-miR-4723-3p -11 1 0
chr17:4944558|4944843 hsa-miR-6769b-3p -13 1 0
chr17:4944558|4944843 hsa-miR-6859-5p -10 1 0
chr17:4944558|4944843 hsa-miR-7157-3p -19 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:4944558|4944843
ORF Type ORF1
Protein Length 62
Nucleotide Length 189
Protein Sequence MPLSFFLLVFVPRTPMNRLLANGAGLPGLSEPGVHAAAVVGCREEQGEAPGGCWWQRGMGRQ
Nucleotide Sequence TTGCCCTTGAGTTTCTTCCTCTTGGTCTTCGTCCCCAGGACCCCGATGAACAGGCTGCTTGCAAATGGGGCAGGTCTTCCGGGTCTGAGTGAGCCAGGGGTCCACGCAGCGGCTGTGGTAGGCTGCAGAGAGGAACAAGGTGAAGCACCTGGTGGCTGCTGGTGGCAGAGGGGCATGGGCAGGCAGTGA
CircID chr17:4944558|4944843
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MVAAGGRGAWAGSEGLTMSTGEYPQLVPILIFIQANGTDIILV
Nucleotide Sequence CTGGTGGCTGCTGGTGGCAGAGGGGCATGGGCAGGCAGTGAGGGCCTCACCATGAGCACAGGGGAGTACCCGCAGCTTGTCCCCATCCTCATATTCATCCAGGCAAATGGCACAGACATCATACTGGTC
CircID chr17:4944558|4944843
ORF Type ORF3
Protein Length 92
Nucleotide Length 276
Protein Sequence MMSVPFAWMNMRMGTSCGYSPVLMVRPSLPAHAPLPPAATRCFTLFLSAAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEDQEEETQGQEE
Nucleotide Sequence ATGATGTCTGTGCCATTTGCCTGGATGAATATGAGGATGGGGACAAGCTGCGGGTACTCCCCTGTGCTCATGGTGAGGCCCTCACTGCCTGCCCATGCCCCTCTGCCACCAGCAGCCACCAGGTGCTTCACCTTGTTCCTCTCTGCAGCCTACCACAGCCGCTGCGTGGACCCCTGGCTCACTCAGACCCGGAAGACCTGCCCCATTTGCAAGCAGCCTGTTCATCGGGGTCCTGGGGACGAAGACCAAGAGGAAGAAACTCAAGGGCAAGAGGAG
CircID chr17:4944558|4944843
ORF Type ORF4
Protein Length 63
Nucleotide Length 189
Protein Sequence MPMPLCHQQPPGASPCSSLQPTTAAAWTPGSLRPGRPAPFASSLFIGVLGTKTKRKKLKGKRR
Nucleotide Sequence CTGCCCATGCCCCTCTGCCACCAGCAGCCACCAGGTGCTTCACCTTGTTCCTCTCTGCAGCCTACCACAGCCGCTGCGTGGACCCCTGGCTCACTCAGACCCGGAAGACCTGCCCCATTTGCAAGCAGCCTGTTCATCGGGGTCCTGGGGACGAAGACCAAGAGGAAGAAACTCAAGGGCAAGAGGAGG
CircID chr17:4944558|4944843
ORF Type ORF5
Protein Length 85
Nucleotide Length 255
Protein Sequence MDEYEDGDKLRVLPCAHGEALTACPCPSATSSHQVLHLVPLCSLPQPLRGPLAHSDPEDLPHLQAACSSGSWGRRPRGRNSRARG
Nucleotide Sequence CTGGATGAATATGAGGATGGGGACAAGCTGCGGGTACTCCCCTGTGCTCATGGTGAGGCCCTCACTGCCTGCCCATGCCCCTCTGCCACCAGCAGCCACCAGGTGCTTCACCTTGTTCCTCTCTGCAGCCTACCACAGCCGCTGCGTGGACCCCTGGCTCACTCAGACCCGGAAGACCTGCCCCATTTGCAAGCAGCCTGTTCATCGGGGTCCTGGGGACGAAGACCAAGAGGAAGAAACTCAAGGGCAAGAGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab