CircRNA Information

General Information
circRNA Basic Information
CircID chr17:4946673|4946789
Strand -
CircType exon
Host Gene ENSG00000108518.7;
Algorism CIRI2;
Sequence CGGTGCTCTTGGTACGAAGATCCATGCTAAATTCCCCATCCTGCAGCAGTGAGTCCCGGATCACCGAACATTTCTGGCCCCCAAGTGTCAGCCCATTCACGTAAAAACTTGACCGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:4946673|4946789 hsa-miR-126-5p 0 0 1
chr17:4946673|4946789 hsa-miR-126-3p 0 0 1
chr17:4946673|4946789 hsa-miR-335-5p 0 0 1
chr17:4946673|4946789 hsa-miR-335-3p 0 0 1
chr17:4946673|4946789 hsa-miR-1205 0 0 1
chr17:4946673|4946789 hsa-miR-1286 0 0 1
chr17:4946673|4946789 hsa-miR-1257 0 0 1
chr17:4946673|4946789 hsa-miR-1275 0 0 1
chr17:4946673|4946789 hsa-miR-490-5p 0 1 1
chr17:4946673|4946789 hsa-miR-637 1 0 0
chr17:4946673|4946789 hsa-miR-762 1 0 0
chr17:4946673|4946789 hsa-miR-1183 1 0 0
chr17:4946673|4946789 hsa-miR-1538 1 0 0
chr17:4946673|4946789 hsa-miR-4322 1 0 0
chr17:4946673|4946789 hsa-miR-4488 1 0 0
chr17:4946673|4946789 hsa-miR-4489 1 0 0
chr17:4946673|4946789 hsa-miR-4498 1 0 0
chr17:4946673|4946789 hsa-miR-2392 1 1 0
chr17:4946673|4946789 hsa-miR-4507 1 0 0
chr17:4946673|4946789 hsa-miR-4525 1 0 0
chr17:4946673|4946789 hsa-miR-1587 1 1 0
chr17:4946673|4946789 hsa-miR-4656 1 1 0
chr17:4946673|4946789 hsa-miR-4734 1 0 0
chr17:4946673|4946789 hsa-miR-4741 1 0 0
chr17:4946673|4946789 hsa-miR-5705 1 0 0
chr17:4946673|4946789 hsa-miR-6071 1 0 0
chr17:4946673|4946789 hsa-miR-12126 1 1 0
chr17:4946673|4946789 hsa-miR-323a-5p 0 1 0
chr17:4946673|4946789 hsa-miR-6894-5p 1 0 0
chr17:4946673|4946789 hsa-miR-3692-5p 1 0 0
chr17:4946673|4946789 hsa-miR-5187-5p 1 0 0
chr17:4946673|4946789 hsa-miR-1227-5p 1 0 0
chr17:4946673|4946789 hsa-miR-6089 1 0 0
chr17:4946673|4946789 hsa-miR-6757-5p 1 0 0
chr17:4946673|4946789 hsa-miR-4722-5p 1 0 0
chr17:4946673|4946789 hsa-miR-6829-5p 1 0 0
chr17:4946673|4946789 hsa-miR-3190-3p 1 0 0
chr17:4946673|4946789 hsa-miR-6810-5p 1 0 0
chr17:4946673|4946789 hsa-miR-6786-5p 1 0 0
chr17:4946673|4946789 hsa-miR-5088-5p 1 0 0
chr17:4946673|4946789 hsa-miR-6784-5p 1 0 0
chr17:4946673|4946789 hsa-miR-4640-5p 1 1 0
chr17:4946673|4946789 hsa-miR-3648 1 0 0
chr17:4946673|4946789 hsa-miR-6781-5p 1 0 0
chr17:4946673|4946789 hsa-miR-5010-5p 1 0 0
chr17:4946673|4946789 hsa-miR-598-5p 0 1 0
chr17:4946673|4946789 hsa-miR-3680-5p 0 1 0
chr17:4946673|4946789 hsa-miR-6812-5p 1 0 0
chr17:4946673|4946789 hsa-miR-5001-5p 1 0 0
chr17:4946673|4946789 hsa-miR-6756-5p 1 0 0
chr17:4946673|4946789 hsa-miR-6803-5p 1 0 0
chr17:4946673|4946789 hsa-miR-6751-5p 1 0 0
chr17:4946673|4946789 hsa-miR-6763-5p 1 0 0
chr17:4946673|4946789 hsa-miR-6774-5p 1 0 0
chr17:4946673|4946789 hsa-miR-3620-5p 1 1 0
chr17:4946673|4946789 hsa-miR-5196-5p 1 0 0
chr17:4946673|4946789 hsa-miR-6780b-5p 1 0 0
chr17:4946673|4946789 hsa-miR-1237-5p 1 0 0
chr17:4946673|4946789 hsa-miR-328-5p 1 0 0
chr17:4946673|4946789 hsa-miR-4726-5p 0 1 0
chr17:4946673|4946789 hsa-miR-4745-5p 1 0 0
chr17:4946673|4946789 hsa-miR-6777-5p 1 0 0
chr17:4946673|4946789 hsa-miR-6846-5p 1 0 0
chr17:4946673|4946789 hsa-miR-6848-5p 1 0 0
chr17:4946673|4946789 hsa-miR-4697-5p 1 0 0
chr17:4946673|4946789 hsa-miR-6845-5p 0 1 0
chr17:4946673|4946789 hsa-miR-939-5p 1 0 0
chr17:4946673|4946789 hsa-miR-4758-5p 1 0 0
chr17:4946673|4946789 hsa-miR-4665-5p 1 0 0
chr17:4946673|4946789 hsa-miR-4716-3p 1 0 0
chr17:4946673|4946789 hsa-miR-6766-5p 1 0 0
chr17:4946673|4946789 hsa-miR-10394-5p 0 1 0
chr17:4946673|4946789 hsa-miR-9902 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:4946673|4946789
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MVRRSMLNSPSCSSESRITEHFWPPSVSPFT
Nucleotide Sequence TTGGTACGAAGATCCATGCTAAATTCCCCATCCTGCAGCAGTGAGTCCCGGATCACCGAACATTTCTGGCCCCCAAGTGTCAGCCCATTCACGTAA
CircID chr17:4946673|4946789
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MTLGGQKCSVIRDSLLQDGEFSMDLRTKST
Nucleotide Sequence CTGACACTTGGGGGCCAGAAATGTTCGGTGATCCGGGACTCACTGCTGCAGGATGGGGAATTTAGCATGGATCTTCGTACCAAGAGCACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab